# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1svpA 161 9.19e-01 1svpA b.47.1.3 26384 1wspA 84 9.67e-01 1d2oA 187 1.23e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1cf7B 95 1.56e+00 1cf7B a.4.5.17 16152 2etxA 209 1.83e+00 1hrkA 359 2.26e+00 1hrkA c.92.1.1 61228 1ma3A 253 4.07e+00 c.31.1.5 78883 1z6oA 212 4.24e+00 1repC 251 5.02e+00 1repC a.4.5.10,a.4.5.10 16125,16126 1xwvA 129 5.83e+00 1y96B 85 5.96e+00 1pu1A 94 8.22e+00 d.266.1.1 104307 1uheA 97 1.00e+01 1w2yA 229 1.18e+01 a.204.1.1 109140 1o7dE 126 1.20e+01 1ppjE 196 1.26e+01 b.33.1.1,f.23.12.1 104260,104261 1z57A 339 1.40e+01 1x4tA 92 1.47e+01 1vkuA 100 1.56e+01 a.28.1.1 108690 1gyxA 76 1.60e+01 d.80.1.1 76387 1yukA 103 1.96e+01 1zvdA 380 2.05e+01 2b7eA 59 2.06e+01 1q9uA 130 2.07e+01 d.129.7.1 96314 2c7hA 86 2.13e+01 1f3uA 118 2.18e+01 1f3uA b.65.1.1 27521 1bby 69 2.25e+01 2bby a.4.5.15 16149 1qopB 396 2.52e+01 2tysB c.79.1.1 35270 1wy6A 172 2.58e+01 1nu4A 97 2.61e+01 d.58.7.1 80731 1knzA 164 2.89e+01 e.34.1.1 68709 2ez6A 221 3.07e+01 2flsA 132 3.08e+01 2rslA 140 3.13e+01 2rslA c.53.1.1 33345 1k0hA 117 3.27e+01 b.106.1.2 71975 1p5vA 235 3.44e+01 b.1.11.1,b.7.2.1 87812,87813 1vp2A 208 3.64e+01 1s6lA 212 3.64e+01 1vfrA 218 3.69e+01 1vfrA d.90.1.1 40247 1f06A 320 3.80e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1dj7B 75 3.90e+01 1dj7B b.34.4.3 24598 1utiA 58 3.93e+01 b.34.2.1 99962 2gw6A 123 3.95e+01 1jk4A 89 3.99e+01 b.9.1.1 77130 2d3jA 157 4.07e+01 2bh4X 134 4.13e+01 1ukkA 142 4.19e+01 d.227.1.1 99491 2bpa1 426 4.41e+01 2bpa1 1zdzA 302 4.55e+01 1n13B 113 4.57e+01 1in0A 163 4.60e+01 d.58.49.1,d.58.49.1 83694,83695 1ucrA 78 4.64e+01 a.4.5.45 99188 2bwbA 46 4.65e+01 2a6vA 226 4.80e+01 1rr7A 129 4.84e+01 a.4.1.14 105075 2g3aA 152 4.92e+01 1fhgA 154 4.95e+01 1tlk b.1.1.4 21706 1xn5A 146 5.03e+01 2fdrA 229 5.19e+01 1yg6A 193 5.47e+01 1eg2A 319 5.95e+01 1eg2A c.66.1.11 34249 1vq3A 94 6.08e+01 1y32A 24 6.20e+01 1cdq 77 6.27e+01 1cds g.7.1.3 44459 1z94A 147 6.32e+01 1keaA 221 6.35e+01 a.96.1.2 68491 1kyqA 274 6.39e+01 c.2.1.11,e.37.1.1 73281,73282 1wwhA 119 6.46e+01 2d00A 109 6.49e+01 2etdA 171 6.61e+01 1zc3B 113 6.68e+01 1sheA 103 6.75e+01 d.274.1.1 105551 1zx5A 300 6.83e+01 1d4tA 104 6.84e+01 1d4tA d.93.1.1 40537 1z06A 189 6.90e+01 1i8fA 81 6.94e+01 1i8fA b.38.1.1 61959 1r64A 481 7.05e+01 b.18.1.20,c.41.1.1 97140,97141 1hqz1 141 7.06e+01 1wmhA 89 7.09e+01 1s0yB 71 7.22e+01 d.80.1.1 98315 1ze3C 205 7.45e+01 2cu3A 64 7.49e+01 1ft5A 211 7.56e+01 1bvb a.138.1.3 19681 1uvqB 198 7.74e+01 b.1.1.2,d.19.1.1 100064,100065 1m07A 111 7.77e+01 d.5.1.1 78328 1qj4A 257 7.91e+01 1qj4A c.69.1.20 34796 1g79A 218 8.01e+01 1ci0A b.45.1.1 25752 1rqtA 37 8.03e+01 a.108.1.1 97771 2gmqA 118 8.19e+01 1dro 122 8.34e+01 1btn b.55.1.1 26954 1xsqA 168 8.63e+01 1v54K 56 8.67e+01 f.23.5.1 100332 1dbhA 354 8.70e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1njhA 119 8.72e+01 b.128.1.1 85787 1yb3A 175 8.76e+01 1dyqA 234 8.76e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1wfeA 86 8.80e+01 2dfkA 402 8.84e+01 1dpqA 20 8.84e+01 j.60.1.1 46345 1bb8 71 8.86e+01 2bb8 d.10.1.1 37478 1zfuA 40 8.91e+01