# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fh7A 595 4.02e-53 2f71A 298 1.48e-46 1pa1A 310 2.98e-46 c.45.1.2 94404 2b49A 287 9.11e-46 1wchA 315 3.61e-44 2bzlA 325 3.13e-43 2bv5A 282 1.57e-41 1lyvA 306 1.15e-18 c.45.1.2 74348 1g4wR 383 6.06e-18 1g4uS a.24.11.1,c.45.1.2 16644,32692 1oheA 348 9.57e-14 c.45.1.1,c.45.1.1 87013,87014 1rxdA 159 9.73e-11 1fpzA 212 3.45e-08 1fpzA c.45.1.1 59976 1d5rA 324 1.01e-06 1d5rA b.7.1.1,c.45.1.1 23181,32697 1wrmA 165 3.10e-06 1vhrA 184 3.61e-06 1vhrA c.45.1.1 32651 1yn9A 169 1.57e-05 1yz4A 160 2.09e-05 2c46A 241 1.14e-04 1u24A 337 4.18e-03 1ywfA 296 2.41e-02 1zsqA 528 5.56e-02 1k47A 337 1.21e-01 d.14.1.5,d.58.26.4 72040,72041 2d5cA 263 3.19e-01 2g8yA 385 3.65e-01 1xg4A 295 4.73e-01 1h2wA 710 5.42e-01 b.69.7.1,c.69.1.4 76596,76597 1wrrA 301 5.58e-01 1npyA 271 6.36e-01 c.2.1.7,c.58.1.5 85995,85996 1uyrA 737 6.46e-01 c.14.1.4,c.14.1.4 100188,100189 1w6sA 599 6.47e-01 2fl7A 232 7.07e-01 1wkbA 810 7.77e-01 1ihuA 589 8.26e-01 c.37.1.10,c.37.1.10 62394,62395 1ojrA 274 8.49e-01 c.74.1.1 93147 1pg4A 652 9.15e-01 e.23.1.1 88067 1g60A 260 9.19e-01 c.66.1.11 70151 1w2xA 758 9.79e-01 c.14.1.4,c.14.1.4 109134,109135 1qmgA 524 1.47e+00 1qmgA a.100.1.2,c.2.1.6 18785,30182 1zz1A 369 1.72e+00 1dciA 275 2.19e+00 1dciA c.14.1.3 30918 1kt6A 183 2.38e+00 b.60.1.1 84466 1vjhA 122 2.55e+00 d.129.3.1 100811 1w9iA 770 3.17e+00 1zboA 210 3.48e+00 1ig8A 486 3.50e+00 2yhx c.55.1.3,c.55.1.3 64746,64747 1m1zA 513 3.97e+00 c.26.2.1,d.153.1.1 78457,78458 1yt8A 539 4.07e+00 2btoA 473 4.42e+00 1h6dA 433 4.84e+00 c.2.1.3,d.81.1.5 65656,65657 1b6a 478 5.21e+00 1bn5 a.4.5.25,d.127.1.1 16223,41160 2a6hC 1119 5.48e+00 1x6oA 174 5.76e+00 b.34.5.2,b.40.4.5 109493,109494 2b5hA 200 5.86e+00 2b06A 155 6.12e+00 1te0A 318 6.41e+00 1czaN 917 6.41e+00 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1vimA 200 6.90e+00 c.80.1.3 100758 1e5mA 416 6.93e+00 1dd8A c.95.1.1,c.95.1.1 58973,58974 1c7nA 399 6.99e+00 1d2fA c.67.1.3 34413 1qwnA 1045 7.03e+00 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1gmxA 108 7.53e+00 c.46.1.3 65355 1xzwA 426 8.18e+00 1gvhA 396 8.42e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1ako 268 8.52e+00 1ako d.151.1.1 41779 1tc5A 194 8.86e+00 c.110.1.1 106752 1jvbA 347 8.95e+00 b.35.1.2,c.2.1.1 77181,77182 2gcuA 245 9.15e+00 2bklA 695 9.15e+00 1jhdA 396 9.34e+00 b.122.1.3,c.26.1.5 66712,66713 1m7yA 435 9.50e+00 c.67.1.4 78761 1quqB 121 9.60e+00 1quqB b.40.4.3 25305 1k8kD 300 9.81e+00 d.198.2.1,d.198.2.1 68309,68310 1yb5A 351 9.86e+00 1yqyA 523 9.94e+00 1ryiA 382 1.11e+01 2brfA 110 1.12e+01 1zoiA 276 1.15e+01 2f46A 156 1.16e+01 1usyA 275 1.21e+01 1yovA 537 1.22e+01 1o59A 355 1.25e+01 