# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fh7A 595 1.47e-57 2f71A 298 1.30e-49 1pa1A 310 2.45e-49 c.45.1.2 94404 2b49A 287 1.45e-48 1wchA 315 3.75e-47 2bzlA 325 1.23e-45 2bv5A 282 8.12e-44 1lyvA 306 2.53e-20 c.45.1.2 74348 1g4wR 383 1.29e-19 1g4uS a.24.11.1,c.45.1.2 16644,32692 1oheA 348 7.52e-15 c.45.1.1,c.45.1.1 87013,87014 1rxdA 159 6.71e-12 1fpzA 212 1.84e-09 1fpzA c.45.1.1 59976 1d5rA 324 2.09e-07 1d5rA b.7.1.1,c.45.1.1 23181,32697 1vhrA 184 2.45e-06 1vhrA c.45.1.1 32651 1wrmA 165 4.01e-06 1yn9A 169 5.86e-06 1yz4A 160 1.29e-05 2c46A 241 3.70e-05 1u24A 337 1.17e-03 1ywfA 296 8.88e-03 1zsqA 528 1.73e-02 1w6sA 599 2.87e-02 1k47A 337 2.58e-01 d.14.1.5,d.58.26.4 72040,72041 2d5cA 263 3.95e-01 1h2wA 710 4.14e-01 b.69.7.1,c.69.1.4 76596,76597 1xg4A 295 4.95e-01 1npyA 271 5.80e-01 c.2.1.7,c.58.1.5 85995,85996 1wkbA 810 1.04e+00 1wrrA 301 1.09e+00 1g60A 260 1.15e+00 c.66.1.11 70151 1ihuA 589 1.22e+00 c.37.1.10,c.37.1.10 62394,62395 1pg4A 652 1.34e+00 e.23.1.1 88067 1ojrA 274 1.40e+00 c.74.1.1 93147 1usyA 275 1.69e+00 1e5mA 416 2.03e+00 1dd8A c.95.1.1,c.95.1.1 58973,58974 1zoiA 276 2.22e+00 2g8yA 385 2.39e+00 1vjhA 122 3.05e+00 d.129.3.1 100811 2btoA 473 3.39e+00 1erjA 393 3.49e+00 1erjA b.69.4.1 27660 1ako 268 3.61e+00 1ako d.151.1.1 41779 1m1zA 513 3.63e+00 c.26.2.1,d.153.1.1 78457,78458 2gcuA 245 3.66e+00 1x6oA 174 3.90e+00 b.34.5.2,b.40.4.5 109493,109494 1a8s 273 4.08e+00 1brt c.69.1.12 34710 1qmgA 524 4.31e+00 1qmgA a.100.1.2,c.2.1.6 18785,30182 1vimA 200 5.08e+00 c.80.1.3 100758 1jhdA 396 5.32e+00 b.122.1.3,c.26.1.5 66712,66713 1zboA 210 5.41e+00 1zpdA 568 5.44e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1huxA 270 5.61e+00 1huxA c.55.1.5 61278 1kvkA 395 5.75e+00 d.14.1.5,d.58.26.3 73060,73061 1qwnA 1045 5.89e+00 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1zz1A 369 5.89e+00 2a6hC 1119 6.19e+00 1gvhA 396 6.45e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1dciA 275 7.07e+00 1dciA c.14.1.3 30918 1tc5A 194 7.43e+00 c.110.1.1 106752 1vg0A 650 7.48e+00 c.3.1.3,d.16.1.6 108596,108597 1czaN 917 7.62e+00 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1kyqA 274 7.64e+00 c.2.1.11,e.37.1.1 73281,73282 1xzwA 426 7.69e+00 1gmxA 108 7.84e+00 c.46.1.3 65355 2brfA 110 8.16e+00 1h6dA 433 8.17e+00 c.2.1.3,d.81.1.5 65656,65657 1m1nB 522 8.26e+00 c.92.2.3 78418 1yb5A 351 8.55e+00 1vmeA 410 8.55e+00 c.23.5.1,d.157.1.3 108893,108894 2d29A 387 8.70e+00 1yt8A 539 8.79e+00 1geqA 248 9.21e+00 2tysA c.1.2.4 