Best Alignments for T0304

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1rybA/T0304-1rybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rybA/T0304-1rybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1960e+001.07e+01 c.56.3.1
1womA/T0304-1womA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1womA/T0304-1womA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4027e+004.30e+01
2gaiA/T0304-2gaiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gaiA/T0304-2gaiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4236e+001.42e-03
1lj2A/T0304-1lj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lj2A/T0304-1lj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0225e+016.88e-01 h.1.13.2
1zemA/T0304-1zemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zemA/T0304-1zemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0783e+012.07e+03
1i1qA/T0304-1i1qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i1qA/T0304-1i1qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4482e+014.35e+01 1qdlA d.161.1.1
1u69A/T0304-1u69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u69A/T0304-1u69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5157e+011.92e-01 d.32.1.7
1vpkA/T0304-1vpkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vpkA/T0304-1vpkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7802e+019.20e+00
1z9lA/T0304-1z9lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z9lA/T0304-1z9lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9635e+013.55e-03
1y74A/T0304-1y74A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y74A/T0304-1y74A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9905e+014.06e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001