# TARGET T0307 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0307.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 9.66891 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.167 0.135 0.178 0.387 0.035 0.014 0.050 0.008 0.022 0.003 0.001 2 G 0.075 0.021 0.066 0.019 0.083 0.006 0.130 0.240 0.005 0.355 0.001 3 L 0.210 0.145 0.291 0.255 0.037 0.021 0.020 0.003 0.012 0.005 0.001 4 G 0.087 0.026 0.104 0.057 0.138 0.007 0.080 0.248 0.003 0.248 0.001 5 R 0.261 0.276 0.206 0.105 0.072 0.035 0.013 0.007 0.020 0.004 0.001 6 Q 0.135 0.399 0.263 0.069 0.044 0.030 0.020 0.002 0.035 0.002 0.001 7 S 0.099 0.380 0.375 0.026 0.055 0.039 0.004 0.003 0.014 0.002 0.002 8 L 0.162 0.510 0.176 0.038 0.066 0.017 0.006 0.002 0.021 0.002 0.001 9 N 0.196 0.342 0.184 0.034 0.067 0.095 0.030 0.003 0.043 0.004 0.002 10 I 0.233 0.452 0.169 0.066 0.021 0.033 0.003 0.001 0.021 0.001 0.001 11 M 0.117 0.387 0.258 0.035 0.070 0.045 0.022 0.003 0.059 0.002 0.001 12 T 0.113 0.312 0.409 0.035 0.024 0.074 0.010 0.003 0.014 0.002 0.004 13 F 0.094 0.449 0.226 0.060 0.083 0.045 0.014 0.002 0.024 0.004 0.001 14 S 0.086 0.214 0.454 0.038 0.105 0.032 0.007 0.003 0.038 0.022 0.001 15 G 0.903 0.002 0.008 0.022 0.005 0.001 0.013 0.032 0.001 0.013 0.001 16 Q 0.942 0.004 0.007 0.042 0.001 0.002 0.001 0.001 0.001 0.001 0.001 17 E 0.948 0.011 0.018 0.017 0.001 0.003 0.001 0.001 0.002 0.001 0.001 18 L 0.984 0.002 0.008 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 19 T 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 A 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 K 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 M 0.913 0.003 0.002 0.077 0.001 0.002 0.001 0.001 0.001 0.001 0.001 25 A 0.758 0.031 0.055 0.130 0.007 0.010 0.005 0.002 0.002 0.001 0.001 26 K 0.908 0.006 0.017 0.056 0.004 0.002 0.004 0.001 0.001 0.001 0.001 27 S 0.585 0.060 0.020 0.254 0.061 0.004 0.007 0.006 0.003 0.001 0.001 28 M 0.343 0.447 0.095 0.052 0.021 0.012 0.003 0.001 0.027 0.001 0.001 29 V 0.198 0.598 0.094 0.023 0.008 0.033 0.001 0.001 0.045 0.001 0.001 30 M 0.142 0.344 0.320 0.045 0.009 0.088 0.007 0.001 0.043 0.001 0.001 31 A 0.326 0.336 0.108 0.099 0.026 0.039 0.005 0.001 0.058 0.002 0.001 32 D 0.095 0.040 0.184 0.326 0.017 0.081 0.196 0.003 0.051 0.005 0.002 33 G 0.018 0.003 0.016 0.025 0.033 0.001 0.150 0.627 0.001 0.126 0.001 34 K 0.092 0.311 0.409 0.078 0.029 0.039 0.018 0.002 0.019 0.001 0.002 35 I 0.014 0.304 0.626 0.006 0.008 0.027 0.002 0.001 0.010 0.001 0.001 36 K 0.006 0.056 0.894 0.001 0.003 0.019 0.001 0.001 0.021 0.001 0.001 37 P 0.984 0.001 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 A 0.990 0.001 0.001 0.005 0.001 0.001 0.001 0.002 0.001 0.001 0.001 39 E 0.986 0.001 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 I 0.993 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 A 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 V 0.979 0.002 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 M 0.945 0.007 0.007 0.033 0.001 0.003 0.001 0.001 0.002 0.001 0.001 44 T 0.960 0.005 0.014 0.014 0.001 0.002 0.001 0.001 0.001 0.001 0.001 45 R 0.986 0.001 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 E 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 F 0.975 0.002 0.003 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 M 0.985 0.003 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 R 0.947 0.007 0.004 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 F 0.356 0.006 0.019 0.608 0.001 0.001 0.005 0.001 0.003 0.001 0.001 51 G 0.064 0.001 0.009 0.012 0.006 0.002 0.223 0.647 0.002 0.034 0.001 52 I 0.392 0.159 0.288 0.090 0.021 0.031 0.005 0.001 0.008 0.004 0.001 53 L 0.319 0.090 0.355 0.089 0.016 0.092 0.008 0.002 0.021 0.007 0.001 54 Q 0.917 0.013 0.028 0.018 0.006 0.009 0.002 0.001 0.004 0.001 0.001 55 D 0.934 0.002 0.010 0.039 0.002 0.005 0.004 0.003 0.001 0.001 0.001 56 Q 0.916 0.003 0.003 0.068 0.001 0.004 0.002 0.001 0.003 0.001 0.001 57 V 0.967 0.005 0.007 0.017 0.001 0.002 0.001 0.001 0.001 0.001 0.001 58 D 0.990 0.001 0.001 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 59 L 