# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xpkC 388 7.21e-01 1xpmA 396 7.96e-01 2ae0X 345 2.33e+00 1pgl1 185 3.62e+00 2gfhA 260 3.98e+00 1zd0A 150 5.10e+00 1xesA 413 5.12e+00 2c3mA 1231 5.14e+00 2gaeA 346 5.97e+00 1zk7A 467 6.17e+00 1oe8A 211 6.39e+00 a.45.1.1,c.47.1.5 86905,86906 1yueA 427 6.59e+00 1q7hA 153 7.71e+00 b.122.1.1,d.17.6.2 96042,96043 2napA 723 7.72e+00 2napA b.52.2.2,c.81.1.1 26926,35334 1t3qB 788 1.26e+01 d.41.1.1,d.133.1.1 106369,106370 2akaB 299 1.29e+01 1xrsA 516 1.31e+01 2biiA 424 1.34e+01 2cxxA 190 1.34e+01 1o97D 320 1.35e+01 c.26.2.3,c.31.1.2 81233,81234 2a9dA 372 1.46e+01 1ng2A 193 1.58e+01 b.34.2.1,b.34.2.1 85660,85661 2booA 247 1.74e+01 1y0zA 330 1.75e+01 1nijA 318 1.76e+01 c.37.1.10,d.237.1.1 85741,85742 1uirA 314 1.79e+01 c.66.1.17 99429 1vhh 162 1.79e+01 1vhh d.65.1.2 39550 1wwrA 171 1.81e+01 1dfmA 223 1.84e+01 1d2iA c.52.1.5 33295 1bg4 302 1.86e+01 1taxA c.1.8.3 28806 1nuyA 337 2.01e+01 e.7.1.1 86213 1zs9A 261 2.03e+01 1o58A 303 2.04e+01 c.79.1.1 92491 1jd5A 124 2.04e+01 g.52.1.1 66544 1uq5A 263 2.15e+01 d.165.1.1 99778 1ksiA 642 2.30e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1mdoA 393 2.36e+01 c.67.1.4 79013 1grj 158 2.64e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2gjlA 328 2.75e+01 1sq9A 397 2.97e+01 b.69.4.1 105889 1ispA 181 3.02e+01 c.69.1.18 76778 1kuuA 202 3.04e+01 d.153.2.1 73019 1n67A 359 3.14e+01 b.2.3.4,b.2.3.4 85354,85355 1ryp2 233 3.23e+01 1ryp2 1sgjA 284 3.26e+01 c.1.12.5 105535 2ccwA 129 3.26e+01 1v3wA 173 3.32e+01 b.81.1.5 100291 1o69A 394 3.53e+01 c.67.1.4 92560 1lnwA 147 3.66e+01 a.4.5.28 78104 1wucA 250 3.70e+01 1cqyA 99 3.75e+01 1b9zA b.3.1.1 22527 1z7lA 276 3.85e+01 1v58A 241 4.03e+01 c.47.1.9,d.17.3.1 108371,108372 1n2sA 299 4.18e+01 c.2.1.2 79857 2bwnA 401 4.22e+01 1qh8A 478 4.24e+01 1qguA c.92.2.3 35633 1j0hA 588 4.29e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1byfA 125 4.49e+01 1byfA d.169.1.1 42419 1behA 187 4.57e+01 1a44 b.17.1.1 23700 1jeyA 609 4.65e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1y2tA 142 4.86e+01 1v3vA 333 4.87e+01 b.35.1.2,c.2.1.1 108345,108346 1zjjA 263 4.93e+01 1l9kA 305 4.95e+01 c.66.1.25 84569 1qreA 247 5.01e+01 1qreA b.81.1.5 28066 1utiA 58 5.29e+01 b.34.2.1 99962 1zbsA 291 5.34e+01 1aohA 147 5.39e+01 1aohA b.2.2.2 22401 1tzzA 392 5.41e+01 1yf2A 425 5.64e+01 1gcqA 61 5.70e+01 1ckaA b.34.2.1 60434 1rypJ 204 5.86e+01 d.153.1.4 41878 1d2fA 390 5.93e+01 1d2fA c.67.1.3 34411 1yzvA 204 5.98e+01 1vr0A 247 6.07e+01 1j0tA 78 6.09e+01 a.163.1.1 77051 1iirA 415 6.19e+01 1iirA c.87.1.5 62453 1gjwA 637 6.28e+01 b.71.1.1,c.1.8.1 60582,60583 1vj1A 363 6.32e+01 b.35.1.2,c.2.1.1 100794,100795 1oxjA 173 6.44e+01 a.60.1.2,a.118.1.13 87517,87518 2hgsA 474 6.46e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1dywA 173 6.47e+01 2cpl b.62.1.1 27505 1xmeA 568 6.51e+01 1i1wA 303 6.58e+01 c.1.8.3 76732 1a3aA 148 6.79e+01 1a3aA d.112.1.1 40917 1zupA 315 6.86e+01 1v25A 541 7.04e+01 e.23.1.1 108275 1vemA 516 7.07e+01 1fyeA 229 7.07e+01 1fyeA c.23.16.4 31477 1cz4A 185 7.13e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1ahsA 126 7.18e+01 1ahsA b.19.1.1 23794 1o54A 277 7.27e+01 c.66.1.13 92482 1augA 215 7.34e+01 1a2zA c.56.4.1 33798 1b4pA 217 7.37e+01 a.45.1.1,c.47.1.5 83158,83159 2chhA 114 7.37e+01 1h4rA 314 7.66e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1nulA 152 7.75e+01 1nulA c.61.1.1 34011 2fa1A 160 7.80e+01 2if1 126 7.86e+01 2if1 d.64.1.1 39547 1m4lA 307 7.93e+01 c.56.5.1 78604 1lqtA 456 7.96e+01 c.3.1.1,c.4.1.1 74198,74199 1btkA 169 7.98e+01 1btkA b.55.1.1 26959 1vdwA 254 7.99e+01 e.7.1.1 100569 1pqhA 143 8.09e+01 b.52.2.1 95017 1kzfA 230 8.10e+01 d.108.1.3 73354 2cxcA 144 8.19e+01 1qq9A 284 8.20e+01 1xjo c.56.5.4 33841 1zsyA 357 8.26e+01 1q1rA 431 8.33e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1e6yA 569 8.43e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1uedA 406 8.66e+01 a.104.1.1 99256 1ihjA 98 8.78e+01 1pdr b.36.1.1 62382 1uk8A 282 8.79e+01 c.69.1.10 107907 1vkfA 188 8.79e+01 c.1.29.1 108656 1rm6C 161 8.88e+01 1dbiA 280 8.95e+01 1gci c.41.1.1 32543