# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1odfA 290 5.97e-02 c.37.1.6 92782 2db0A 253 1.05e-01 1svmA 377 1.46e-01 1oz9A 150 2.42e-01 d.92.1.15 93808 1h1dA 221 2.61e-01 c.66.1.1 83452 1ff9A 450 4.33e-01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1edg 380 7.62e-01 1edg c.1.8.3 28807 256bA 106 9.95e-01 256bA a.24.3.1 16539 1zczA 464 1.10e+00 1ugpA 203 1.13e+00 d.149.1.1 107831 1z5hA 780 1.19e+00 2gshA 414 1.25e+00 1yz4A 160 1.57e+00 1pmi 440 1.72e+00 1pmi b.82.1.3 28114 1zgyA 272 1.75e+00 1t1uA 639 1.96e+00 1e7lA 157 1.97e+00 1en7A a.140.4.1,d.4.1.5 64728,64729 2b0oE 301 3.67e+00 2ap1A 327 4.19e+00 1l3iA 192 4.26e+00 c.66.1.22 77676 1gsoA 431 4.33e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1rcwA 231 4.49e+00 a.132.1.4 97299 2fpqA 444 4.57e+00 1fpzA 212 5.23e+00 1fpzA c.45.1.1 59976 1wu7A 434 5.91e+00 1xm3A 264 6.03e+00 1b79A 119 6.24e+00 1b79A a.81.1.1 18451 1gpmA 525 6.45e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1on3A 523 6.63e+00 c.14.1.4,c.14.1.4 87107,87108 1xwmA 217 6.90e+00 1r9jA 673 7.03e+00 1uc7A 125 7.32e+00 c.47.1.1 99163 2cosA 54 7.65e+00 1q74A 303 8.20e+00 c.134.1.1 96019 2fwhA 134 8.60e+00 1a6s 87 8.68e+00 1a6s a.61.1.4 18134 1vefA 395 8.77e+00 1dkqA 410 8.92e+00 1dklA c.60.1.2 33998 1dkmA 410 9.08e+00 1dklA c.60.1.2 34000 1zchA 255 9.73e+00 1pfvA 551 9.93e+00 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2bl0C 142 1.03e+01 2gb7A 305 1.06e+01 1z8oA 404 1.06e+01 1apyB 141 1.08e+01 1apyB 1zkdA 387 1.10e+01 1otvA 259 1.10e+01 a.132.1.4 93526 1oksA 56 1.12e+01 a.8.5.1 93271 2a3qA 170 1.15e+01 2czvC 120 1.16e+01 2a97A 439 1.17e+01 1pjr 724 1.18e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1o5zA 442 1.20e+01 c.59.1.2,c.72.2.2 92530,92531 1tkkA 366 1.22e+01 c.1.11.2,d.54.1.1 107089,107090 2czdA 208 1.25e+01 1uwcA 261 1.29e+01 c.69.1.17 100101 1rrzA 86 1.34e+01 a.7.10.1 105086 1u61A 138 1.35e+01 a.149.1.1 107696 1hp1A 516 1.39e+01 d.114.1.1,d.159.1.2 70976,70977 1me8A 503 1.39e+01 c.1.5.1 79028 1ehyA 294 1.40e+01 1ehyA c.69.1.11 34693 1auiB 169 1.41e+01 1auiB a.39.1.5 17325 2fkiA 126 1.42e+01 1w6sB 74 1.42e+01 1gweA 503 1.43e+01 e.5.1.1 70667 2b8iA 77 1.49e+01 1kpsB 171 1.52e+01 a.118.12.1 68787 1g4wR 383 1.57e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 2fk8A 318 1.61e+01 1wx1A 335 1.63e+01 1rk6A 496 1.66e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1psrA 100 1.75e+01 1psrA a.39.1.2 17180 1wmwA 330 1.77e+01 1wstA 417 1.82e+01 1l7mA 211 1.83e+01 c.108.1.4 73664 2a61A 145 1.92e+01 2fbwA 621 1.93e+01 1r85A 379 1.93e+01 c.1.8.3 104839 1np3A 338 1.99e+01 a.100.1.2,c.2.1.6 85946,85947 1avsA 90 2.03e+01 1cll a.39.1.5 17226 7aatA 401 2.06e+01 1ajsA c.67.1.1 34250 1j55A 95 2.11e+01 a.39.1.2 77078 1wvfA 520 2.11e+01 2bo3A 94 2.11e+01 1ygmA 118 2.17e+01 2gfnA 209 2.19e+01 1jy5A 212 2.22e+01 d.124.1.1 71940 1y10A 407 2.23e+01 1eu1A 780 2.23e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1ei6A 406 2.28e+01 c.76.1.4 90443 1ve1A 