# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 2.12e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1xn5A 146 1.90e+00 1c7nA 399 2.36e+00 1d2fA c.67.1.3 34413 1d2oA 187 3.03e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1hyuA 521 3.21e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1iz5A 249 3.22e+00 d.131.1.2,d.131.1.2 83834,83835 1zynA 202 3.38e+00 1ydmA 187 3.68e+00 2rslA 140 4.00e+00 2rslA c.53.1.1 33345 1wspA 84 4.15e+00 1qhlA 227 4.48e+00 1qhlA c.37.1.12 32382 1mixA 206 4.77e+00 a.11.2.1,b.55.1.5 79166,79167 1e9rA 437 5.77e+00 c.37.1.11 64827 1m93A 55 6.40e+00 e.1.1.1 91235 1yiyA 429 6.62e+00 1hqz1 141 7.04e+00 1yizA 429 7.60e+00 1j5vA 351 8.35e+00 c.72.1.1 71585 2afbA 351 9.60e+00 2fclA 169 9.70e+00 2ewrA 170 9.71e+00 2cxcA 144 1.05e+01 1sqsA 242 1.16e+01 c.23.5.5 98968 3seb 238 1.23e+01 3seb b.40.2.2,d.15.6.1 25184,37773 2gw6A 123 1.37e+01 1oa2A 218 1.41e+01 b.29.1.11 86721 1qavA 90 1.41e+01 1qauA b.36.1.1 24777 1tlk 154 1.45e+01 1tlk b.1.1.4 21707 1tluA 130 1.45e+01 d.156.1.2 107139 1fhgA 154 1.47e+01 1tlk b.1.1.4 21706 1xf1A 926 1.66e+01 1rwzA 245 1.72e+01 d.131.1.2,d.131.1.2 98005,98006 1h8vA 218 1.74e+01 2nlrA b.29.1.11 60795 1ma3A 253 1.76e+01 c.31.1.5 78883 2b7eA 59 1.87e+01 2bg5A 324 1.93e+01 2pil 159 2.06e+01 2pil d.24.1.1 38376 1vr7A 142 2.09e+01 1xewY 172 2.15e+01 1ur1A 378 2.31e+01 c.1.8.3 99804 1ri5A 298 2.32e+01 c.66.1.34 97502 1pp0A 199 2.39e+01 d.103.1.1 104211 1b25A 619 2.43e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1a0rP 245 2.48e+01 1b9yC c.47.1.6 33054 1wmhB 86 2.53e+01 1rp4A 389 2.69e+01 a.227.1.1 105027 2aefA 234 2.70e+01 1ygs 234 2.77e+01 1ygs b.26.1.1 23907 1pnsC 206 2.84e+01 i.1.1.1 88170 1o58A 303 3.05e+01 c.79.1.1 92491 1zpvA 91 3.08e+01 1hdoA 206 3.20e+01 1he2A c.2.1.2 60965 2f86B 143 3.22e+01 1pbgA 468 3.23e+01 1e70M c.1.8.4 28946 1xwvA 129 3.28e+01 1hetA 374 3.36e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1qi9A 556 3.36e+01 1qhbA a.111.1.2 19053 2amhA 207 3.43e+01 1repC 251 3.49e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ft5A 211 3.53e+01 1bvb a.138.1.3 19681 1sr4B 261 3.55e+01 d.151.1.1 105949 1fwkA 296 3.61e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1n8kA 374 3.80e+01 b.35.1.2,c.2.1.1 80298,80299 1h72C 296 3.81e+01 d.14.1.5,d.58.26.1 60712,60713 2ohxA 374 3.82e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1ockA 412 3.84e+01 c.117.1.1 86802 1u3wA 374 3.94e+01 1pyfA 312 3.99e+01 c.1.7.1 95334 1shsA 147 3.99e+01 1shsA b.15.1.1 23675 1fjgC 239 4.01e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1c7qA 