# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dyqA 234 1.22e-01 3seb b.40.2.2,d.15.6.1 59140,59141 1zynA 202 8.20e-01 1hyuA 521 1.17e+00 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1m93A 55 1.23e+00 e.1.1.1 91235 2rslA 140 1.40e+00 2rslA c.53.1.1 33345 1iz5A 249 1.51e+00 d.131.1.2,d.131.1.2 83834,83835 1qhlA 227 2.69e+00 1qhlA c.37.1.12 32382 1xn5A 146 2.98e+00 1lwjA 441 3.36e+00 b.71.1.1,c.1.8.1 74303,74304 1sqsA 242 3.59e+00 c.23.5.5 98968 1repC 251 3.74e+00 1repC a.4.5.10,a.4.5.10 16125,16126 2afbA 351 5.32e+00 1j5vA 351 5.66e+00 c.72.1.1 71585 1od8A 313 5.92e+00 c.1.8.3 86838 2bg5A 324 5.92e+00 2cxcA 144 6.24e+00 1pnsC 206 6.33e+00 i.1.1.1 88170 2b33A 140 6.45e+00 1e9rA 437 7.01e+00 c.37.1.11 64827 1v0lA 313 7.31e+00 c.1.8.3 108207 1e0wA 313 7.39e+00 1taxA c.1.8.3 59150 1ur1A 378 8.37e+00 c.1.8.3 99804 2ewrA 170 8.53e+00 2fclA 169 8.54e+00 1o58A 303 8.75e+00 c.79.1.1 92491 1xewY 172 9.63e+00 1ygs 234 9.76e+00 1ygs b.26.1.1 23907 1h09A 338 9.80e+00 b.109.1.1,c.1.8.8 83420,83421 1a0rP 245 1.01e+01 1b9yC c.47.1.6 33054 1y96B 85 1.02e+01 2gfgA 193 1.03e+01 2pil 159 1.11e+01 2pil d.24.1.1 38376 1p8kZ 254 1.14e+01 d.95.2.1,d.95.2.1 94361,94362 1wspA 84 1.14e+01 1reqB 637 1.14e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2gw6A 123 1.17e+01 1igs 248 1.18e+01 1a53 c.1.2.4 28565 1ri5A 298 1.23e+01 c.66.1.34 97502 1c52 131 1.23e+01 1c52 a.3.1.1 15810 1a53 247 1.23e+01 1a53 c.1.2.4 28564 1ockA 412 1.25e+01 c.117.1.1 86802 1n8kA 374 1.28e+01 b.35.1.2,c.2.1.1 80298,80299 2ohxA 374 1.31e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1hetA 374 1.31e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1tf1A 198 1.33e+01 d.110.2.2 106826 1rwzA 245 1.33e+01 d.131.1.2,d.131.1.2 98005,98006 1tluA 130 1.55e+01 d.156.1.2 107139 1tiqA 180 1.59e+01 d.108.1.1 107010 1hqz1 141 1.60e+01 1hdoA 206 1.61e+01 1he2A c.2.1.2 60965 1wmhB 86 1.64e+01 1k38A 254 1.65e+01 e.3.1.1 84303 1cby 259 1.72e+01 1cby d.103.1.1 40705 1fhgA 154 1.72e+01 1tlk b.1.1.4 21706 1vr7A 142 1.73e+01 1o6dA 163 1.77e+01 c.116.1.3 92567 1gyxA 76 1.82e+01 d.80.1.1 76387 1qi9A 556 1.82e+01 1qhbA a.111.1.2 19053 1tlk 154 1.86e+01 1tlk b.1.1.4 21707 1o1zA 234 1.87e+01 c.1.18.3 86555 2amhA 207 1.89e+01 2g6tA 306 1.94e+01 2c3zA 222 1.95e+01 1u2xA 474 1.98e+01 c.72.1.3 107622 1evuA 731 1.98e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1h72C 296 2.02e+01 d.14.1.5,d.58.26.1 60712,60713 1ycyA 71 2.04e+01 2aefA 234 2.13e+01 1ih8A 271 2.18e+01 2nsyA c.26.2.1 62377 1qlmA 316 2.20e+01 1qlmA d.147.1.1 41765 1o57A 291 2.21e+01 a.4.5.40,c.61.1.1 92483,92484 1kqpA 271 2.22e+01 c.26.2.1 72883 1qavA 90 2.23e+01 1qauA b.36.1.1 24777 1of8A 370 2.25e+01 c.1.10.4 92819 1yiyA 429 2.25e+01 