# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fh7A 595 2.29e-64 2b49A 287 1.14e-55 2f71A 298 1.28e-55 1pa1A 310 2.75e-55 c.45.1.2 94404 1wchA 315 2.56e-53 2bzlA 325 2.07e-52 2bv5A 282 5.32e-52 1lyvA 306 1.54e-24 c.45.1.2 74348 1g4wR 383 2.36e-21 1g4uS a.24.11.1,c.45.1.2 16644,32692 1oheA 348 1.19e-16 c.45.1.1,c.45.1.1 87013,87014 1rxdA 159 2.70e-13 1fpzA 212 8.88e-12 1fpzA c.45.1.1 59976 1d5rA 324 1.85e-09 1d5rA b.7.1.1,c.45.1.1 23181,32697 1vhrA 184 6.59e-09 1vhrA c.45.1.1 32651 2c46A 241 6.58e-08 1yn9A 169 1.49e-07 1wrmA 165 2.33e-07 1yz4A 160 1.70e-06 1zsqA 528 7.48e-05 1ywfA 296 1.12e-04 1u24A 337 6.75e-04 2d5cA 263 2.80e-02 1ihuA 589 3.97e-02 c.37.1.10,c.37.1.10 62394,62395 1wr2A 238 8.65e-02 1g60A 260 1.74e-01 c.66.1.11 70151 1w6sA 599 2.38e-01 1npyA 271 3.54e-01 c.2.1.7,c.58.1.5 85995,85996 1gvhA 396 3.89e-01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1v37A 177 5.09e-01 1p2fA 220 6.52e-01 a.4.6.1,c.23.1.1 87720,87721 1yt8A 539 8.12e-01 2f46A 156 9.53e-01 1h65A 270 1.23e+00 c.37.1.8 65640 1m1zA 513 1.24e+00 c.26.2.1,d.153.1.1 78457,78458 1e0cA 271 1.70e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1jkmB 361 1.76e+00 1jkmA c.69.1.2 34634 2bepA 159 2.61e+00 1tzjA 338 2.82e+00 1gskA 513 2.97e+00 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1j0dA 341 3.20e+00 c.79.1.1 83902 1zpdA 568 3.40e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1zoiA 276 3.51e+00 1xodA 118 3.61e+00 1nnsA 326 3.87e+00 c.88.1.1 85910 1fadA 99 4.06e+00 1fadA a.77.1.2 18428 2f8lA 344 4.23e+00 1ako 268 4.62e+00 1ako d.151.1.1 41779 1zh2A 121 4.77e+00 1k66A 149 4.96e+00 c.23.1.1 90941 1jftA 340 4.98e+00 a.35.1.5,c.93.1.1 66652,66653 1ispA 181 5.20e+00 c.69.1.18 76778 1sffA 426 5.29e+00 c.67.1.4 105482 1dbqA 289 5.34e+00 1qpzA c.93.1.1 35666 1e5mA 416 5.48e+00 1dd8A c.95.1.1,c.95.1.1 58973,58974 1s0aA 429 5.87e+00 c.67.1.4 98263 1xzwA 426 6.18e+00 1f2tA 149 6.35e+00 1f2tA c.37.1.12 32373 1gp6A 356 6.60e+00 b.82.2.1 65441 1qwnA 1045 6.69e+00 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2bm8A 236 7.02e+00 1i1qB 192 7.40e+00 1qdlB c.23.16.1 61544 1zp4A 304 8.05e+00 1auiB 169 8.07e+00 1auiB a.39.1.5 17325 1ox0A 430 8.72e+00 c.95.1.1,c.95.1.1 87495,87496 1gmxA 108 8.84e+00 c.46.1.3 65355 1mn8A 100 8.88e+00 a.61.1.6 79318 1vlpA 441 9.41e+00 d.41.2.2,d.41.2.3 108840,108841 1vjhA 122 9.48e+00 d.129.3.1 100811 1mvoA 136 9.95e+00 c.23.1.1 79513 2cb2A 