# List of top-scoring protein chains for T0306.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xpkA 388 1.52e+00 1xpmA 396 1.54e+00 1tvzA 388 1.82e+00 c.95.1.2,c.95.1.2 107367,107368 1xpkC 388 1.83e+00 1hxmA 229 2.91e+00 1hxmA b.1.1.1,b.1.1.2 61367,61368 1bo4A 168 3.89e+00 1bo4A d.108.1.1 40798 1q5qH 235 6.75e+00 d.153.1.4 95911 1q5rH 294 7.61e+00 d.153.1.4 95925 1j2qH 202 1.07e+01 d.153.1.4 84036 2c3mA 1231 1.35e+01 1zsvA 349 1.78e+01 1u3iA 211 1.96e+01 1rypJ 204 1.97e+01 d.153.1.4 41878 1g0uI 205 1.98e+01 d.153.1.4 41891 1iruJ 205 2.84e+01 d.153.1.4 71361 1zk7A 467 3.21e+01 1bruP 241 3.24e+01 5ptp b.47.1.2 26273 1u0uA 397 3.27e+01 1xesA 413 3.56e+01 1vluA 468 3.62e+01 c.82.1.1 108864 1ehkA 562 3.76e+01 1ehkA f.24.1.1 43624 1xmeA 568 3.78e+01 1j5yA 187 3.86e+01 a.4.5.1,d.94.2.1 71592,71593 1p3wA 404 3.95e+01 c.67.1.3 87752 1o54A 277 4.06e+01 c.66.1.13 92482 2a45G 57 4.52e+01 1pgl1 185 4.60e+01 2ae0X 345 4.66e+01 2gaeA 346 4.69e+01 1bmv1 198 4.70e+01 1bmv1 1jy2N 53 4.85e+01 h.1.8.1 67440 1x68A 76 4.85e+01 1t3qB 788 5.12e+01 d.41.1.1,d.133.1.1 106369,106370 1eikA 77 5.28e+01 1eikA d.78.1.1 39751 1x5fA 120 5.37e+01 1ov3A 138 5.54e+01 b.34.2.1,b.34.2.1 87451,87452 1trf 76 5.66e+01 1ncx a.39.1.5 17247 1i7fA 292 5.69e+01 1i7fA d.193.1.1 61888 2exjA 535 5.76e+01 1q7hA 153 5.77e+01 b.122.1.1,d.17.6.2 96042,96043 1ee0A 402 5.90e+01 1bi5A c.95.1.2,c.95.1.2 36007,36008 1ng2A 193 6.26e+01 b.34.2.1,b.34.2.1 85660,85661 1hmjA 78 6.50e+01 d.78.1.1 39752 1oebA 62 6.51e+01 b.34.2.1 86909 1oe8A 211 6.55e+01 a.45.1.1,c.47.1.5 86905,86906 1sqrA 95 6.55e+01 1avsA 90 6.58e+01 1cll a.39.1.5 17226 1h3hA 60 6.64e+01 b.34.2.1 83468 1utiA 58 6.79e+01 b.34.2.1 99962 1uk8A 282 7.11e+01 c.69.1.10 107907 2d0nA 59 7.13e+01 1luaA 287 7.24e+01 c.2.1.7,c.58.1.4 78216,78217 1xrsA 516 7.56e+01 1zd0A 150 7.78e+01 1o58A 303 7.82e+01 c.79.1.1 92491 1yueA 427 7.83e+01 1uecA 193 7.97e+01 b.34.2.1,b.34.2.1 88481,88482 1wlpB 138 7.99e+01 2afwA 329 8.02e+01 2afuA 329 8.02e+01 2afsA 329 8.02e+01 2gokA 429 8.28e+01 1kbvA 327 8.40e+01 b.6.1.3,b.6.1.3 68395,68396 2gfhA 260 8.91e+01