445 4.03e+01 2pgi c.80.1.2 35307 1vckA 115 4.10e+01 1l6xA 207 4.11e+01 b.1.1.2,b.1.1.2 73642,73643 1fc1A 224 4.11e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1epwA 1290 4.19e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1sek 378 4.28e+01 1sek e.1.1.1 42675 2cygA 312 4.53e+01 1ahsA 126 4.73e+01 1ahsA b.19.1.1 23794 1od8A 313 4.73e+01 c.1.8.3 86838 1e0wA 313 4.78e+01 1taxA c.1.8.3 59150 1r75A 141 4.83e+01 b.134.1.1 97189 2fh7A 595 4.88e+01 1bo4A 168 4.89e+01 1bo4A d.108.1.1 40798 1o57A 291 4.97e+01 a.4.5.40,c.61.1.1 92483,92484 1v0lA 313 5.10e+01 c.1.8.3 108207 2adbA 148 5.11e+01 1cby 259 5.21e+01 1cby d.103.1.1 40705 1fr3A 67 5.22e+01 1fr3A b.40.6.1 25436 1njhA 119 5.25e+01 b.128.1.1 85787 2myr 501 5.28e+01 1u2xA 474 5.49e+01 c.72.1.3 107622 1w7lA 422 5.53e+01 c.67.1.1 109226 1aq0A 306 5.67e+01 1aq0A c.1.8.3 28842 1fw9A 164 5.76e+01 1fw9A d.190.1.1 60059 1tt8A 164 5.76e+01 1quqB 121 5.79e+01 1quqB b.40.4.3 25305 1bia 321 5.82e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1iqaA 160 5.83e+01 b.22.1.1 71274 1xyiA 66 5.86e+01 1g0sA 209 5.89e+01 1g0sA d.113.1.1 60187 1p3cA 215 6.00e+01 b.47.1.1 93996 1e0tA 470 6.03e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2dfkA 402 6.04e+01 1b5tA 275 6.08e+01 1b5tA c.1.23.1 29676 1ryjA 70 6.08e+01 d.15.3.2 98104 1s55A 156 6.19e+01 1p8kZ 254 6.23e+01 d.95.2.1,d.95.2.1 94361,94362 2g9iA 249 6.26e+01 1qlmA 316 6.33e+01 1qlmA d.147.1.1 41765 1vbvA 105 6.33e+01 1r77A 103 6.52e+01 1regX 122 6.57e+01 1regX d.58.27.1 39406 2g6tA 306 6.61e+01 1fg7A 356 6.63e+01 1gewA c.67.1.1 59819 1h7zA 194 6.67e+01 1qhvA b.21.1.1 60733 1s72L 165 6.67e+01 c.12.1.1 105331 1vqoL 165 6.68e+01 1jj2K 164 6.72e+01 1ffkJ c.12.1.1 63096 1xfcA 384 6.84e+01 1lqtA 456 6.90e+01 c.3.1.1,c.4.1.1 74198,74199 1tiqA 180 7.02e+01 d.108.1.1 107010 2b33A 140 7.04e+01 1gewA 356 7.11e+01 1gewA c.67.1.1 60470 1vjpA 394 7.17e+01 c.2.1.3,d.81.1.3 100828,100829 1xhfA 123 7.20e+01 1t0aA 159 7.36e+01 1ten 90 7.58e+01 1ten b.1.2.1 21990 1ej0A 180 7.76e+01 1ej0A c.66.1.2 34179 1e4mM 501 7.89e+01 1e70M c.1.8.4 59226 2gmqA 118 7.89e+01 1zp4A 304 7.93e+01 1nwwA 149 8.22e+01 d.17.4.8 86306 2g5dA 422 8.26e+01 1o1zA 234 8.33e+01 c.1.18.3 86555 1vddA 228 8.42e+01 e.49.1.1 108519 1exg 110 8.43e+01 1exg b.2.2.1 22387 1g6gA 127 8.51e+01 1g6gA b.26.1.2 23916 1vphA 149 8.59e+01 1h09A 338 8.66e+01 b.109.1.1,c.1.8.8 83420,83421 1o6dA 163 8.69e+01 c.116.1.3 92567 2ab5A 269 8.76e+01 1ih8A 271 8.89e+01 2nsyA c.26.2.1 62377 1qvcA 145 8.90e+01 3ullA b.40.4.3 25284 1kqpA 271 8.96e+01 c.26.2.1 72883