# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z91A 147 1.30e-01 1tuwA 109 8.98e-01 d.58.4.8 107346 2a61A 145 9.57e-01 1fyhB 229 1.85e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 2a3qA 170 1.92e+00 1e6yA 569 2.68e+00 1mroA a.89.1.1,d.58.31.2 18529,39447 1df4A 68 2.78e+00 1aikN h.3.2.1 45719 1nh2D 121 3.41e+00 a.32.1.1,b.56.1.1 91876,91877 2g0qA 173 4.06e+00 2gd9A 189 4.16e+00 1mwpA 96 4.27e+00 1mwpA d.170.2.1 42453 1wa8A 99 5.07e+00 2bl0C 142 5.62e+00 1i7wB 151 5.79e+00 1i7wB j.71.1.1 61910 1y10A 407 5.93e+00 2fkkA 206 6.21e+00 1g24A 211 6.69e+00 1g24A d.166.1.1 42270 1zpyA 95 6.80e+00 2fbhA 146 7.59e+00 2b5gA 171 7.73e+00 1wgsA 133 7.88e+00 1i5jA 79 8.05e+00 1i5jA j.39.1.1 61788 1s0yA 76 8.06e+00 d.80.1.1 98314 2fbiA 142 8.76e+00 1xewY 172 8.79e+00 1oksA 56 8.82e+00 a.8.5.1 93271 2ltnA 181 8.88e+00 1led b.29.1.1 24024 2f6mB 109 9.31e+00 256bA 106 9.90e+00 256bA a.24.3.1 16539 2b3hA 329 9.98e+00 1rrzA 86 1.01e+01 a.7.10.1 105086 1gt1A 159 1.24e+01 b.60.1.1 90515 1v54J 59 1.25e+01 f.23.4.1 100331 1rr7A 129 1.26e+01 a.4.1.14 105075 1v8qA 85 1.42e+01 b.84.4.1 108428 1z7uA 112 1.51e+01 1g8mA 593 1.65e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1l3eB 101 1.66e+01 g.53.1.1 73536 1sb2A 133 1.82e+01 2fwhA 134 1.93e+01 1uc7A 125 1.95e+01 c.47.1.1 99163 1s28A 132 2.00e+01 d.198.1.1 105223 1pmi 440 2.08e+01 1pmi b.82.1.3 28114 1ufkA 254 2.09e+01 c.66.1.39 99340 1mexH 215 2.18e+01 b.1.1.1,b.1.1.2 91257,91258 1gk9A 260 2.33e+01 d.153.1.2 65246 1np6A 174 2.35e+01 c.37.1.10 85954 1unkA 87 2.39e+01 1cei a.28.2.1 16935 1v74A 107 2.42e+01 d.243.1.1 100442 1nnvA 110 2.42e+01 d.17.7.1 92012 1uunA 184 2.46e+01 f.6.1.2 100012 1xrxA 50 2.49e+01 2ar0A 541 2.55e+01 1wm1A 317 2.62e+01 c.69.1.7 109405 1zs9A 261 2.64e+01 1vjhA 122 2.66e+01 d.129.3.1 100811 1pinA 163 2.67e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1m4vA 204 2.72e+01 b.40.2.2,d.15.6.1 74459,74460 1xouB 95 2.74e+01 1zchA 255 2.77e+01 1yqgA 263 2.82e+01 1agg 48 2.85e+01 1agg g.3.6.2 44102 1fs0E 138 2.94e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1nrjA 158 2.96e+01 d.110.4.4 86124 1pxqA 35 3.06e+01 j.5.1.2 104382 1k9uA 78 3.07e+01 a.39.1.10 84348 2ahmA 88 3.15e+01 1jb0I 38 3.25e+01 1jb0I f.23.17.1 62826 2axtF 45 3.28e+01 2cosA 54 3.29e+01 1mhnA 59 3.35e+01 b.34.9.1 84964 2c9wA 169 3.41e+01 1p80A 753 3.52e+01 c.23.16.3,e.5.1.1 94337,94338 2a4hA 126 3.58e+01 1gyhA 318 3.61e+01 b.67.2.1 70757 1h1dA 221 3.62e+01 c.66.1.1 83452 2b8iA 77 3.84e+01 2f1kA 279 3.87e+01 2gboA 104 3.88e+01 2cs2A 134 3.92e+01 1nynA 131 3.96e+01 d.235.1.1 86410 2cw6A 298 3.99e+01 