Best Alignments for T0305

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1yfoA/T0305-1yfoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yfoA/T0305-1yfoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2500e-547.13e-180 2shpA c.45.1.2
2fh7A/T0305-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fh7A/T0305-2fh7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8718e-502.34e-175
1larA/T0305-1larA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1larA/T0305-1larA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7685e-491.95e-178 1larA c.45.1.2
c.45.1.2
2b3oA/T0305-2b3oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b3oA/T0305-2b3oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3797e-476.52e-148
1a5y/T0305-1a5y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a5y/T0305-1a5y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9100e-474.23e-160 1pty c.45.1.2
2f71A/T0305-2f71A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f71A/T0305-2f71A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3666e-444.02e-163
2shpA/T0305-2shpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2shpA/T0305-2shpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9259e-441.54e-153 2shpA c.45.1.2
d.93.1.1
d.93.1.1
2b49A/T0305-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b49A/T0305-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9794e-439.55e-163
2bzlA/T0305-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bzlA/T0305-2bzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6077e-423.27e-154
2bv5A/T0305-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bv5A/T0305-2bv5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4571e-411.95e-152

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001