# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 6.10e-01 2b33A 140 2.10e+00 1sdoA 203 2.44e+00 c.52.1.21 98809 1zowA 313 2.85e+00 1vcdA 126 3.11e+00 1gulA 222 3.31e+00 1pgtA a.45.1.1,c.47.1.5 17675,32969 2ar9A 278 3.43e+00 1awo 62 3.53e+00 1bbzA b.34.2.1 24482 1hnjA 317 3.56e+00 1hn9A c.95.1.2,c.95.1.2 35969,35970 1gumA 222 3.67e+00 1pgtA a.45.1.1,c.47.1.5 17683,32977 1hn9A 317 3.75e+00 1hn9A c.95.1.2,c.95.1.2 35977,35978 1eblB 317 3.95e+00 1hn9A c.95.1.2,c.95.1.2 35975,35976 1eblA 317 4.02e+00 1hn9A c.95.1.2,c.95.1.2 35973,35974 2gaiA 633 4.12e+00 1qxrA 189 4.25e+00 b.82.1.7 96552 1xeeA 91 4.43e+00 1y9aA 360 4.61e+00 1otgA 125 4.68e+00 1otgA d.80.1.2 39831 1y3nA 490 4.87e+00 1kaeA 434 4.90e+00 c.82.1.2 72247 1k75A 434 4.93e+00 c.82.1.2 68253 1fqvA 336 5.80e+00 1fqvA a.158.1.1,c.10.1.3 19254,30856 1x82A 190 6.15e+00 2c0cA 362 6.47e+00 1bbzA 58 7.20e+00 1bbzA b.34.2.1 24477 1bbzE 58 7.22e+00 1bbzA b.34.2.1 24479 1vpkA 378 7.58e+00 1ba1 386 7.70e+00 1ba1 c.55.1.1,c.55.1.1 33387,33388 1rybA 212 8.04e+00 c.56.3.1 98098 1aboA 62 8.12e+00 1bbzA b.34.2.1 24474 1b5sA 242 9.03e+00 1eaf c.43.1.1 32626 1lk5A 229 9.05e+00 c.124.1.4,d.58.40.1 73960,73961 1v7cA 351 9.10e+00 c.79.1.1 100446 1k1xA 659 1.06e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1hzpA 335 1.12e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1t9mA 214 1.19e+01 1gzqA 300 1.20e+01 b.1.1.2,d.19.1.1 70818,70819 1gq2A 555 1.22e+01 c.2.1.7,c.58.1.3 70308,70309 1u6eA 335 1.31e+01 1hpm 386 1.31e+01 1ba1 c.55.1.1,c.55.1.1 33381,33382 1kay 381 1.32e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 2aorA 223 1.33e+01 1i1qA 520 1.37e+01 1qdlA d.161.1.1 61543 1ats 386 1.38e+01 1ba1 c.55.1.1,c.55.1.1 33423,33424 1ee8A 266 1.38e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1f5qB 252 1.45e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 8pchA 220 1.46e+01 1cs8A 1plfA 72 1.48e+01 1tvxA d.9.1.1 37373 1cojA 212 1.50e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1atr 386 1.54e+01 1ba1 c.55.1.1,c.55.1.1 33421,33422 1zccA 248 1.57e+01 1ox6A 555 1.58e+01 c.1.2.1,c.23.16.1 87505,87506 1aroL 151 1.58e+01 1lba d.118.1.1 41063 1mw7A 240 1.62e+01 e.39.1.1 79557 1vhmA 195 1.66e+01 d.110.2.1 100691 1ujrA 110 1.74e+01 1kwhA 492 1.87e+01 c.94.1.1 68876 1bupA 386 1.91e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1lba 146 2.06e+01 1lba d.118.1.1 41062 1cf4B 44 2.08e+01 1cf4B 1jvnA 555 2.15e+01 c.1.2.1,c.23.16.1 67355,67356 2aw5A 541 2.17e+01 1pvuA 154 2.19e+01 3pviA c.52.1.6 33306 1y74A 57 2.19e+01 1ca1 370 2.31e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1e3dB 542 2.34e+01 1h2rL e.18.1.1 59189 1yizA 429 2.40e+01 1st9A 143 2.44e+01 c.47.1.10 98987 1y8oA 419 2.56e+01 1k4nA 192 2.56e+01 d.32.1.5 72059 