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 L 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 K 0.987 0.001 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 A 0.722 0.001 0.004 0.268 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 S 0.459 0.035 0.293 0.123 0.009 0.024 0.021 0.008 0.025 0.002 0.001 65 D 0.514 0.012 0.057 0.360 0.005 0.008 0.035 0.005 0.001 0.003 0.001 66 S 0.214 0.085 0.143 0.302 0.070 0.031 0.075 0.051 0.017 0.011 0.001 67 I 0.174 0.284 0.401 0.050 0.023 0.040 0.004 0.001 0.023 0.001 0.001 68 E 0.211 0.171 0.446 0.036 0.031 0.061 0.008 0.002 0.025 0.009 0.001 69 A 0.966 0.005 0.012 0.009 0.003 0.002 0.001 0.001 0.001 0.001 0.001 70 S 0.981 0.001 0.003 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 Q 0.983 0.002 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 L 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 I 0.982 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 A 0.988 0.001 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 R 0.424 0.001 0.001 0.570 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 M 0.069 0.066 0.596 0.148 0.012 0.058 0.012 0.002 0.036 0.001 0.001 80 D 0.151 0.045 0.510 0.023 0.019 0.176 0.028 0.002 0.035 0.012 0.001 81 E 0.988 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 E 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 R 0.980 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 K 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 Y 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 S 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 Y 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 L 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 G 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 V 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 I 0.978 0.002 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 M 0.948 0.007 0.016 0.024 0.001 0.002 0.001 0.001 0.002 0.001 0.001 96 A 0.774 0.018 0.057 0.116 0.007 0.009 0.009 0.004 0.004 0.001 0.001 97 S 0.627 0.056 0.125 0.151 0.012 0.013 0.005 0.001 0.008 0.003 0.001 98 D 0.220 0.029 0.069 0.596 0.014 0.020 0.030 0.003 0.018 0.001 0.001 99 G 0.052 0.006 0.025 0.013 0.080 0.001 0.023 0.306 0.002 0.491 0.001 100 D 0.192 0.083 0.286 0.220 0.026 0.098 0.043 0.004 0.024 0.002 0.022 101 I 0.122 0.277 0.420 0.093 0.022 0.047 0.005 0.001 0.011 0.002 0.001 102 D 0.036 0.101 0.690 0.006 0.019 0.099 0.002 0.001 0.043 0.003 0.001 103 D 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 N 0.963 0.001 0.001 0.032 0.001 0.001 0.001 0.002 0.001 0.001 0.001 105 E 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 W 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 T 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 L 0.969 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 C 0.151 0.001 0.007 0.839 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 G 0.005 0.001 0.001 0.010 0.001 0.001 0.514 0.464 0.001 0.005 0.001 118 L 0.005 0.334 0.558 0.001 0.008 0.026 0.002 0.001 0.065 0.001 0.001 119 P 0.027 0.006 0.869 0.002 0.001 0.076 0.001 0.001 0.002 0.001 0.017 120 T 0.460 0.122 0.274 0.060 0.022 0.040 0.004 0.004 0.010 0.001 0.002 121 M 0.603 0.157 0.113 0.041 0.043 0.016 0.006 0.004 0.016 0.002 0.001 122 T 0.554 0.101 0.223 0.052 0.021 0.033 0.003 0.001 0.009 0.002 0.001 123 V 0.739 0.137 0.050 0.030 0.010 0.019 0.001 0.001 0.012 0.001 0.001 124 M 0.772 0.094 0.070 0.023 0.005 0.024 0.001 0.001 0.010 0.001 0.001 125 E 0.797 0.062 0.059 0.017 0.017 0.018 0.010 0.002 0.016 0.001 0.001 126 A 0.889 0.020 0.035 0.025 0.007 0.012 0.003 0.002 0.003 0.001 0.002 127 I 0.776 0.053 0.023 0.122 0.006 0.009 0.003 0.001 0.006 0.001 0.001 128 N 0.659 0.044 0.063 0.134 0.019 0.023 0.040 0.004 0.012 0.003 0.001 129 N 0.219 0.020 0.027 0.432 0.013 0.060 0.166 0.026 0.036 0.002 0.001 130 M 0.382 0.081 0.172 0.242 0.010 0.047 0.044 0.006 0.014 0.002 0.001 131 K 0.559 0.112 0.200 0.069 0.019 0.015 0.013 0.004 0.006 0.004 0.001 132 N 0.188 0.019 0.060 0.329 0.008 0.109 0.198 0.013 0.074 0.001 0.001 133 L 0.392 0.081 0.236 0.198 0.007 0.050 0.017 0.002 0.016 0.001 0.001