28589 1w9iA 770 9.36e+00 2fl7A 232 9.61e+00 1kt6A 183 9.65e+00 b.60.1.1 84466 1f9vA 347 9.79e+00 1bg2 c.37.1.9 59745 2bklA 695 1.04e+01 1naqA 112 1.07e+01 d.58.5.2 91761 1h65A 270 1.07e+01 c.37.1.8 65640 1vk3A 615 1.09e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1xm7A 195 1.12e+01 1nf3C 128 1.13e+01 b.36.1.1 85596 2f46A 156 1.14e+01 1euvA 221 1.17e+01 1euvA d.3.1.7 37133 1te0A 318 1.19e+01 1t3uA 104 1.20e+01 d.244.1.1 99120 1quqB 121 1.28e+01 1quqB b.40.4.3 25305 2b2nA 344 1.32e+01 1vqvA 306 1.38e+01 1f2tA 149 1.40e+01 1f2tA c.37.1.12 32373 1e6uA 321 1.42e+01 1bsvA c.2.1.2 29805 2b5hA 200 1.46e+01 1uyrA 737 1.50e+01 c.14.1.4,c.14.1.4 100188,100189 1dbqA 289 1.53e+01 1qpzA c.93.1.1 35666 2b06A 155 1.57e+01 1zo0A 126 1.57e+01 1w2xA 758 1.59e+01 c.14.1.4,c.14.1.4 109134,109135 1zkpA 268 1.59e+01 1u04A 771 1.64e+01 b.34.14.1,c.55.3.10 107539,107540 2awfA 172 1.66e+01 1ujpA 271 1.66e+01 c.1.2.4 99462 1jltB 122 1.67e+01 a.133.1.2 66868 1ig8A 486 1.75e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1qqfA 277 1.80e+01 1c3d a.102.4.4 18875 1yqyA 523 1.83e+01 1z06A 189 1.83e+01 1iznA 286 1.83e+01 e.43.1.1 83847 1uekA 275 1.91e+01 d.14.1.5,d.58.26.5 88483,88484 1qlwA 328 1.92e+01 1qlwA c.69.1.15 34722 1mvoA 136 1.93e+01 c.23.1.1 79513 1ufoA 238 1.95e+01 c.69.1.27 99344 1rqbA 539 1.99e+01 a.5.7.2,c.1.10.5 105057,105058 1lfwA 470 2.03e+01 c.56.5.4,d.58.19.1 77942,77943 1dmuA 299 2.22e+01 1dmuA c.52.1.4 33294 1pjr 724 2.24e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 2g58A 121 2.26e+01 1u0mA 382 2.29e+01 c.95.1.2,c.95.1.2 107557,107558 2bjvA 265 2.33e+01 1tzjA 338 2.33e+01 1cg2A 393 2.41e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1o63A 219 2.42e+01 c.94.1.1 92540 1x9pA 523 2.44e+01 1yovA 537 2.44e+01 1r12A 258 2.49e+01 e.4.1.1 96780 1rz2A 254 2.58e+01 b.100.1.1 105130 2bjiA 277 2.59e+01 1em2A 229 2.61e+01 1em2A d.129.3.2 41321 1r1hA 696 2.65e+01 d.92.1.4 104756 1b25A 619 2.75e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1wtjA 343 2.83e+01 1ox0A 430 2.84e+01 c.95.1.1,c.95.1.1 87495,87496 1jkmB 361 2.85e+01 1jkmA c.69.1.2 34634 1svdA 473 2.86e+01 1p2fA 220 2.86e+01 a.4.6.1,c.23.1.1 87720,87721 1gveA 327 2.87e+01 c.1.7.1 70597 1a8d 452 2.87e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 2as0A 396 2.89e+01 1s5jA 847 2.93e+01 1yixA 265 2.95e+01 1gqnA 252 2.97e+01 c.1.10.1 90514 2aa4A 289 3.04e+01 1wdtA 665 3.06e+01 1q45A 391 3.08e+01 c.1.4.1 95780 1wmhA 89 3.09e+01 1jakA 512 3.12e+01 c.1.8.6,d.92.2.1 