Best Alignments for T0304

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1rybA/T0304-1rybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rybA/T0304-1rybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1156e+011.07e+01 c.56.3.1
1gulA/T0304-1gulA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gulA/T0304-1gulA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3239e+014.64e-06 1pgtA a.45.1.1
c.47.1.5
1womA/T0304-1womA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1womA/T0304-1womA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4239e+014.30e+01
2gaiA/T0304-2gaiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gaiA/T0304-2gaiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2988e+011.42e-03
1z9lA/T0304-1z9lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z9lA/T0304-1z9lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3364e+012.60e-03
1kaeA/T0304-1kaeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kaeA/T0304-1kaeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4198e+012.18e-06 c.82.1.2
1zemA/T0304-1zemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zemA/T0304-1zemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4928e+012.07e+03
1lj2A/T0304-1lj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lj2A/T0304-1lj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6260e+016.88e-01 h.1.13.2
1vpkA/T0304-1vpkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vpkA/T0304-1vpkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9731e+016.47e+00
2f9lA/T0304-2f9lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f9lA/T0304-2f9lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0328e+015.72e-05

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001