b.18.1.22,b.18.1.22 92495,92496 1rqbA 539 1.26e+01 a.5.7.2,c.1.10.5 105057,105058 1erjA 393 1.28e+01 1erjA b.69.4.1 27660 1em2A 229 1.31e+01 1em2A d.129.3.2 41321 1umkA 275 1.37e+01 1h65A 270 1.40e+01 c.37.1.8 65640 1z15A 344 1.41e+01 1rz2A 254 1.41e+01 b.100.1.1 105130 1kyqA 274 1.44e+01 c.2.1.11,e.37.1.1 73281,73282 1w36B 1180 1.50e+01 1huxA 270 1.52e+01 1huxA c.55.1.5 61278 1uekA 275 1.52e+01 d.14.1.5,d.58.26.5 88483,88484 1u0mA 382 1.52e+01 c.95.1.2,c.95.1.2 107557,107558 1q52A 314 1.53e+01 c.14.1.3 95846 1xgsA 295 1.56e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1zo0A 126 1.56e+01 1r6lA 239 1.59e+01 d.14.1.4,d.101.1.1 97153,97154 1vqvA 306 1.61e+01 1ujpA 271 1.61e+01 c.1.2.4 99462 1vmeA 410 1.64e+01 c.23.5.1,d.157.1.3 108893,108894 1naqA 112 1.66e+01 d.58.5.2 91761 1ec7A 446 1.73e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 7fd1A 106 1.75e+01 1a6l d.58.1.2 38953 1pjr 724 1.77e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1tzjA 338 1.80e+01 1euvA 221 1.81e+01 1euvA d.3.1.7 37133 1f9vA 347 1.81e+01 1bg2 c.37.1.9 59745 1uarA 285 1.86e+01 c.46.1.2,c.46.1.2 107762,107763 1ywmA 200 1.91e+01 1vj1A 363 1.94e+01 b.35.1.2,c.2.1.1 100794,100795 2fsxA 148 1.97e+01 1qx4A 274 1.98e+01 b.43.4.2,c.25.1.1 104624,104625 1zkpA 268 1.99e+01 1p6xA 334 2.06e+01 c.37.1.1 94195 1iznA 286 2.10e+01 e.43.1.1 83847 1gqpA 221 2.18e+01 b.18.1.9 70372 1lfwA 470 2.27e+01 c.56.5.4,d.58.19.1 77942,77943 1a8d 452 2.28e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1vk3A 615 2.29e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1o63A 219 2.45e+01 c.94.1.1 92540 1dmuA 299 2.48e+01 1dmuA c.52.1.4 33294 2a2cA 478 2.48e+01 1a8s 273 2.49e+01 1brt c.69.1.12 34710 1k32A 1045 2.53e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1vqoB 338 2.58e+01 1ri6A 343 2.58e+01 b.69.11.1 97503 1gsa 316 2.63e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1kicA 339 2.66e+01 c.70.1.1 72510 1w78A 422 2.67e+01 1g2nA 264 2.67e+01 1lbd a.123.1.1 60227 1u04A 771 2.68e+01 b.34.14.1,c.55.3.10 107539,107540 1zbfA 142 2.70e+01 1jbwA 428 2.75e+01 c.59.1.2,c.72.2.2 62860,62861 1usgA 346 2.75e+01 c.93.1.1 99864 1xuvA 178 2.77e+01 2cxxA 190 2.83e+01 2b2nA 344 2.84e+01 1n2zA 245 2.89e+01 c.92.2.2 79865 1nm8A 616 3.02e+01 c.43.1.3,c.43.1.3 85872,85873 1cl1A 395 3.04e+01 1cl2A c.67.1.3 34395 2cw6A 298 3.18e+01 1s5jA 847 3.24e+01 1qdeA 224 3.25e+01 1qvaA c.37.1.19 32410 1x0tA 120 3.31e+01 1g3kA 174 3.32e+01 1nedA d.153.1.4 41989 2d29A 387 3.48e+01 1iv8A 720 3.48e+01 b.71.1.1,c.1.8.1 76842,76843 1odoA 408 3.67e+01 a.104.1.1 92783 1wz9A 375 3.70e+01 1e0cA 271 3.74e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1jrrA 382 3.74e+01 e.1.1.1 