318 1.01e+01 2ex4A 241 1.08e+01 1r3sA 367 1.09e+01 c.1.22.1 96963 1vmaA 306 1.09e+01 a.24.13.1,c.37.1.10 108887,108888 2btoA 473 1.11e+01 2brfA 110 1.11e+01 2a6hC 1119 1.16e+01 1x6oA 174 1.18e+01 b.34.5.2,b.40.4.5 109493,109494 4ubpB 126 1.19e+01 1ubpB b.85.3.1 28345 1iv8A 720 1.23e+01 b.71.1.1,c.1.8.1 76842,76843 1uf3A 228 1.29e+01 d.159.1.6 99317 1t2bA 397 1.37e+01 1ix9A 205 1.43e+01 a.2.11.1,d.44.1.1 76899,76900 1qo7A 394 1.49e+01 1qo7A c.69.1.11 34697 1bu6O 501 1.49e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 4pgaA 337 1.49e+01 4pgaA c.88.1.1 35565 1kqpA 271 1.51e+01 c.26.2.1 72883 2c78A 405 1.55e+01 1rc9A 221 1.58e+01 1xksA 450 1.58e+01 1q7zA 566 1.67e+01 c.1.21.2,c.1.26.1 96090,96091 1t3gA 159 1.72e+01 1b5qA 472 1.73e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1vi9A 299 1.73e+01 c.72.1.5 100750 2b06A 155 1.76e+01 1gqnA 252 1.82e+01 c.1.10.1 90514 1iscA 192 1.85e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1zsyA 357 1.85e+01 1ps1A 337 1.89e+01 1ps1A a.128.1.4 19450 1vljA 407 1.92e+01 e.22.1.2 108832 1nf3C 128 1.95e+01 b.36.1.1 85596 1jatA 155 1.96e+01 1u9aA d.20.1.1 62818 1ys1X 320 2.01e+01 1fg7A 356 2.02e+01 1gewA c.67.1.1 59819 1ixh 321 2.08e+01 1ixh c.94.1.1 35761 1qf5A 431 2.12e+01 1adeA c.37.1.10 32212 1wddS 128 2.20e+01 1s6cA 183 2.23e+01 a.39.1.5 98594 2aamA 309 2.26e+01 1vj1A 363 2.26e+01 b.35.1.2,c.2.1.1 100794,100795 1t6nA 220 2.28e+01 c.37.1.19 106576 1pjr 724 2.33e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1zbxB 141 2.35e+01 1d7uA 433 2.36e+01 2dkb c.67.1.4 34439 1mnaA 298 2.48e+01 c.69.1.22 79322 1sjwA 144 2.50e+01 d.17.4.9 98899 1evyA 366 2.57e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1vloA 381 2.59e+01 b.44.2.1,d.250.1.1 108838,108839 2gzqA 200 2.61e+01 1puiA 210 2.63e+01 c.37.1.8 88292 1n2eA 300 2.70e+01 c.26.1.4 85268 1czaN 917 2.72e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1vzoA 355 2.78e+01 d.144.1.7 108971 2atpB 115 2.80e+01 2cxxA 190 2.83e+01 1iqvA 218 2.89e+01 1rss a.75.1.1 62661 1xm7A 195 2.93e+01 1pujA 282 2.95e+01 c.37.1.8 88294 1rhs 296 2.97e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1o7jA 327 2.99e+01 c.88.1.1 81140 1rxyA 253 2.99e+01 c.56.2.1 98065 1x7dA 350 3.03e+01 1b25A 619 3.04e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1hyvA 166 3.05e+01 1b9dA c.55.3.2 61424 1gox 370 3.05e+01 1gox c.1.4.1 28607 1zkpA 268 3.06e+01 1ad2 228 3.11e+01 1ad2 e.24.1.1 