CreatePredAlphaCost pred_alpha2k alpha11 T0307.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0307.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0307.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 30  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 40 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 \


# gimme nice helices!
#HelixConstraint         G15     M28     1
#HelixConstraint         P37     R49     1
#HelixConstraint         Q54     A63     1
#HelixConstraint         A69     R78     1
#HelixConstraint         E81     M95     1
#HelixConstraint         D103    L115    1


# this is where the beta bridge should be
SheetConstraint (T0307)K34 (T0307)K36   (T0307)D102 (T0307)D100   hbond (T0307)I35   10


# beta bridge distances, derived from 2aao (see the README)
Constraint      K34.CA  D102.CA         4.74 4.84 4.94  5
Constraint      K34.CA  I101.CA         5.51 5.61 5.71  5
Constraint      I35.CA  I101.CA         4.82 4.92 5.02  5
Constraint      I35.CA  D100.CA         5.25 5.35 5.45  5
Constraint      K36.CA  D100.CA         4.80 4.90 5.00  5

# fix beta bridge ends
Constraint      K36.CA  D102.CA         9.04 9.14 9.24  8
Constraint      K34.CA  D100.CA         5.66 5.76 5.86  8

# make sure the isoleucines in the beta bridge point in the same direction
Constraint      I35.CB  I101.CB         3.5 4.06 5.0    5


# where to put the helices that flank the beta bridge
Constraint      A25.CA  W109.CA         5.0 7.5 10.0    5
Constraint      L91.CA  W109.CA         5.0 7.5 10.0    5
Constraint      L91.CA  M43.CA          5.0 7.5 10.0    5
Constraint      A25.CA  M43.CA          5.0 7.5 10.0    5