# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gulA 222 5.60e-01 1pgtA a.45.1.1,c.47.1.5 17675,32969 1gumA 222 5.61e-01 1pgtA a.45.1.1,c.47.1.5 17683,32977 1rybA 212 3.04e+00 c.56.3.1 98098 1v7cA 351 3.97e+00 c.79.1.1 100446 1k3yA 221 5.47e+00 a.45.1.1,c.47.1.5 77245,77246 1k3lA 221 5.83e+00 a.45.1.1,c.47.1.5 77229,77230 1gseA 221 5.84e+00 1pgtA a.45.1.1,c.47.1.5 17667,32961 1womA 271 8.69e+00 1qxrA 189 9.37e+00 b.82.1.7 96552 1f3aA 222 9.49e+00 1pgtA a.45.1.1,c.47.1.5 17701,32995 1x82A 190 9.84e+00 1zedA 484 9.90e+00 1vpkA 378 1.01e+01 1ew2A 513 1.04e+01 1b8jA c.76.1.1 59525 1awo 62 1.10e+01 1bbzA b.34.2.1 24482 1bbzE 58 1.12e+01 1bbzA b.34.2.1 24479 1bbzA 58 1.14e+01 1bbzA b.34.2.1 24477 1on0A 158 1.24e+01 d.108.1.1 87095 1ca1 370 1.33e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1vcdA 126 1.36e+01 2aorA 223 1.39e+01 2gaiA 633 1.49e+01 1ufhA 180 1.55e+01 d.108.1.1 88485 1aboA 62 1.56e+01 1bbzA b.34.2.1 24474 1fqvA 336 1.60e+01 1fqvA a.158.1.1,c.10.1.3 19254,30856 1i1qA 520 1.63e+01 1qdlA d.161.1.1 61543 1khoA 370 1.74e+01 a.124.1.1,b.12.1.3 72489,72490 1iv8A 720 1.74e+01 b.71.1.1,c.1.8.1 76842,76843 1y8oA 419 1.76e+01 1k1xA 659 1.79e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2eueA 279 1.91e+01 1tu7A 208 1.98e+01 1plfA 72 2.01e+01 1tvxA d.9.1.1 37373 1is8A 230 2.10e+01 d.96.1.1 66321 1t9mA 214 2.16e+01 1sfxA 109 2.17e+01 a.4.5.50 105505 1xw5A 217 2.23e+01 1hnjA 317 2.26e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1k3bA 119 2.34e+01 b.61.5.1 72016 1hn9A 317 2.38e+01 1hn9A c.95.1.2,c.95.1.2 35977,35978 1eblA 317 2.44e+01 1hn9A c.95.1.2,c.95.1.2 35973,35974 1x3cA 73 2.46e+01 1eblB 317 2.50e+01 1hn9A c.95.1.2,c.95.1.2 35975,35976 1e3dB 542 2.55e+01 1h2rL e.18.1.1 59189 2c4jA 218 2.62e+01 1vd3A 217 2.67e+01 1z6oM 191 2.69e+01 1gpmA 525 2.70e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1h2aL 567 2.71e+01 1h2rL e.18.1.1 43299 1k75A 434 2.81e+01 c.82.1.2 68253 1kaeA 434 2.87e+01 c.82.1.2 72247 1u0mA 382 2.89e+01 c.95.1.2,c.95.1.2 107557,107558 1zowA 313 2.92e+01 1cf4B 44 2.94e+01 1cf4B 1cojA 212 3.01e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1x4rA 99 3.15e+01 1t7vA 278 3.16e+01 1k4nA 192 3.19e+01 d.32.1.5 72059 1b5sA 242 3.19e+01 1eaf c.43.1.1 32626 1bx2B 191 3.27e+01 1iakB b.1.1.2,d.19.1.1 21610,38184 2ki5A 366 3.31e+01 1qhiA c.37.1.1 31862 6gsvA 217 3.40e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1avoA 60 3.70e+01 1avoA a.24.8.1 16619 1ao3A 187 3.83e+01 1atzA c.62.1.1 34134 1atzA 189 3.92e+01 1atzA c.62.1.1 34132 1hoe 74 4.10e+01 1hoe b.5.1.1 22833 1ok0A 74 4.10e+01 b.5.1.1 93191 1atzB 189 4.12e+01 1atzA c.62.1.1 34133 1vf1A 229 4.16e+01 1gzqA 300 4.17e+01 b.1.1.2,d.19.1.1 70818,70819 2bkqA 212 4.18e+01 1ezvE 185 4.23e+01 1rie b.33.1.1,f.23.12.1 