1ryjA 70 2.28e+01 d.15.3.2 98104 1ex0A 731 2.29e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2b7eA 59 2.36e+01 1fwkA 296 2.49e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 1e0tA 470 2.49e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2adoA 196 2.50e+01 1c7nA 399 2.56e+01 1d2fA c.67.1.3 34413 1woqA 267 2.64e+01 c.55.1.10,c.55.1.10 109462,109463 1c7qA 445 2.66e+01 2pgi c.80.1.2 35307 1pyfA 312 2.69e+01 c.1.7.1 95334 1sek 378 2.71e+01 1sek e.1.1.1 42675 1shsA 147 2.73e+01 1shsA b.15.1.1 23675 1eceA 358 2.81e+01 1eceA c.1.8.3 28813 1u3wA 374 2.83e+01 1dkuA 317 2.83e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1b25A 619 2.85e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2etxA 209 2.90e+01 1nf3C 128 2.95e+01 b.36.1.1 85596 1ma3A 253 2.97e+01 c.31.1.5 78883 1fjgC 239 3.05e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 2g9iA 249 3.07e+01 1t0aA 159 3.13e+01 1zpvA 91 3.22e+01 1xfcA 384 3.24e+01 1vkuA 100 3.28e+01 a.28.1.1 108690 1vddA 228 3.30e+01 e.49.1.1 108519 2ab5A 269 3.34e+01 1tljA 213 3.35e+01 d.282.1.1 107126 2myr 501 3.40e+01 1wkqA 164 3.42e+01 c.97.1.2 109393 1f2tB 148 3.51e+01 1f2tB 1regX 122 3.54e+01 1regX d.58.27.1 39406 1fw9A 164 3.86e+01 1fw9A d.190.1.1 60059 1tt8A 164 3.86e+01 1vcvA 226 3.87e+01 1fzqA 181 3.94e+01 1hurA c.37.1.8 32060 1wlyA 333 3.97e+01 1fhdA 312 3.99e+01 1taxA c.1.8.3 28915 1gewA 356 4.02e+01 1gewA c.67.1.1 60470 1xhfA 123 4.04e+01 3seb 238 4.07e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1vfsA 386 4.08e+01 b.49.2.2,c.1.6.1 108584,108585 2fh7A 595 4.09e+01 1fh9A 312 4.10e+01 1taxA c.1.8.3 28913 1bia 321 4.13e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1wcdJ 441 4.17e+01 1h8vA 218 4.19e+01 2nlrA b.29.1.11 60795 1yizA 429 4.20e+01 1g0sA 209 4.25e+01 1g0sA d.113.1.1 60187 1d2oA 187 4.25e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1oa2A 218 4.26e+01 b.29.1.11 86721 1xdpA 687 4.26e+01 1zp4A 304 4.29e+01 2hvm 273 4.35e+01 1cnv c.1.8.5 28985 1vk4A 298 4.41e+01 c.72.1.1 100850 1ta3B 303 4.42e+01 c.1.8.3 106732 1nq6A 302 4.46e+01 c.1.8.3 92046 1fc1A 224 4.48e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1larA 575 4.48e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1h7zA 194 4.51e+01 1qhvA b.21.1.1 60733 1fg7A 356 4.51e+01 1gewA c.67.1.1 59819 1bby 69 4.55e+01 2bby a.4.5.15 16149 1f5jA 199 4.59e+01 1axkA b.29.1.11 24342 1r5jA 337 4.67e+01 c.77.1.5 97097 1ri7A 171 4.75e+01 a.4.5.32,d.58.4.2 97504,97505 8rucI 123 4.75e+01 1rboC d.73.1.1 39629 1ede 310 4.78e+01 1b6g c.69.1.8 34662 1aq0A 306 4.85e+01 1aq0A c.1.8.3 28842 1te7A 103 4.90e+01 2his 312 4.94e+01 1taxA c.1.8.3 28918 1qopB 396 4.97e+01 2tysB c.79.1.1 35270 2g50A 530 4.99e+01 1zxxA 319 