66472,66473 1sazA 381 3.13e+01 1cqxA 403 3.15e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1gsa 316 3.19e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1mk4A 157 3.23e+01 d.108.1.1 84979 2az4A 429 3.23e+01 1jrrA 382 3.27e+01 e.1.1.1 63256 1qwzA 235 3.27e+01 b.100.1.1 96510 1di6A 195 3.28e+01 1di6A c.57.1.1 33863 2f5xA 312 3.31e+01 1m2kA 249 3.34e+01 c.31.1.5 84754 1iam 185 3.35e+01 1zxq b.1.1.3,b.1.1.4 21653,21689 1mqeA 207 3.38e+01 d.113.1.1 91394 1qdeA 224 3.42e+01 1qvaA c.37.1.19 32410 1vj1A 363 3.43e+01 b.35.1.2,c.2.1.1 100794,100795 1tqyB 415 3.46e+01 c.95.1.1,c.95.1.1 107247,107248 1x9iA 302 3.57e+01 1vqoQ 96 3.62e+01 2aioA 269 3.64e+01 1jvbA 347 3.74e+01 b.35.1.2,c.2.1.1 77181,77182 1m7yA 435 3.79e+01 c.67.1.4 78761 2bmoA 447 3.80e+01 1w79A 489 3.84e+01 1ixh 321 3.90e+01 1ixh c.94.1.1 35761 1qo7A 394 3.96e+01 1qo7A c.69.1.11 34697 2essA 248 4.01e+01 1udh 244 4.07e+01 3eugA c.18.1.1 31015 1m65A 245 4.09e+01 c.6.3.1 84847 1zbfA 142 4.10e+01 2cqsA 842 4.18e+01 1ywmA 200 4.29e+01 1p6xA 334 4.29e+01 c.37.1.1 94195 1p3dA 475 4.35e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1d3yA 301 4.35e+01 1d3yA e.12.1.1 43252 1ryiA 382 4.35e+01 2cyeA 133 4.35e+01 1n2zA 245 4.45e+01 c.92.2.2 79865 1ukfA 188 4.46e+01 d.3.1.10 99488 2ervA 150 4.51e+01 1zh2A 121 4.56e+01 2bwvA 440 4.64e+01 1g3kA 174 4.65e+01 1nedA d.153.1.4 41989 1jf9A 408 4.71e+01 1c0nA c.67.1.3 62931 1vkyA 347 4.72e+01 e.53.1.1 108696 1q52A 314 4.75e+01 c.14.1.3 95846 1e0cA 271 4.84e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1mucA 373 4.86e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1w78A 422 4.86e+01 1c7nA 399 4.86e+01 1d2fA c.67.1.3 34413 1dpjA 329 4.87e+01 1smrA b.50.1.2 26828 1qopB 396 4.89e+01 2tysB c.79.1.1 35270 1rvgA 305 4.90e+01 c.1.10.2 97920 1ec7A 446 4.92e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1hkhA 279 4.99e+01 c.69.1.12 90628 1fm0E 150 5.01e+01 1fmaE d.41.5.1 38629 1oqcA 125 5.11e+01 a.24.15.1 87264 1wjgA 137 5.18e+01 2bhvA 246 5.20e+01 1mtzA 293 5.26e+01 c.69.1.7 79467 1qgoA 264 5.26e+01 1qgoA c.92.1.2 35596 1isiA 265 5.27e+01 e.4.1.1 71394 1gudA 288 5.33e+01 c.93.1.1 83326 2ajrA 331 5.33e+01 2c34A 116 5.41e+01 2bmaA 470 5.43e+01 1fh0A 221 5.44e+01 1cs8A d.3.1.1 59832 1uarA 285 5.47e+01 c.46.1.2,c.46.1.2 107762,107763 1su8A 636 5.49e+01 e.26.1.2 98999 1pvtA 238 5.55e+01 c.74.1.1 95189 1gteA 1025 5.60e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1qqp3 220 5.62e+01 1qqp3 1smbA 154 5.64e+01 