63256 1udh 244 3.77e+01 3eugA c.18.1.1 31015 1wmhA 89 3.80e+01 1d3yA 301 3.87e+01 1d3yA e.12.1.1 43252 1jltB 122 3.95e+01 a.133.1.2 66868 1wtjA 343 3.99e+01 1pvtA 238 4.01e+01 c.74.1.1 95189 1zelA 298 4.01e+01 2bmoA 447 4.01e+01 1smbA 154 4.04e+01 d.111.1.1 105756 1t3uA 104 4.06e+01 d.244.1.1 99120 1svdA 473 4.07e+01 2bhvA 246 4.12e+01 2g58A 121 4.12e+01 2aioA 269 4.16e+01 1oe8A 211 4.19e+01 a.45.1.1,c.47.1.5 86905,86906 1uufA 369 4.21e+01 b.35.1.2,c.2.1.1 100006,100007 1gqnA 252 4.25e+01 c.1.10.1 90514 1gtmA 419 4.26e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1gwmA 153 4.36e+01 b.18.1.19 83348 2b0tA 738 4.42e+01 2c34A 116 4.44e+01 1f0yA 302 4.47e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1eljA 381 4.49e+01 4mbp c.94.1.1 35791 1ukfA 188 4.58e+01 d.3.1.10 99488 1q45A 391 4.59e+01 c.1.4.1 95780 2bjvA 265 4.60e+01 1jjtA 228 4.78e+01 1a7tA d.157.1.1 63139 1qqfA 277 4.78e+01 1c3d a.102.4.4 18875 1isiA 265 4.83e+01 e.4.1.1 71394 1m4iA 181 4.88e+01 d.108.1.1 74457 1ylhA 560 5.02e+01 1dp4A 435 5.05e+01 1dp4A c.93.1.1 35710 2bl9A 238 5.07e+01 1ollA 188 5.10e+01 b.1.1.4,b.1.1.4 93313,93314 2ex4A 241 5.14e+01 1o4vA 183 5.15e+01 c.23.8.1 86628 1fm0E 150 5.15e+01 1fmaE d.41.5.1 38629 1ufoA 238 5.19e+01 c.69.1.27 99344 1gveA 327 5.19e+01 c.1.7.1 70597 1z94A 147 5.25e+01 2az4A 429 5.26e+01 2aq6A 147 5.27e+01 1kvkA 395 5.48e+01 d.14.1.5,d.58.26.3 73060,73061 1njrA 284 5.50e+01 c.50.1.2 103858 2a4aA 281 5.56e+01 2essA 248 5.59e+01 1mnaA 298 5.64e+01 c.69.1.22 79322 1wqwA 235 5.66e+01 1pe9A 361 5.74e+01 b.80.1.1 94595 2bbsA 290 5.77e+01 1pzlA 237 5.77e+01 a.123.1.1 104393 1n8kA 374 5.83e+01 b.35.1.2,c.2.1.1 80298,80299 1qfjA 232 5.85e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1unnC 115 5.86e+01 d.240.1.1 99680 1m1nB 522 5.86e+01 c.92.2.3 78418 1uf3A 228 5.88e+01 d.159.1.6 99317 1ixh 321 5.89e+01 1ixh c.94.1.1 35761 1v4sA 455 5.90e+01 c.55.1.3,c.55.1.3 100309,100310 1wouA 123 5.93e+01 c.47.1.16 109471 1go4A 205 5.94e+01 d.135.1.1 70292 2cdcA 366 5.97e+01 1fnd 314 5.98e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1j0dA 341 5.98e+01 c.79.1.1 83902 2c4xA 260 6.00e+01 1gd0A 122 6.11e+01 1dptA d.80.1.3 39834 1sazA 381 6.16e+01 1ox0A 430 6.17e+01 c.95.1.1,c.95.1.1 87495,87496 1jkmB 361 6.17e+01 1jkmA c.69.1.2 34634 1mvoA 136 6.19e+01 c.23.1.1 79513 1e6uA 321 6.19e+01 1bsvA c.2.1.2 29805 1rsgA 516 6.21e+01 1ui0A 205 6.28e+01 c.18.1.2 99411 1z06A 189 6.31e+01 2ddrA 306 6.32e+01 1qlwA 328 6.36e+01 1qlwA c.69.1.15 34722 1s3aA 102 6.38e+01 1cqxA 403 6.40e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1pylA 97 6.46e+01 d.1.1.2 104391 2fpnA 216 6.48e+01 2ervA 150 6.50e+01 1qo7A 394 6.52e+01 1qo7A c.69.1.11 