# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fh7A 595 6.45e-67 2f71A 298 1.45e-58 1pa1A 310 3.06e-58 c.45.1.2 94404 2b49A 287 5.20e-57 1wchA 315 6.30e-56 2bzlA 325 8.94e-55 2bv5A 282 1.12e-53 1lyvA 306 4.91e-26 c.45.1.2 74348 1g4wR 383 4.99e-20 1g4uS a.24.11.1,c.45.1.2 16644,32692 1oheA 348 5.45e-13 c.45.1.1,c.45.1.1 87013,87014 1d5rA 324 2.74e-10 1d5rA b.7.1.1,c.45.1.1 23181,32697 1fpzA 212 5.88e-09 1fpzA c.45.1.1 59976 1vhrA 184 1.48e-08 1vhrA c.45.1.1 32651 1rxdA 159 5.50e-08 1wrmA 165 2.25e-07 1yz4A 160 1.18e-06 2c46A 241 6.08e-06 1yn9A 169 7.24e-06 1ywfA 296 5.08e-05 1zsqA 528 6.17e-05 1u24A 337 1.13e-03 1gvhA 396 1.09e-01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2d5cA 263 1.27e-01 1ihuA 589 1.37e-01 c.37.1.10,c.37.1.10 62394,62395 1e0cA 271 2.05e-01 1e0cA c.46.1.2,c.46.1.2 32717,32718 2bepA 159 2.88e-01 1xzwA 426 3.70e-01 1ako 268 3.87e-01 1ako d.151.1.1 41779 2bklA 695 4.10e-01 1vmaA 306 5.73e-01 a.24.13.1,c.37.1.10 108887,108888 1nnsA 326 7.17e-01 c.88.1.1 85910 1uarA 285 9.71e-01 c.46.1.2,c.46.1.2 107762,107763 1jkmB 361 9.99e-01 1jkmA c.69.1.2 34634 1h7sA 365 1.27e+00 d.14.1.3,d.122.1.2 65705,65706 1tz9A 367 1.28e+00 c.1.15.6 107466 1vkhA 273 1.34e+00 c.69.1.32 108662 3tgl 269 1.41e+00 3tgl c.69.1.17 34733 1yt8A 539 1.60e+00 1v37A 177 1.90e+00 1aop 497 2.12e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1k66A 149 2.54e+00 c.23.1.1 90941 1yyaA 250 2.63e+00 1neyA 247 2.68e+00 c.1.1.1 80449 1g60A 260 2.78e+00 c.66.1.11 70151 1z8oA 404 2.85e+00 1vjhA 122 2.97e+00 d.129.3.1 100811 1npyA 271 3.25e+00 c.2.1.7,c.58.1.5 85995,85996 1ox0A 430 3.72e+00 c.95.1.1,c.95.1.1 87495,87496 1vlpA 441 3.78e+00 d.41.2.2,d.41.2.3 108840,108841 1ispA 181 4.03e+00 c.69.1.18 76778 1w7jA 795 4.55e+00 1t7lA 766 4.74e+00 2f46A 156 4.86e+00 1mnaA 298 4.97e+00 c.69.1.22 79322 4pgaA 337 5.42e+00 4pgaA c.88.1.1 35565 1wx1A 335 5.80e+00 1qo7A 394 6.23e+00 1qo7A c.69.1.11 34697 2btoA 473 6.59e+00 1i1qB 192 7.13e+00 1qdlB c.23.16.1 61544 2db3A 434 7.75e+00 1sffA 426 7.93e+00 c.67.1.4 105482 2as0A 396 8.24e+00 1gskA 513 8.45e+00 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1ogiA 303 8.71e+00 b.43.4.2,c.25.1.1 92914,92915 1dbqA 289 8.72e+00 1qpzA c.93.1.1 35666 1u4nA 310 8.76e+00 1m1zA 513 8.78e+00 c.26.2.1,d.153.1.1 78457,78458 1g3mA 294 8.97e+00 c.37.1.5 83268 1ry6A 360 9.28e+00 c.37.1.9 98090 1z06A 189 9.58e+00 1gox 370 9.63e+00 1gox c.1.4.1 28607 1zoiA 276 1.04e+01 1earA 147 1.04e+01 b.107.1.1,d.58.38.1 64875,64876 1ynpA 317 1.06e+01 1geqA 248 1.09e+01 2tysA c.1.2.4 28589 1tzjA 338 1.10e+01 1drw 273 1.13e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1vj1A 363 1.15e+01 b.35.1.2,c.2.1.1 100794,100795 2f8lA 344 1.21e+01 1h4pA 408 1.22e+01 c.1.8.3 90617 1kpf 126 1.24e+01 1kpf d.13.1.1 37507 1wzaA 488 1.25e+01 1cvl 319 1.27e+01 1cvl c.69.1.18 34786 2bm8A 236 1.29e+01 1ir6A 424 1.29e+01 c.107.1.2 71342 1brwA 433 1.29e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1g24A 211 1.36e+01 1g24A d.166.1.1 42270 1czaN 917 1.44e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1zp4A 304 1.49e+01 1z41A 338 1.50e+01 1x0lA 333 1.53e+01 1t2bA 397 1.55e+01 1nf3C 128 1.55e+01 b.36.1.1 85596 1jftA 