5.02e+01 1exg 110 5.11e+01 1exg b.2.2.1 22387 1tuoA 464 5.17e+01 1pbjA 125 5.38e+01 d.37.1.1,d.37.1.1 94414,94415 1ydyA 356 5.40e+01 4pfk 319 5.44e+01 3pfk c.89.1.1 35582 1no5A 114 5.47e+01 d.218.1.5 92014 2dfkA 402 5.49e+01 1juvA 193 5.53e+01 c.71.1.1 90912 2adbA 148 5.56e+01 1vjpA 394 5.57e+01 c.2.1.3,d.81.1.3 100828,100829 1s0pA 176 5.58e+01 a.192.1.1 98300 1sr4B 261 5.61e+01 d.151.1.1 105949 1mixA 206 5.62e+01 a.11.2.1,b.55.1.5 79166,79167 1cc1S 283 5.62e+01 2frvA e.19.1.1 43313 1m07A 111 5.65e+01 d.5.1.1 78328 1pp0A 199 5.67e+01 d.103.1.1 104211 2culA 232 5.81e+01 1xkqA 280 5.85e+01 2cxaA 256 5.91e+01 1i8fA 81 5.97e+01 1i8fA b.38.1.1 61959 1pbgA 468 6.10e+01 1e70M c.1.8.4 28946 1o98A 511 6.12e+01 c.105.1.1,c.76.1.3 86684,86685 1a99A 344 6.12e+01 1pot c.94.1.1 35812 1x8dA 104 6.12e+01 1a8q 274 6.16e+01 1brt c.69.1.12 34702 1njhA 119 6.17e+01 b.128.1.1 85787 1vbvA 105 6.24e+01 1b6g 310 6.25e+01 1b6g c.69.1.8 34661 1b5tA 275 6.30e+01 1b5tA c.1.23.1 29676 1iqaA 160 6.47e+01 b.22.1.1 71274 1sn4A 64 6.57e+01 1aho g.3.7.1 44136 1t8qA 336 6.59e+01 c.1.18.3 106669 1wouA 123 6.62e+01 c.47.1.16 109471 1b77A 228 6.71e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2bo4A 397 6.82e+01 1uc7A 125 6.83e+01 c.47.1.1 99163 1eqjA 511 6.83e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 1ft5A 211 6.85e+01 1bvb a.138.1.3 19681 1s29A 92 6.87e+01 a.4.5.46 98373 1s55A 156 6.96e+01 1xseA 295 7.07e+01 1wrjA 156 7.08e+01 1jhsA 188 7.09e+01 d.107.1.1 84172 1enwA 114 7.19e+01 1enwA a.5.4.1 16291 1uekA 275 7.20e+01 d.14.1.5,d.58.26.5 88483,88484 1l6xA 207 7.22e+01 b.1.1.2,b.1.1.2 73642,73643 1vm6A 228 7.23e+01 c.2.1.3,d.81.1.3 108876,108877 2gvkA 317 7.24e+01 1e4mM 501 7.24e+01 1e70M c.1.8.4 59226 2tpt 440 7.28e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1vphA 149 7.29e+01 2aq4A 434 7.39e+01 2d1pA 140 7.46e+01 1dljA 402 7.47e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2ptd 298 7.54e+01 2plc c.1.18.2 29605 1ydmA 187 7.60e+01 1udc 338 7.60e+01 1xel c.2.1.2 29785 1urnA 97 7.74e+01 1urnA d.58.7.1 39153 1q8bA 105 7.75e+01 d.58.4.6 96201 1u09A 476 7.77e+01 e.8.1.4 107545 1xel 338 7.85e+01 1xel c.2.1.2 29786 1id0A 152 7.90e+01 d.122.1.3 66111 1bn8A 420 7.93e+01 1pcl b.80.1.1 28022 2f6hX 419 7.98e+01 1kqzA 273 8.07e+01 c.1.8.5 68844 1toaA 313 8.14e+01 1toaA c.92.2.2 35598 1vckA 115 8.21e+01 1whbA 157 8.24e+01 1duvG 333 8.35e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1ys4A 354 8.43e+01 1ns5A 155 8.51e+01 c.116.1.3 80705 1fr3A 67 8.68e+01 1fr3A b.40.6.1 25436 1s50A 259 8.74e+01 1g291 372 8.76e+01 1g291 1vr4A 103 8.84e+01 1o0yA 260 8.87e+01 c.1.10.1 80756 1tiyA 164 8.94e+01 c.97.1.2 107012 1ylqA 96 8.97e+01 1ri6A 343 8.98e+01 b.69.11.1 97503