Best Alignments for T0307

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1n25A/T0307-1n25A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1n25A/T0307-1n25A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2349e+001.98e-04 c.37.1.20
1y6iA/T0307-1y6iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y6iA/T0307-1y6iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6385e+003.86e-08
1ff9A/T0307-1ff9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ff9A/T0307-1ff9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1106e+003.47e-02 1ff9A c.2.1.3
d.81.1.2
1svmA/T0307-1svmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1svmA/T0307-1svmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4729e+002.44e-04
2ap1A/T0307-2ap1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0307-2ap1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7766e+004.68e-04
487dL/T0307-487dL-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 487dL/T0307-487dL-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2600e+003.64e+02 1mmsA i.1.1.2
256bA/T0307-256bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 256bA/T0307-256bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7374e+004.87e-03 256bA a.24.3.1
1auiB/T0307-1auiB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1auiB/T0307-1auiB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8935e+002.62e-08 1auiB a.39.1.5
2gwxA/T0307-2gwxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gwxA/T0307-2gwxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5526e+001.92e+02 2prgA a.123.1.1
2awhA/T0307-2awhA-t04-local-adpstyle1.a2m 2awhA/T0307-2awhA-t04-local-adpstyle1.al 6.9325e+002.02e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001