340 1.57e+01 a.35.1.5,c.93.1.1 66652,66653 1yb5A 351 1.57e+01 1o7jA 327 1.65e+01 c.88.1.1 81140 1jatA 155 1.65e+01 1u9aA d.20.1.1 62818 1thfD 253 1.73e+01 1thfD c.1.2.1 28535 2gl5A 410 1.75e+01 1kb9D 246 1.77e+01 a.3.1.3,f.23.11.1 77317,77318 1c1dA 355 1.87e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1zsyA 357 1.88e+01 2ajtA 500 1.91e+01 1ei6A 406 1.92e+01 c.76.1.4 90443 1exrA 148 1.92e+01 1cll a.39.1.5 17299 2avuE 192 1.95e+01 1zghA 260 1.97e+01 1ve6A 582 2.10e+01 1mswD 883 2.14e+01 e.8.1.3 79427 1ntyA 311 2.16e+01 a.87.1.1,b.55.1.1 103873,103874 1cqxA 403 2.18e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1w3oA 216 2.25e+01 1ecrA 309 2.29e+01 1ecrA e.2.1.1 42678 1zpdA 568 2.30e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1usgA 346 2.40e+01 c.93.1.1 99864 1p2fA 220 2.43e+01 a.4.6.1,c.23.1.1 87720,87721 1gp6A 356 2.44e+01 b.82.2.1 65441 1cp2A 269 2.46e+01 1cp2A c.37.1.10 32269 1h65A 270 2.48e+01 c.37.1.8 65640 1nnvA 110 2.49e+01 d.17.7.1 92012 2ptd 298 2.51e+01 2plc c.1.18.2 29605 1t3qB 788 2.55e+01 d.41.1.1,d.133.1.1 106369,106370 2gzqA 200 2.61e+01 1q92A 197 2.62e+01 c.108.1.8 96250 1udh 244 2.66e+01 3eugA c.18.1.1 31015 1i7kA 179 2.69e+01 1u9aA d.20.1.1 61889 2bbsA 290 2.71e+01 1su8A 636 2.76e+01 e.26.1.2 98999 1gk9A 260 2.81e+01 d.153.1.2 65246 1f0kA 364 2.82e+01 1f0kA c.87.1.2 35465 1x88A 359 2.85e+01 2cw6A 298 2.90e+01 1g5bA 221 2.91e+01 1g5bA d.159.1.3 60261 1y7lA 316 2.92e+01 2aamA 309 2.94e+01 1v2dA 381 3.02e+01 c.67.1.1 108281 1wr2A 238 3.04e+01 1upaA 573 3.07e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2g0dA 409 3.09e+01 1k8kD 300 3.13e+01 d.198.2.1,d.198.2.1 68309,68310 1dgnA 89 3.14e+01 1dgnA a.77.1.3 18436 1ig8A 486 3.27e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2ex4A 241 3.36e+01 1k47A 337 3.38e+01 d.14.1.5,d.58.26.4 72040,72041 1j0dA 341 3.39e+01 c.79.1.1 83902 1auiB 169 3.44e+01 1auiB a.39.1.5 17325 1r3sA 367 3.54e+01 c.1.22.1 96963 1rurL 217 3.56e+01 b.1.1.1,b.1.1.2 97881,97882 1ryiA 382 3.56e+01 1g1cA 99 3.62e+01 b.1.1.4 65078 1a8q 274 3.69e+01 1brt c.69.1.12 34702 1li5A 461 3.78e+01 a.27.1.1,c.26.1.1 73912,73913 1cojA 212 3.87e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1jc9A 269 3.91e+01 d.171.1.1 66490 1t3qC 288 3.94e+01 d.87.2.1,d.145.1.3 106371,106372 1ls1A 295 3.96e+01 a.24.13.1,c.37.1.10 78170,78171 1qfjA 232 4.03e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1cr1A 296 4.12e+01 1cr1A c.37.1.11 32286 1rqbA 539 4.17e+01 a.5.7.2,c.1.10.5 105057,105058 1q9rA 219 4.18e+01 b.1.1.1,b.1.1.2 96305,96306 1nvmA 345 4.22e+01 a.5.7.1,c.1.10.5 86249,86250 1g3qA 237 4.25e+01 1hyqA c.37.1.10 60237 1s0aA 429 4.35e+01 c.67.1.4 98263 2f4iA 197 4.44e+01 1uddA 226 4.48e+01 a.132.1.3 107776 1s7kA 182 4.48e+01 1uf3A 228 4.49e+01 d.159.1.6 99317 1qdeA 224 4.50e+01 1qvaA c.37.1.19 32410 2bbrA 195 4.54e+01 2d4rA 147 4.55e+01 1rhs 296 4.57e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1bw0A 416 4.64e+01 1bw0A c.67.1.1 34385 2fn4A 181 4.65e+01 1xm7A 195 4.65e+01 2fo3A 125 4.67e+01 1qwnA 1045 4.72e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1v5dA 386 4.76e+01 1p6xA 334 4.87e+01 c.37.1.1 94195 1jbwA 428 4.98e+01 c.59.1.2,c.72.2.2 