304 2.31e+01 1dd9A 338 2.33e+01 1dd9A e.13.1.1 43254 1jfzA 154 2.36e+01 a.149.1.1 66655 1jogA 146 2.38e+01 a.24.16.2 77142 2h88A 621 2.40e+01 1ls1A 295 2.41e+01 a.24.13.1,c.37.1.10 78170,78171 1qv1A 195 2.42e+01 a.39.1.5 96347 1z2wA 192 2.43e+01 1dzkA 157 2.56e+01 1obpA b.60.1.1 27096 1unkA 87 2.60e+01 1cei a.28.2.1 16935 1ctj 89 2.68e+01 1ctj a.3.1.1 15798 1hb6A 86 2.69e+01 a.11.1.1 70959 1gw5S 142 2.69e+01 d.110.4.2 70633 8abp 306 2.75e+01 8abp c.93.1.1 35647 1ulyA 192 2.82e+01 1h16A 759 2.86e+01 c.7.1.1 76462 1su8A 636 2.91e+01 e.26.1.2 98999 1ir6A 424 3.03e+01 c.107.1.2 71342 1jg1A 235 3.04e+01 c.66.1.7 66661 2fcjA 119 3.07e+01 1tr8A 102 3.10e+01 1c44A 123 3.11e+01 1qndA d.106.1.1 40795 1gnlA 544 3.11e+01 e.26.1.1 70287 1wgxA 73 3.12e+01 1zs9A 261 3.20e+01 1rxwA 336 3.21e+01 a.60.7.1,c.120.1.2 98059,98060 1v71A 323 3.23e+01 1jb0I 38 3.25e+01 1jb0I f.23.17.1 62826 1j5wA 298 3.25e+01 d.104.1.1 71589 1oe4A 247 3.39e+01 c.18.1.3 86895 1zpyA 95 3.40e+01 1i1wA 303 3.46e+01 c.1.8.3 76732 1k6kA 143 3.53e+01 a.174.1.1 77274 1hssA 124 3.58e+01 1bea a.52.1.2 17819 1floA 422 3.59e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1j1qA 261 3.61e+01 d.165.1.1 90768 2aqjA 538 3.66e+01 1xnfA 275 3.66e+01 1gnwA 211 3.69e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1v4pA 157 3.90e+01 1wiwA 290 3.92e+01 1zt2B 212 3.92e+01 1jmsA 381 3.92e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1v4vA 376 3.99e+01 c.87.1.3 100313 1pxqA 35 4.08e+01 j.5.1.2 104382 1iukA 140 4.09e+01 c.2.1.8 83712 1nynA 131 4.10e+01 d.235.1.1 86410 1n4qB 377 4.12e+01 a.102.4.3 91636 1dkzA 219 4.15e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1ynpA 317 4.17e+01 2iu5A 195 4.19e+01 1ly1A 181 4.23e+01 c.37.1.1 74334 1fpoA 171 4.24e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2gpiA 91 4.26e+01 1xouB 95 4.28e+01 1jkxA 212 4.29e+01 c.65.1.1 66813 1ddgA 374 4.30e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2f6mB 109 4.31e+01 2cp8A 54 4.32e+01 1jjfA 268 4.34e+01 c.69.1.2 66765 1z8sA 146 4.38e+01 1vimA 200 4.44e+01 c.80.1.3 100758 1svy 114 4.63e+01 1svy d.109.1.1 40831 2bjfA 329 4.65e+01 1v54G 85 4.73e+01 f.23.2.1 100328 1te5A 257 4.74e+01 d.153.1.1 106795 2d13A 227 4.83e+01 1cuk 203 4.83e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2au3A 407 4.87e+01 1o26A 232 4.90e+01 d.207.1.1 86566 1sgmA 191 4.91e+01 a.4.1.9,a.121.1.1 105537,105538 1ofuX 119 4.95e+01 c.37.1.22 86976 2akzA 439 4.95e+01 1ejgA 46 5.05e+01 1cbn g.13.1.1 44618 1h5wA 309 5.07e+01 e.27.1.1 65635 1wwlA 312 5.08e+01 1j2jB 45 5.14e+01 a.7.8.1 84017 1q0pA 223 5.15e+01 c.62.1.1 95507 1z7uA 112 5.15e+01 1mqoA 227 5.18e+01 d.157.1.1 103846 2b7uA 257 5.19e+01 1dxrH 258 5.28e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1ohzB 60 5.29e+01 a.139.1.1 93044 1kzyC 259 5.31e+01 c.15.1.4,c.15.1.4 73383,73384 1twyA 290 5.36e+01 1rm6C 161 5.38e+01 1yoeA 322 5.39e+01 2aa4A 289 5.42e+01 1chuA 540 5.44e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2f8xM 