% SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 07/18/05_14:54:13 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0308.t04-100-30-dssp-ehl2 Host: orcas.cse.ucsc.edu Wed May 31 11:27:44 2006 % karplus Dir: /projects/compbio/experiments/protein-predict/casp7/T0308 % --------------------------------------------------------------------- % Inserted Files: % Database Files: /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.dssps % MODLIBMOD T0308.t04-100-30-dssp-ehl2 T0308.t04-100-30-dssp-ehl2 model number 1 % Calibration data for 10858 database sequences % 4315 of 10858 scores > calibrate_threshold (0) used. trackmod T0308.t04.w0.5.mod,T0308.t04.dssp-ehl2.mod trackcoeff 1.0,0.3 alphabet protein,EHL2 lambda 1.372608 tau 0.756531 sw 2 dpstyle 0 jumpinprob 1.000000 jumpoutprob 1.000000 subtractnull 4 FIMmethodscore -6 insertmethodscore 0 adjust_score 2 ENDMODLIBMOD