62860,62861 2bo9B 222 5.02e+01 1wddS 128 5.03e+01 2bywA 418 5.10e+01 1gsa 316 5.13e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1u5dA 108 5.16e+01 1e0tA 470 5.17e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1ypvA 313 5.18e+01 1pe9A 361 5.19e+01 b.80.1.1 94595 2g8lA 299 5.21e+01 1wlzA 105 5.24e+01 1vi4A 174 5.27e+01 c.8.7.1 100731 1ou0A 207 5.33e+01 c.23.17.1 93536 2cvdA 198 5.34e+01 1dszB 85 5.40e+01 2nllB g.39.1.2 45108 1efyA 350 5.41e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1aisB 200 5.41e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1gqnA 252 5.46e+01 c.1.10.1 90514 1uirA 314 5.47e+01 c.66.1.17 99429 1gveA 327 5.50e+01 c.1.7.1 70597 1b5qA 472 5.58e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1gxyA 226 5.64e+01 d.166.1.3 76380 1up8A 598 5.77e+01 a.111.1.2 99710 1eeqA 114 5.80e+01 32c2A b.1.1.1 20544 1sjdA 368 5.84e+01 c.1.11.2,d.54.1.1 105632,105633 2a6hC 1119 5.87e+01 1im3D 95 5.88e+01 1im3D b.1.18.5 62568 1yixA 265 5.89e+01 1xfkA 336 5.94e+01 2cb2A 318 5.96e+01 2atpB 115 5.99e+01 2b7kA 200 6.00e+01 1mvoA 136 6.03e+01 c.23.1.1 79513 1ix9A 205 6.04e+01 a.2.11.1,d.44.1.1 76899,76900 1uufA 369 6.04e+01 b.35.1.2,c.2.1.1 100006,100007 1e5mA 416 6.15e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1d7uA 433 6.23e+01 2dkb c.67.1.4 34439 1ku0A 388 6.30e+01 c.69.1.18 72994 1r0mA 375 6.34e+01 c.1.11.2,d.54.1.1 104747,104748 1yge 839 6.46e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1zuoA 186 6.46e+01 1ys1X 320 6.47e+01 1pjhA 280 6.47e+01 c.14.1.3 94761 1din 236 6.48e+01 1din c.69.1.9 34682 2citA 282 6.53e+01 1wduA 245 6.53e+01 d.151.1.1 109286 1s4kA 120 6.60e+01 a.35.1.6 105254 1mkmA 249 6.67e+01 a.4.5.33,d.110.2.2 79242,79243 1uebA 184 6.72e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2fy7A 287 6.76e+01 1mdbA 539 6.78e+01 e.23.1.1 79008 1g8iA 190 7.00e+01 1rec a.39.1.5 60363 1k8kA 418 7.01e+01 c.55.1.1,c.55.1.1 68305,68306 1cbf 285 7.13e+01 1cbf c.90.1.1 35587 2aw4P 114 7.22e+01 1d7oA 297 7.33e+01 1enp c.2.1.2 29907 1cpt 412 7.35e+01 1cpt a.104.1.1 18968 2fp3A 316 7.37e+01 2awpA 198 7.41e+01 1t6nA 220 7.43e+01 c.37.1.19 106576 1dun 134 7.45e+01 1dun b.85.4.1 28371 1isuA 62 7.47e+01 1isuA g.35.1.1 44978 2tpt 440 7.63e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1j58A 385 7.73e+01 b.82.1.2 71531 1iirA 415 7.74e+01 1iirA c.87.1.5 62453 1yloA 348 7.76e+01 2g9iA 249 7.76e+01 1w7lA 422 7.80e+01 c.67.1.1 109226 1q8bA 105 7.82e+01 d.58.4.6 96201 1puiA 210 7.94e+01 c.37.1.8 88292 1xg4A 295 7.94e+01 2eryA 172 7.98e+01 1wcv1 257 8.02e+01 1qj4A 257 8.05e+01 1qj4A c.69.1.20 34796 1edqA 540 8.07e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1kyfA 247 8.25e+01 b.1.10.1,d.105.1.1 73220,73221 1w4rA 195 8.25e+01 1me8A 503 8.25e+01 c.1.5.1 79028 2ag5A 246 8.42e+01 1t2dA 322 8.46e+01 c.2.1.5,d.162.1.1 99084,99085 1qqqA 264 8.48e+01 1bkpA d.117.1.1 40931 1qmgA 524 8.54e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1iy8A 267 8.57e+01 c.2.1.2 83774 1f9vA 347 8.73e+01 1bg2 c.37.1.9 59745 1p5fA 189 8.77e+01 c.23.16.2 94142 1b8oA 284 8.77e+01 1b8oA c.56.2.1 33762 1zh2A 121 8.85e+01 1ig3A 263 8.86e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359