63 5.47e+01 1rqtA 37 5.51e+01 a.108.1.1 97771 1zarA 282 5.55e+01 2fbnA 198 5.57e+01 1sz2A 332 5.58e+01 1uvqA 197 5.61e+01 b.1.1.2,d.19.1.1 100062,100063 1rvkA 382 5.65e+01 c.1.11.2,d.54.1.1 97928,97929 1s1fA 406 5.79e+01 1xs5A 241 5.86e+01 1ad1A 266 5.86e+01 1aj2 c.1.21.1 29668 1lfkA 398 5.89e+01 a.104.1.1 77926 1w68A 390 6.02e+01 a.25.1.2 109216 1k8kA 418 6.03e+01 c.55.1.1,c.55.1.1 68305,68306 1hnjA 317 6.06e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1rr7A 129 6.06e+01 a.4.1.14 105075 1vg8A 207 6.08e+01 c.37.1.8 108606 2gsq 202 6.10e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1ihbA 162 6.17e+01 1bd8 d.211.1.1 19161 1hrhA 136 6.17e+01 1rthA c.55.3.1 33577 1sdiA 213 6.25e+01 a.198.1.1 105437 1d3yA 301 6.35e+01 1d3yA e.12.1.1 43252 1fyhB 229 6.47e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1lr7A 74 6.47e+01 g.3.11.3,g.68.1.1 84679,84680 1ois 223 6.49e+01 1a36A e.15.1.1 43267 2avdA 219 6.49e+01 1iruK 201 6.51e+01 d.153.1.4 71362 1ltqA 301 6.55e+01 c.108.1.9,c.37.1.1 78208,78209 1cg5A 141 6.68e+01 1abwA a.1.1.2 15406 1o6zA 303 6.80e+01 c.2.1.5,d.162.1.1 81107,81108 1xg5A 279 6.88e+01 1i2aA 219 6.92e+01 e.24.1.1 90660 1tzzA 392 6.95e+01 1s8iA 121 6.98e+01 a.133.1.2 98735 1eu8A 409 7.00e+01 1eu8A c.94.1.1 59502 1s5lU 134 7.01e+01 1nijA 318 7.04e+01 c.37.1.10,d.237.1.1 85741,85742 2ck3A 510 7.05e+01 1yge 839 7.06e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1l1qA 186 7.15e+01 c.61.1.1 77653 1in6A 334 7.18e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1v8aA 265 7.19e+01 c.72.1.2 100494 1t3wA 148 7.20e+01 1ww9A 392 7.21e+01 2f4mA 295 7.21e+01 1wxiA 275 7.25e+01 2cnqA 306 7.31e+01 1vlaA 150 7.34e+01 d.227.1.2 108735 1zjjA 263 7.34e+01 1jk0B 345 7.47e+01 a.25.1.2 63143 1ex0A 731 7.53e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1k66A 149 7.54e+01 c.23.1.1 90941 1gu7A 364 7.54e+01 b.35.1.2,c.2.1.1 83321,83322 2c46A 241 7.60e+01 1in4A 334 7.61e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1obdA 306 7.71e+01 d.143.1.1 86767 1x9zA 188 7.87e+01 1rfyA 102 7.95e+01 1vrmA 325 7.96e+01 2rslA 140 7.96e+01 2rslA c.53.1.1 33345 1wa8A 99 7.97e+01 1sszA 34 8.00e+01 j.35.1.1 105999 1r9dA 787 8.01e+01 c.7.1.1 104865 1vhtA 218 8.03e+01 c.37.1.1 100700 1ww8A 439 8.04e+01 1uz3A 102 8.05e+01 2fp4B 395 8.05e+01 1dm5A 315 8.06e+01 1avc a.65.1.1 18186 1nh2D 121 8.07e+01 a.32.1.1,b.56.1.1 91876,91877 1v74A 107 8.08e+01 d.243.1.1 100442 2g09A 297 8.16e+01 2d9iA 96 8.32e+01 1k9uA 78 8.40e+01 a.39.1.10 84348 1ztsA 139 8.44e+01 1q87A 221 8.49e+01 e.47.1.1 96192 1eueA 86 8.49e+01 1cyo d.120.1.1 59504 1mexH 215 8.51e+01 b.1.1.1,b.1.1.2 91257,91258 1f1xA 322 8.51e+01 d.32.1.3,d.32.1.3 83208,83209 2a3nA 355 8.51e+01 2bk9A 153 8.52e+01 1pprM 312 8.58e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1ouvA 273 8.70e+01 a.118.18.1 93570 2bfdA 400 8.71e+01 1dro 122 8.79e+01 1btn b.55.1.1 26954 1yn9A 169 8.80e+01 1ji1A 637 8.99e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668