43353 1yixA 265 3.13e+01 2cw6A 298 3.18e+01 1nvmA 345 3.24e+01 a.5.7.1,c.1.10.5 86249,86250 1qmvA 197 3.25e+01 1qq2A c.47.1.10 33066 1a8s 273 3.26e+01 1brt c.69.1.12 34710 1qy5A 269 3.30e+01 d.122.1.1 96573 1yxyA 234 3.34e+01 1uarA 285 3.43e+01 c.46.1.2,c.46.1.2 107762,107763 1hcd 118 3.45e+01 1hce b.42.5.2 25624 1usgA 346 3.49e+01 c.93.1.1 99864 1r59O 505 3.49e+01 1cojA 212 3.54e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1rqbA 539 3.55e+01 a.5.7.2,c.1.10.5 105057,105058 2awpA 198 3.62e+01 1oi7A 288 3.64e+01 c.2.1.8,c.23.4.1 87049,87050 1z41A 338 3.66e+01 1zbqA 327 3.74e+01 1li5A 461 3.76e+01 a.27.1.1,c.26.1.1 73912,73913 1p4oA 322 3.76e+01 d.144.1.7 87775 1w36B 1180 3.87e+01 1ujpA 271 3.89e+01 c.1.2.4 99462 1jmcA 246 3.94e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1mk4A 157 4.06e+01 d.108.1.1 84979 1dgnA 89 4.15e+01 1dgnA a.77.1.3 18436 2bjvA 265 4.18e+01 1di6A 195 4.19e+01 1di6A c.57.1.1 33863 1f5nA 592 4.20e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1ca1 370 4.26e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2fe7A 166 4.27e+01 1neyA 247 4.31e+01 c.1.1.1 80449 2bjnA 160 4.31e+01 1f9vA 347 4.32e+01 1bg2 c.37.1.9 59745 1geqA 248 4.34e+01 2tysA c.1.2.4 28589 1w96A 554 4.45e+01 1gveA 327 4.49e+01 c.1.7.1 70597 1ys7A 233 4.50e+01 1erjA 393 4.51e+01 1erjA b.69.4.1 27660 1t7lA 766 4.55e+01 1t0iA 191 4.65e+01 c.23.5.4 106209 1e6uA 321 4.67e+01 1bsvA c.2.1.2 29805 1kllA 130 4.75e+01 d.32.1.2 72720 1yhvA 297 4.78e+01 2a4aA 281 4.78e+01 1vefA 395 4.84e+01 1g3mA 294 4.86e+01 c.37.1.5 83268 1oqcA 125 4.86e+01 a.24.15.1 87264 1eu8A 409 4.87e+01 1eu8A c.94.1.1 59502 3htsB 102 4.99e+01 2hts a.4.5.22 16175 8rucI 123 5.02e+01 1rboC d.73.1.1 39629 2f5xA 312 5.11e+01 1u4nA 310 5.13e+01 1l3iA 192 5.37e+01 c.66.1.22 77676 1t9hA 307 5.39e+01 1zxxA 319 5.44e+01 1wc3A 219 5.45e+01 1p7gA 222 5.46e+01 a.2.11.1,d.44.1.1 94223,94224 2ae0X 345 5.48e+01 1isuA 62 5.53e+01 1isuA g.35.1.1 44978 1mkmA 249 5.53e+01 a.4.5.33,d.110.2.2 79242,79243 1uufA 369 5.56e+01 b.35.1.2,c.2.1.1 100006,100007 2as0A 396 5.60e+01 2bgcA 238 5.60e+01 1whbA 157 5.61e+01 2awfA 172 5.63e+01 1qwzA 235 5.64e+01 b.100.1.1 96510 1jbkA 195 5.77e+01 c.37.1.20 71631 1nh1A 330 5.84e+01 e.45.1.1 91871 1g24A 211 5.87e+01 1g24A d.166.1.1 42270 1i7kA 179 5.88e+01 1u9aA d.20.1.1 61889 1j3bA 529 5.90e+01 c.91.1.1,c.109.1.1 77071,77072 2fl7A 232 5.98e+01 1h7sA 365 5.99e+01 d.14.1.3,d.122.1.2 