1avoA 60 2.59e+01 1avoA a.24.8.1 16619 1yyaA 250 2.63e+01 1k3bA 119 2.83e+01 b.61.5.1 72016 1lj2A 110 2.89e+01 h.1.13.2 73926 1khoA 370 2.91e+01 a.124.1.1,b.12.1.3 72489,72490 1ihfB 94 2.94e+01 1huuA a.55.1.1 17894 1rktA 205 2.95e+01 a.4.1.9,a.121.1.1 97623,97624 1zq7A 207 2.98e+01 1gpmA 525 3.01e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1eyuA 157 3.02e+01 3pviA c.52.1.6 33304 1yuwA 554 3.05e+01 2pviA 157 3.06e+01 3pviA c.52.1.6 33302 2f9sA 151 3.06e+01 1yiyA 429 3.09e+01 1apq 53 3.10e+01 1apq g.3.11.1 44324 1yq5A 144 3.11e+01 1wqgA 185 3.21e+01 1ho8A 480 3.24e+01 1ho8A a.118.1.9 61107 1mzjA 339 3.25e+01 c.95.1.2,c.95.1.2 79700,79701 3pviA 157 3.34e+01 3pviA c.52.1.6 33300 2av9A 147 3.38e+01 1acf 125 3.71e+01 3nul d.110.1.1 40882 1iv8A 720 3.72e+01 b.71.1.1,c.1.8.1 76842,76843 1etpA 190 3.76e+01 1etpA a.3.1.4,a.3.1.4 15962,15963 1sfxA 109 3.77e+01 a.4.5.50 105505 1qh4A 380 3.84e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1t7vA 278 3.98e+01 2f9lA 199 3.99e+01 1ev0A 58 4.00e+01 1ev0A d.71.1.1 39594 1rw2A 152 4.01e+01 a.118.19.1 97961 1y4oA 104 4.06e+01 1m70A 190 4.11e+01 a.3.1.4,a.3.1.4 91200,91201 1e1hA 287 4.12e+01 d.92.1.7 83167 5p21 166 4.14e+01 1ctqA c.37.1.8 31966 1n13B 113 4.15e+01 1r77A 103 4.19e+01 1w0hA 204 4.22e+01 1wurA 220 4.27e+01 1wwpA 119 4.28e+01 1z6oM 191 4.30e+01 5reqA 727 4.38e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 2occB 227 4.38e+01 2occB b.6.1.2,f.17.2.1 23027,43519 2mysB 166 4.40e+01 1wdcB a.39.1.5 17308 2hnp 321 4.42e+01 1pty c.45.1.2 32678 1on0A 158 4.52e+01 d.108.1.1 87095 1c6vX 81 4.77e+01 1ihvA b.34.7.1 24641 1eijA 80 4.84e+01 1eijA a.5.6.1 16298 1ufhA 180 4.86e+01 d.108.1.1 88485 1l0oA 150 4.88e+01 d.122.1.3 73403 1owfB 94 4.89e+01 a.55.1.1 87488 1ub4A 110 4.92e+01 b.34.6.2 88399 1reqA 727 4.93e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1n4kA 381 4.97e+01 a.118.22.1,b.42.6.1 79992,79993 1bdmA 327 4.97e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 2bmeA 186 5.00e+01 1qapA 296 5.00e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1usgA 346 5.02e+01 c.93.1.1 99864 1z15A 344 5.05e+01 2fd5A 180 5.08e+01 1doi 128 5.19e+01 1awd d.15.4.1 37676 1v8gA 329 5.25e+01 a.46.2.1,c.27.1.1 100505,100506 1ptvA 321 5.25e+01 1pty c.45.1.2 32665 1fzkA 274 5.32e+01 1agdA b.1.1.2,d.19.1.1 60149,60150 1fiwA 290 5.35e+01 5ptp 1pd21 199 5.36e+01 1pd21 1ysjA 404 5.46e+01 1go4E 100 5.56e+01 h.1.22.1 70296 1x6vA 630 5.65e+01 1f02T 66 5.66e+01 1f02T j.67.1.1 46360 1lk2A 274 5.68e+01 b.1.1.2,d.19.1.1 91056,91057 1rypC 244 5.73e+01 1rypC d.153.1.4 41934 1u69A 163 5.74e+01 d.32.1.7 107699 1rvv1 154 5.75e+01 1rvv1 1rvvA 154 5.75e+01 1rvv1 c.16.1.1 30927 1fzoA 274 5.77e+01 1agdA b.1.1.2,d.19.1.1 60155,60156 1y9lA 115 5.77e+01 1h2aL 