a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0307 PG_1108, Porphyromonas gingivalis, 133 res
- gi|34540841|ref|NP_905320.1|_1:133 hypothetical protein PG1108 [Porphyromonas gingivalis W83]
- gi|34397155|gb|AAQ66219.1| hypothetical protein PG_1108 [Porphyromonas gingivalis W83]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MGLGRQSLNIMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD
   2 MGLGRQSLNIMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 SIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNM
   2 SIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNM


         
        
   1 KNL
   2 KNL