65705,65706 1ujnA 348 6.00e+01 e.22.1.1 99460 1k24A 253 6.05e+01 f.4.4.2 72002 1cvl 319 6.11e+01 1cvl c.69.1.18 34786 1p3dA 475 6.27e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2g6yA 217 6.28e+01 2a9gA 418 6.30e+01 1bx4A 345 6.48e+01 1bx4A c.72.1.1 34935 2ajtA 500 6.54e+01 1go3F 107 6.56e+01 a.60.8.2 65407 1uirA 314 6.57e+01 c.66.1.17 99429 1n2zA 245 6.58e+01 c.92.2.2 79865 1mb3A 124 6.63e+01 c.23.1.1 78907 1q1fA 151 6.64e+01 a.1.1.2 104476 1fvuA 133 6.65e+01 1ixxB d.169.1.1 42345 1yyaA 250 6.66e+01 1j58A 385 6.67e+01 b.82.1.2 71531 1vrbA 342 6.71e+01 2gl5A 410 6.72e+01 1wlzA 105 6.73e+01 1dszB 85 6.74e+01 2nllB g.39.1.2 45108 1rgyA 360 6.76e+01 e.3.1.1 97456 1fp1D 372 6.76e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2g8mA 264 6.91e+01 1kb9D 246 6.99e+01 a.3.1.3,f.23.11.1 77317,77318 1kqfA 1015 7.01e+01 b.52.2.2,c.81.1.1 72871,72872 2bc4A 211 7.04e+01 1vimA 200 7.19e+01 c.80.1.3 100758 2b8wA 328 7.23e+01 1g2qA 187 7.23e+01 c.61.1.1 65117 1l9xA 315 7.27e+01 c.23.16.1 73762 1yb5A 351 7.29e+01 1v05A 96 7.32e+01 1qzzA 374 7.36e+01 a.4.5.29,c.66.1.12 96719,96720 1xtpA 254 7.37e+01 1oz2A 331 7.53e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1kvkA 395 7.53e+01 d.14.1.5,d.58.26.3 73060,73061 1efyA 350 7.54e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1a41 234 7.58e+01 1a41 d.163.1.2 42174 1m1nB 522 7.60e+01 c.92.2.3 78418 1wkt 88 7.61e+01 1wkt b.11.1.2 23630 1elvA 333 7.70e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1lkkA 105 7.81e+01 1lckA d.93.1.1 40412 1rsgA 516 7.87e+01 2aa4A 289 7.90e+01 1kyfA 247 7.92e+01 b.1.10.1,d.105.1.1 73220,73221 1o12A 376 7.93e+01 b.92.1.5,c.1.9.10 80758,80759 1v3vA 333 7.96e+01 b.35.1.2,c.2.1.1 108345,108346 2essA 248 8.08e+01 1qqfA 277 8.10e+01 1c3d a.102.4.4 18875 1kqfB 294 8.14e+01 d.58.1.5,f.23.22.1 75900,75901 1r12A 258 8.20e+01 e.4.1.1 96780 1l8bA 190 8.23e+01 d.86.1.1 73683 1fcyA 236 8.32e+01 2lbd a.123.1.1 19282 2g8oA 264 8.39e+01 1j79A 347 8.40e+01 1j79A c.1.9.4 62675 1cr1A 296 8.47e+01 1cr1A c.37.1.11 32286 1qqqA 264 8.52e+01 1bkpA d.117.1.1 40931 2fsxA 148 8.53e+01 2calA 154 8.54e+01 2ffyA 358 8.66e+01 1o9iA 266 8.70e+01 a.25.1.3 92671 1xfcA 384 8.75e+01 1ei6A 406 8.75e+01 c.76.1.4 90443 1a8d 452 8.79e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1h2eA 207 8.84e+01 c.60.1.1 70857 1xg4A 295 8.96e+01 1dq3A 454 9.00e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586