d.111.1.1 105756 1o6yA 299 5.74e+01 d.144.1.7 81106 1z94A 147 5.82e+01 1t0iA 191 5.92e+01 c.23.5.4 106209 2a4aA 281 6.03e+01 1h2kA 349 6.07e+01 b.82.2.6 76572 2ex4A 241 6.15e+01 1pl8A 356 6.18e+01 b.35.1.2,c.2.1.1 94878,94879 1jftA 340 6.25e+01 a.35.1.5,c.93.1.1 66652,66653 1xqwA 293 6.31e+01 1f8eA 388 6.34e+01 2qwc b.68.1.1 59694 1w7jA 795 6.35e+01 1nm8A 616 6.40e+01 c.43.1.3,c.43.1.3 85872,85873 1kicA 339 6.44e+01 c.70.1.1 72510 1brt 277 6.49e+01 1brt c.69.1.12 34699 1jbkA 195 6.50e+01 c.37.1.20 71631 1y2mA 716 6.51e+01 1f28A 297 6.52e+01 1bkpA d.117.1.1 59608 1wx1A 335 6.56e+01 1wouA 123 6.62e+01 c.47.1.16 109471 1fnd 314 6.72e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1j0dA 341 6.73e+01 c.79.1.1 83902 1r6lA 239 6.79e+01 d.14.1.4,d.101.1.1 97153,97154 1x0rA 249 6.79e+01 2f69A 261 6.81e+01 1h5rA 293 6.85e+01 c.68.1.6 65623 1nu5A 370 6.87e+01 c.1.11.2,d.54.1.1 92183,92184 1fjgI 128 6.99e+01 1fjfI d.14.1.1 37559 1pyfA 312 7.08e+01 c.1.7.1 95334 1zw8A 64 7.08e+01 2ddrA 306 7.16e+01 1vqoB 338 7.16e+01 1kaeA 434 7.42e+01 c.82.1.2 72247 2plc 274 7.42e+01 2plc c.1.18.2 29614 1j8mF 297 7.44e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m4iA 181 7.45e+01 d.108.1.1 74457 2cxxA 190 7.63e+01 1m2xA 223 7.64e+01 d.157.1.1 84764 1zczA 464 7.70e+01 2g0qA 173 7.77e+01 1iybA 208 7.77e+01 d.124.1.1 90720 1zu4A 320 7.77e+01 1a8q 274 7.78e+01 1brt c.69.1.12 34702 1o1zA 234 7.84e+01 c.1.18.3 86555 1rzuA 485 7.85e+01 c.87.1.8 105140 1r31A 428 7.87e+01 d.58.20.1,d.179.1.1 96897,96898 1fxoA 293 7.92e+01 1g0rA c.68.1.6 34524 1dysA 348 7.94e+01 1bvwA c.6.1.1 30669 2a2cA 478 8.05e+01 1vapA 123 8.05e+01 1poa a.133.1.2 19548 1o5zA 442 8.10e+01 c.59.1.2,c.72.2.2 92530,92531 1xodA 118 8.22e+01 1z8gA 372 8.28e+01 1n8kA 374 8.30e+01 b.35.1.2,c.2.1.1 80298,80299 1lvwA 295 8.33e+01 c.68.1.6 84723 1umwA 237 8.36e+01 d.223.1.2,d.223.1.2 99631,99632 2f6mA 65 8.57e+01 1b6g 310 8.59e+01 1b6g c.69.1.8 34661 1tzzA 392 8.59e+01 1rxyA 253 8.63e+01 c.56.2.1 98065 2cb2A 318 8.72e+01 1eljA 381 8.74e+01 4mbp c.94.1.1 35791 2fmlA 273 8.74e+01 1vkhA 273 8.74e+01 c.69.1.32 108662 1wddS 128 8.76e+01 1yge 839 8.77e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1od3A 168 8.78e+01 b.18.1.10 86825 1ynpA 317 8.80e+01 2ashA 381 8.83e+01 1vrvA 101 8.83e+01 1k32A 1045 8.85e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1clc 639 8.89e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1gtmA 419 8.92e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871