# TARGET T0306 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0306.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 17.5393 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.082 0.004 0.003 0.007 0.127 0.777 2 K 0.505 0.008 0.004 0.012 0.088 0.382 3 L 0.799 0.005 0.008 0.023 0.050 0.115 4 A 0.918 0.004 0.007 0.018 0.017 0.036 5 V 0.929 0.002 0.003 0.012 0.022 0.032 6 V 0.855 0.004 0.002 0.008 0.058 0.072 7 T 0.576 0.007 0.005 0.009 0.219 0.185 8 G 0.298 0.005 0.010 0.011 0.394 0.282 9 Q 0.546 0.006 0.009 0.008 0.275 0.155 10 I 0.940 0.006 0.002 0.003 0.023 0.027 11 V 0.968 0.004 0.001 0.005 0.009 0.013 12 C 0.904 0.004 0.004 0.019 0.026 0.043 13 T 0.670 0.006 0.013 0.053 0.095 0.163 14 V 0.546 0.008 0.019 0.021 0.145 0.262 15 R 0.352 0.038 0.021 0.035 0.166 0.388 16 H 0.182 0.037 0.056 0.044 0.533 0.148 17 H 0.040 0.009 0.120 0.061 0.677 0.093 18 G 0.014 0.005 0.133 0.057 0.704 0.087 19 L 0.033 0.025 0.075 0.023 0.783 0.061 20 A 0.053 0.019 0.058 0.029 0.579 0.261 21 H 0.043 0.013 0.108 0.021 0.649 0.166 22 D 0.090 0.006 0.083 0.008 0.605 0.208 23 K 0.489 0.011 0.041 0.006 0.243 0.210 24 L 0.890 0.006 0.004 0.001 0.038 0.061 25 L 0.962 0.002 0.001 0.001 0.010 0.024 26 M 0.981 0.001 0.001 0.001 0.004 0.013 27 V 0.964 0.001 0.001 0.001 0.007 0.026 28 E 0.918 0.002 0.001 0.001 0.018 0.061 29 M 0.827 0.005 0.001 0.001 0.042 0.124 30 I 0.604 0.044 0.003 0.001 0.086 0.262 31 D 0.176 0.023 0.004 0.001 0.726 0.069 32 P 0.010 0.002 0.035 0.003 0.937 0.013 33 Q 0.004 0.001 0.038 0.003 0.940 0.014 34 G 0.015 0.017 0.026 0.002 0.921 0.019 35 N 0.039 0.042 0.009 0.003 0.671 0.236 36 P 0.089 0.073 0.021 0.006 0.550 0.260 37 D 0.071 0.017 0.029 0.006 0.658 0.219 38 G 0.177 0.013 0.013 0.004 0.522 0.272 39 Q 0.409 0.008 0.004 0.004 0.200 0.376 40 C 0.802 0.006 0.002 0.003 0.050 0.138 41 A 0.969 0.002 0.001 0.002 0.008 0.018 42 V 0.988 0.001 0.001 0.002 0.002 0.007 43 A 0.986 0.001 0.001 0.002 0.003 0.007 44 I 0.963 0.001 0.001 0.003 0.009 0.024 45 D 0.786 0.006 0.002 0.004 0.091 0.111 46 N 0.330 0.020 0.007 0.005 0.394 0.245 47 I 0.130 0.018 0.013 0.007 0.562 0.269 48 G 0.077 0.014 0.011 0.003 0.589 0.307 49 A 0.064 0.062 0.011 0.003 0.401 0.459 50 G 0.036 0.034 0.012 0.002 0.880 0.036 51 T 0.021 0.009 0.005 0.002 0.934 0.030 52 G 0.008 0.002 0.003 0.001 0.939 0.046 53 E 0.414 0.020 0.002 0.001 0.495 0.069 54 W 0.927 0.009 0.001 0.001 0.017 0.046 55 V 0.992 0.001 0.001 0.001 0.002 0.003 56 L 0.996 0.001 0.001 0.001 0.001 0.002 57 L 0.981 0.001 0.001 0.003 0.005 0.010 58 V 0.777 0.002 0.001 0.010 0.068 0.142 59 S 0.145 0.004 0.004 0.021 0.275 0.551 60 G 0.023 0.007 0.021 0.121 0.417 0.411 61 S 0.013 0.010 0.054 0.524 0.249 0.150 62 S 0.006 0.003 0.102 0.785 0.083 0.021 63 A 0.008 0.003 0.105 0.788 0.074 0.022 64 R 0.012 0.003 0.118 0.753 0.081 0.032 65 Q 0.016 0.005 0.109 0.699 0.112 0.059 66 A 0.014 0.008 0.066 0.595 0.173 0.144 67 H 0.008 0.009 0.049 0.470 0.207 0.257 68 K 0.005 0.007 0.024 0.226 0.305 0.433 69 S 0.004 0.004 0.019 0.086 0.408 0.479 70 E 0.005 0.008 0.018 0.055 0.407 0.507 71 T 0.017 0.022 0.016 0.039 0.342 0.564 72 S 0.037 0.012 0.011 0.028 0.261 0.651 73 P 0.094 0.020 0.033 0.036 0.228 0.589 74 V 0.292 0.026 0.024 0.009 0.202 0.448 75 D 0.442 0.011 0.025 0.008 0.196 0.319 76 L 0.849 0.005 0.005 0.003 0.045 0.093 77 C 0.968 0.002 0.001 0.001 0.008 0.019 78 V 0.985 0.001 0.001 0.001 0.004 0.008 79 I 0.972 0.001 0.001 0.003 0.006 0.017 80 G 0.964 0.001 0.001 0.002 0.010 0.022 81 I 0.970 0.001 0.001 0.002 0.010 0.017 82 V 0.913 0.002 0.002 0.009 0.025 0.049 83 D 0.773 0.003 0.002 0.024 0.077 0.121 84 E 0.560 0.005 0.005 0.030 0.112 0.288 85 V 0.591 0.035 0.022 0.031 0.126 0.196 86 V 0.646 0.045 0.015 0.015 0.235 0.044 87 S 0.316 0.010 0.022 0.014 0.604 0.035 88 G 0.062 0.002 0.014 0.006 0.868 0.049 89 G 0.127 0.005 0.009 0.005 0.781 0.074 90 Q 0.579 0.028 0.006 0.008 0.205 0.174 91 V 0.769 0.017 0.006 0.008 0.070 0.131 92 I 0.748 0.015 0.007 0.010 0.069 0.151 93 F 0.613 0.014 0.007 0.013 0.067 0.286 94 H 0.387 0.014 0.005 0.015 0.098 0.481 95 K 0.178 0.006 0.007 0.016 0.134 0.659