2d9iA 96 4.05e+01 1v54G 85 4.09e+01 f.23.2.1 100328 1s8nA 205 4.13e+01 c.23.1.1 105374 1xneA 113 4.21e+01 1jvr 137 4.24e+01 1jvr a.61.1.2 18132 1psrA 100 4.25e+01 1psrA a.39.1.2 17180 2agmA 167 4.30e+01 1lfkA 398 4.35e+01 a.104.1.1 77926 6rlxB 28 4.41e+01 g.1.1.1 43988 1xaoA 121 4.45e+01 2ganA 190 4.48e+01 1tu9A 134 4.50e+01 a.1.1.2 107320 1y2oA 250 4.51e+01 1svy 114 4.72e+01 1svy d.109.1.1 40831 1whrA 124 4.72e+01 1nxhA 126 4.73e+01 a.200.1.1 92300 1ss4A 153 4.83e+01 d.32.1.6 105976 1wz3A 96 4.84e+01 1pzqA 60 4.91e+01 a.34.3.1 95466 1k8kF 168 4.92e+01 d.198.2.1 68312 1vhsA 175 4.95e+01 d.108.1.1 100698 1d8hA 311 5.00e+01 1d8iA d.63.1.1 39544 1jfiA 98 5.01e+01 1jfiA a.22.1.3 62936 2fp7B 172 5.05e+01 2f4iA 197 5.08e+01 1u7kA 131 5.18e+01 3nul 130 5.18e+01 3nul d.110.1.1 40891 1js3A 486 5.18e+01 c.67.1.6 67215 1y5oA 115 5.28e+01 1o97C 264 5.31e+01 c.26.2.3 81232 1krhA 338 5.50e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1jk0B 345 5.57e+01 a.25.1.2 63143 1w2lA 99 5.58e+01 2ap1A 327 5.61e+01 1l8dA 112 5.90e+01 h.4.12.1 73687 1brfA 53 5.97e+01 1rb9 g.41.5.1 45236 1txlA 215 6.01e+01 b.60.1.4 107429 1z9hA 290 6.07e+01 1pl5A 142 6.48e+01 h.1.23.1 104186 1np3A 338 6.48e+01 a.100.1.2,c.2.1.6 85946,85947 1rh5B 74 6.56e+01 f.23.28.1 97465 7odcA 424 6.60e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 2c9lY 63 6.65e+01 1whmA 92 6.68e+01 1rqtA 37 6.71e+01 a.108.1.1 97771 1nkzB 41 6.77e+01 f.3.1.1 80612 2bf6A 449 6.91e+01 1twfK 120 7.02e+01 1lm8B 118 7.14e+01 d.15.1.1 74033 1g4fA 86 7.17e+01 1qubA g.18.1.1 44873 2bh8A 101 7.17e+01 1q74A 303 7.19e+01 c.134.1.1 96019 1q8fA 313 7.22e+01 c.70.1.1 96203 2g5cA 281 7.23e+01 1hfeS 123 7.38e+01 1hfeS a.137.4.1 19640 1whsA 255 7.41e+01 1ivyA c.69.1.5 34649 1ctj 89 7.43e+01 1ctj a.3.1.1 15798 2fkiA 126 7.58e+01 1cdcA 99 7.64e+01 1cdcA b.1.1.1 19746 2as0A 396 7.69e+01 1avsA 90 7.69e+01 1cll a.39.1.5 17226 1e3oC 160 7.77e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1nt2B 258 7.80e+01 a.183.1.1 86150 1aquA 297 7.81e+01 1aquA c.37.1.5 31942 1dszA 86 7.82e+01 2nllB g.39.1.2 45129 1gnkA 112 7.98e+01 2pii d.58.5.1 39073 1d7qA 143 7.99e+01 1d7qA b.40.4.5 25331 1jogA 146 8.11e+01 a.24.16.2 77142 1l7yA 94 8.16e+01 d.15.1.6 73676 1otgA 125 8.22e+01 1otgA d.80.1.2 39831 1qvcA 145 8.27e+01 3ullA b.40.4.3 25284 2cfxA 144 8.30e+01 2gwhA 298 8.32e+01 1xnfA 275 8.43e+01 1aapA 58 8.56e+01 1bpi g.8.1.1 44543 1u61A 138 8.57e+01 a.149.1.1 107696 1v63A 101 8.81e+01 a.21.1.1 108391 1j1bA 420 8.82e+01 d.144.1.7 90758 1e19A 314 8.85e+01 1b7bA c.73.1.1 34967 2czvC 120 8.86e+01 1vehA 92 8.87e+01 2cg4A 152 8.97e+01