34697 1ja1A 622 6.61e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1lc0A 294 6.64e+01 c.2.1.3,d.81.1.4 73823,73824 1vk0A 206 6.73e+01 c.55.3.5 100839 1xtpA 254 6.73e+01 2gl5A 410 6.77e+01 2f5xA 312 6.77e+01 2bikB 313 6.79e+01 1y2qA 143 6.84e+01 1gnxA 479 6.85e+01 c.1.8.4 76241 1r31A 428 6.86e+01 d.58.20.1,d.179.1.1 96897,96898 1oneA 436 6.92e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1x9iA 302 6.94e+01 1b25A 619 6.95e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1mqeA 207 7.08e+01 d.113.1.1 91394 1yhvA 297 7.10e+01 1vqoQ 96 7.10e+01 1pdo 135 7.17e+01 1pdo c.54.1.1 33376 1w79A 489 7.17e+01 2g09A 297 7.18e+01 2c3nA 247 7.18e+01 1yg9A 330 7.19e+01 1iznB 277 7.19e+01 e.43.1.2 83848 1v3vA 333 7.21e+01 b.35.1.2,c.2.1.1 108345,108346 1vg0A 650 7.24e+01 c.3.1.3,d.16.1.6 108596,108597 1chd 203 7.24e+01 1chd c.40.1.1 32478 1ail 73 7.25e+01 1ail a.16.1.1 16381 2bwvA 440 7.30e+01 1n6aA 259 7.31e+01 b.76.2.1,b.85.7.1 80121,80122 2hlcA 230 7.33e+01 5ptp b.47.1.2 26074 1vcaA 202 7.41e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1dysA 348 7.43e+01 1bvwA c.6.1.1 30669 1zczA 464 7.44e+01 1f8eA 388 7.46e+01 2qwc b.68.1.1 59694 1mdl 359 7.49e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 3prn 289 7.50e+01 3prn f.4.3.1 43761 1x3sA 195 7.52e+01 1jf9A 408 7.54e+01 1c0nA c.67.1.3 62931 1jbkA 195 7.56e+01 c.37.1.20 71631 2as0A 396 7.61e+01 1pieA 419 7.64e+01 d.14.1.5,d.58.26.7 94706,94707 2g6yA 217 7.64e+01 1kfcA 268 7.66e+01 c.1.2.4 77371 1vbiA 344 7.67e+01 1r12A 258 7.73e+01 e.4.1.1 96780 1kkhA 317 7.75e+01 d.14.1.5,d.58.26.3 72645,72646 1yeyA 444 7.76e+01 1i12A 160 7.77e+01 1i21A d.108.1.1 61515 1r85A 379 7.86e+01 c.1.8.3 104839 1rzuA 485 7.93e+01 c.87.1.8 105140 1yh3A 256 7.95e+01 1ta3A 274 7.96e+01 c.1.8.5 106731 1t0iA 191 7.97e+01 c.23.5.4 106209 1wxxA 382 8.01e+01 1wycA 392 8.05e+01 1w7jA 795 8.06e+01 1vrmA 325 8.06e+01 1w5tA 412 8.08e+01 1c93A 265 8.20e+01 2ebn c.1.8.5 28998 1z2nX 324 8.25e+01 1p2fA 220 8.30e+01 a.4.6.1,c.23.1.1 87720,87721 1q7eA 428 8.31e+01 c.123.1.1 96035 1xjvA 294 8.34e+01 1te5A 257 8.35e+01 d.153.1.1 106795 1luaA 287 8.36e+01 c.2.1.7,c.58.1.4 78216,78217 1mtzA 293 8.38e+01 c.69.1.7 79467 1tyjA 170 8.39e+01 1z9lA 128 8.46e+01 1wlyA 333 8.47e+01 1o6yA 299 8.47e+01 d.144.1.7 81106 1oqcA 125 8.50e+01 a.24.15.1 87264 1tkkA 366 8.53e+01 c.1.11.2,d.54.1.1 107089,107090 1u53A 196 8.60e+01 1j8mF 297 8.63e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m40A 263 8.64e+01 e.3.1.1 74437 1u0sY 118 8.72e+01 c.23.1.1 107566 1tmy 120 8.86e+01 1dbwA c.23.1.1 31083 1eg2A 319 8.87e+01 1eg2A c.66.1.11 34249 3fapB 94 8.89e+01 1nsgB a.24.7.1 16612 1xttA 216 8.92e+01 2fymA 431 8.97e+01