# List of top-scoring protein chains for T0306.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xpkA 388 1.16e+00 1xpmA 396 1.17e+00 1tvzA 388 1.39e+00 c.95.1.2,c.95.1.2 107367,107368 1xpkC 388 1.40e+00 1hxmA 229 2.30e+00 1hxmA b.1.1.1,b.1.1.2 61367,61368 1bo4A 168 3.22e+00 1bo4A d.108.1.1 40798 1q5qH 235 5.71e+00 d.153.1.4 95911 1q5rH 294 6.50e+00 d.153.1.4 95925 1j2qH 202 9.82e+00 d.153.1.4 84036 2c3mA 1231 1.16e+01 1zsvA 349 1.57e+01 1u3iA 211 1.72e+01 1rypJ 204 1.72e+01 d.153.1.4 41878 1g0uI 205 1.74e+01 d.153.1.4 41891 1iruJ 205 2.44e+01 d.153.1.4 71361 1u0uA 397 2.73e+01 1zk7A 467 2.76e+01 1xesA 413 2.99e+01 1bruP 241 3.02e+01 5ptp b.47.1.2 26273 1vluA 468 3.13e+01 c.82.1.1 108864 1ehkA 562 3.28e+01 1ehkA f.24.1.1 43624 1xmeA 568 3.29e+01 1p3wA 404 3.44e+01 c.67.1.3 87752 1j5yA 187 3.66e+01 a.4.5.1,d.94.2.1 71592,71593 1o54A 277 3.68e+01 c.66.1.13 92482 1pgl1 185 4.04e+01 2a45G 57 4.10e+01 1bmv1 198 4.14e+01 1bmv1 1jy2N 53 4.38e+01 h.1.8.1 67440 2ae0X 345 4.38e+01 1x68A 76 4.40e+01 2gaeA 346 4.42e+01 1t3qB 788 4.45e+01 d.41.1.1,d.133.1.1 106369,106370 1i7fA 292 4.88e+01 1i7fA d.193.1.1 61888 1ov3A 138 4.92e+01 b.34.2.1,b.34.2.1 87451,87452 1ee0A 402 4.96e+01 1bi5A c.95.1.2,c.95.1.2 36007,36008 1x5fA 120 4.97e+01 1eikA 77 5.02e+01 1eikA d.78.1.1 39751 2exjA 535 5.11e+01 1trf 76 5.13e+01 1ncx a.39.1.5 17247 1ng2A 193 5.56e+01 b.34.2.1,b.34.2.1 85660,85661 1oebA 62 5.81e+01 b.34.2.1 86909 1h3hA 60 5.92e+01 b.34.2.1 83468 1q7hA 153 5.97e+01 b.122.1.1,d.17.6.2 96042,96043 1sqrA 95 5.98e+01 1avsA 90 5.99e+01 1cll a.39.1.5 17226 1utiA 58 6.06e+01 b.34.2.1 99962 1oe8A 211 6.17e+01 a.45.1.1,c.47.1.5 86905,86906 1hmjA 78 6.22e+01 d.78.1.1 39752 2d0nA 59 6.38e+01 1uk8A 282 6.51e+01 c.69.1.10 107907 1luaA 287 6.63e+01 c.2.1.7,c.58.1.4 78216,78217 1xrsA 516 6.96e+01 1o58A 303 7.15e+01 c.79.1.1 92491 1zd0A 150 7.23e+01 1uecA 193 7.34e+01 b.34.2.1,b.34.2.1 88481,88482 1kbvA 327 7.36e+01 b.6.1.3,b.6.1.3 68395,68396 2gokA 429 7.41e+01 1yueA 427 7.42e+01 1wlpB 138 7.45e+01 2afuA 329 7.64e+01 2afwA 329 7.64e+01 2afsA 329 7.65e+01 2gfhA 260 8.13e+01 1u0vA 393 8.17e+01 1rewA 114 8.44e+01 g.17.1.2 97334 1es7A 116 8.50e+01 2tgi g.17.1.2 44786 1nkwH 174 8.59e+01 i.1.1.2 80593 1cqyA 99 8.64e+01 1b9zA b.3.1.1 22527 1vjhA 122 8.72e+01 d.129.3.1 100811 2exkA 535 8.85e+01