567 5.78e+01 1h2rL e.18.1.1 43299 2f71A 298 5.80e+01 1hi0P 664 5.81e+01 1hi0P e.8.1.6 61051 1phk 298 5.81e+01 1cdkA d.144.1.7 41635 1avqA 228 5.82e+01 1avqA c.52.1.13 33326 1bmdA 327 5.90e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 2fua 215 5.92e+01 2fua c.74.1.1 34977 1wr3A 36 5.92e+01 1zi8A 236 5.98e+01 1df7A 159 6.01e+01 3dfr c.71.1.1 34885 1llmC 88 6.04e+01 g.37.1.1,g.37.1.1 91059,91060 1eeoA 321 6.05e+01 1pty c.45.1.2 32655 1y7tA 327 6.11e+01 1ctqA 166 6.15e+01 1ctqA c.37.1.8 31965 1wyuB 474 6.16e+01 1eal 127 6.19e+01 1hmt b.60.1.2 27227 1bdmB 327 6.23e+01 1bmdA c.2.1.5,d.162.1.1 30138,42105 1vrpA 381 6.24e+01 1wgoA 123 6.51e+01 1ksyA 154 6.51e+01 d.89.1.2 72948 1e8nA 710 6.66e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 1x3sA 195 6.80e+01 1pty 321 6.81e+01 1pty c.45.1.2 32656 1txoA 237 6.90e+01 2f62A 161 6.92e+01 1je6A 275 6.94e+01 b.1.1.2,d.19.1.1 71638,71639 1wuiL 534 6.96e+01 1xmbA 418 6.96e+01 1go3E 187 6.97e+01 b.40.4.5,d.230.1.1 83054,83055 1i50B 1224 7.00e+01 e.29.1.1 61755 1oxjA 173 7.00e+01 a.60.1.2,a.118.1.13 87517,87518 1j1nA 492 7.06e+01 c.94.1.1 83978 1vd3A 217 7.08e+01 2al3A 90 7.16e+01 1uvjA 664 7.39e+01 e.8.1.6 100045 1ubkL 534 7.41e+01 e.18.1.1 88422 1agp 166 7.45e+01 1ctqA c.37.1.8 31985 1k2xA 177 7.46e+01 d.153.1.5 90929 1q02A 52 7.55e+01 a.5.2.1 95490 1s6bA 119 7.56e+01 a.133.1.2 98592 1g26A 31 7.65e+01 1g26A g.3.16.1 44381 1gaxA 862 7.65e+01 1gaxA b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1xd7A 145 7.66e+01 a.4.5.55 109566 1vdxA 184 7.71e+01 2f6mA 65 7.75e+01 1h2rL 534 7.82e+01 1h2rL e.18.1.1 43298 1ytbB 180 7.84e+01 1ytbA d.129.1.1,d.129.1.1 41278,41279 1q2zA 120 7.84e+01 a.118.19.1 95656 256bA 106 7.93e+01 256bA a.24.3.1 16539 1atzA 189 8.04e+01 1atzA c.62.1.1 34132 2cz1A 206 8.04e+01 1qh8A 478 8.05e+01 1qguA c.92.2.3 35633 1qguA 478 8.07e+01 1qguA c.92.2.3 35625 821p 166 8.08e+01 1ctqA c.37.1.8 31969 1aax 321 8.09e+01 1pty c.45.1.2 32657 1h1lA 481 8.14e+01 c.92.2.3 70851 7reqA 727 8.17e+01 1reqA c.1.19.1,c.23.6.1 29616,31243 2bw8A 227 8.20e+01 1gkxA 388 8.37e+01 a.29.5.1,d.122.1.4 65266,65267 1jogA 146 8.39e+01 a.24.16.2 77142 1atzB 189 8.56e+01 1atzA c.62.1.1 34133 1a5y 330 8.56e+01 1pty c.45.1.2 32673 1pa1A 310 8.57e+01 c.45.1.2 94404 2ahjA 206 8.59e+01 2ahjA d.149.1.1 41772 1fo0B 112 8.59e+01 1kb5B b.1.1.1 20631 1pb1A 416 8.65e+01 c.77.1.1 88014 1mslA 109 8.68e+01 1mslA f.16.1.1 43660 1jgsA 138 8.69e+01 a.4.5.28 66683 1o0sA 605 8.69e+01 c.2.1.7,c.58.1.3 86540,86541 1apc 106 8.73e+01 256bA a.24.3.1 16543 1uehA 253 8.74e+01 c.101.1.1 99259 1z9lA 128 8.74e+01 1su0B 159 8.76e+01 d.224.1.2 106015 2msbA 115 8.83e+01 1rtm1 d.169.1.1 42355 1kpuA 274 8.86e+01 b.1.1.2,d.19.1.1 84456,84457 2a0kA 161 8.88e+01 2f2tA 161 8.88e+01