59548,59549 1yq5A 144 4.26e+01 1odfA 290 4.28e+01 c.37.1.6 92782 1hhsA 664 4.30e+01 1hi0P e.8.1.6 61045 1y74A 57 4.43e+01 1wloA 136 4.69e+01 1b4pA 217 4.69e+01 a.45.1.1,c.47.1.5 83158,83159 1vhmA 195 4.73e+01 d.110.2.1 100691 1xd7A 145 4.75e+01 a.4.5.55 109566 1ymmB 198 4.81e+01 1mzjA 339 4.89e+01 c.95.1.2,c.95.1.2 79700,79701 1n13B 113 4.99e+01 1v32A 101 5.08e+01 a.42.1.1 100277 2fd5A 180 5.16e+01 1kinA 366 5.19e+01 1fe8A 196 5.21e+01 1atzA c.62.1.1 59783 1je6A 275 5.24e+01 b.1.1.2,d.19.1.1 71638,71639 1p6xA 334 5.26e+01 c.37.1.1 94195 1wwpA 119 5.26e+01 1efnB 152 5.26e+01 1efnB d.102.1.1 40699 1hi0P 664 5.27e+01 1hi0P e.8.1.6 61051 2c0cA 362 5.40e+01 1etpA 190 5.47e+01 1etpA a.3.1.4,a.3.1.4 15962,15963 1f5qB 252 5.82e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1ek8A 185 5.83e+01 1ek8A d.67.3.1 59444 1h2rL 534 5.83e+01 1h2rL e.18.1.1 43298 1z9lA 128 5.86e+01 1ubkL 534 5.92e+01 e.18.1.1 88422 1wuiL 534 5.94e+01 1y75A 118 5.95e+01 1uvjA 664 6.11e+01 e.8.1.6 100045 1zj8A 566 6.28e+01 1apq 53 6.36e+01 1apq g.3.11.1 44324 1eal 127 6.39e+01 1hmt b.60.1.2 27227 1yiyA 429 6.41e+01 1vpjA 192 6.42e+01 1b8xA 280 6.57e+01 1b8xA a.45.1.1,c.47.1.5 17739,33033 1pvuA 154 6.62e+01 3pviA c.52.1.6 33306 2ait 74 6.71e+01 1hoe b.5.1.1 22837 1ylxA 103 6.74e+01 1hxkA 1015 6.85e+01 a.8.3.1,b.30.5.6,c.6.2.1 83070,83071,83072 1ozjA 144 6.85e+01 d.164.1.1 93846 1ihfB 94 6.88e+01 1huuA a.55.1.1 17894 1hwwA 1015 6.88e+01 a.8.3.1,b.30.5.6,c.6.2.1 83067,83068,83069 1gcyA 527 7.03e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 1qwnA 1045 7.03e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1lj2A 110 7.09e+01 h.1.13.2 73926 1htyA 1015 7.11e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1m70A 190 7.14e+01 a.3.1.4,a.3.1.4 91200,91201 1df7A 159 7.18e+01 3dfr c.71.1.1 34885 1w0hA 204 7.28e+01 1phk 298 7.35e+01 1cdkA d.144.1.7 41635 1ignA 246 7.54e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1rw2A 152 7.58e+01 a.118.19.1 97961 1rlaA 323 7.59e+01 1d3vA c.42.1.1 32561 1utcA 363 7.59e+01 a.118.1.4,b.69.6.1 99914,99915 1wqgA 185 7.60e+01 1uunA 184 7.69e+01 f.6.1.2 100012 1x3sA 195 7.71e+01 1ty9A 222 7.71e+01 2aebA 322 7.91e+01 1wzvA 155 7.93e+01 1rktA 205 8.00e+01 a.4.1.9,a.121.1.1 97623,97624 1vprA 374 8.04e+01 1lba 146 8.17e+01 1lba d.118.1.1 41062 3ait 74 8.26e+01 1hoe b.5.1.1 22835 1fiwA 290 8.38e+01 5ptp 1go3F 107 8.50e+01 a.60.8.2 65407 1gkxA 388 8.65e+01 a.29.5.1,d.122.1.4 65266,65267 1eemA 241 8.67e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1iybA 208 8.74e+01 d.124.1.1 90720 2occB 227 8.82e+01 2occB b.6.1.2,f.17.2.1 23027,43519 2pviA 157 8.83e+01 3pviA c.52.1.6 33302 1g0u1 266 8.94e+01 1xeeA 91 8.97e+01 1sdoA 203 8.97e+01 c.52.1.21 98809 1eyuA 157 8.99e+01 3pviA c.52.1.6 33304