# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rybA 212 6.70e-01 c.56.3.1 98098 1womA 271 8.17e-01 1lj2A 110 1.92e+00 h.1.13.2 73926 2ae6A 166 2.04e+00 1zemA 262 3.90e+00 1i1qA 520 5.75e+00 1qdlA d.161.1.1 61543 1ituA 369 6.05e+00 c.1.9.7 71423 1b9mA 265 6.52e+00 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1u69A 163 7.28e+00 d.32.1.7 107699 1l3lA 234 8.59e+00 a.4.6.2,d.110.5.1 73541,73542 2f9lA 199 9.13e+00 1wwpA 119 9.40e+00 1m70A 190 9.84e+00 a.3.1.4,a.3.1.4 91200,91201 1vlpA 441 1.13e+01 d.41.2.2,d.41.2.3 108840,108841 2gaiA 633 1.14e+01 1ho8A 480 1.22e+01 1ho8A a.118.1.9 61107 2fuqA 747 1.24e+01 1y9lA 115 1.29e+01 2ashA 381 1.29e+01 2bmeA 186 1.49e+01 1p9bA 442 1.53e+01 c.37.1.10 94385 1df7A 159 1.63e+01 3dfr c.71.1.1 34885 1avqA 228 1.65e+01 1avqA c.52.1.13 33326 1txlA 215 1.71e+01 b.60.1.4 107429 1wvfA 520 1.73e+01 1otjA 283 1.77e+01 b.82.2.5 93517 1mun 225 1.77e+01 1mun a.96.1.2 18744 2f02A 323 1.82e+01 1mjhA 162 1.84e+01 1mjhA c.26.2.4 31639 1xrkA 124 1.90e+01 2aioA 269 2.01e+01 1t56A 216 2.04e+01 a.4.1.9,a.121.1.1 106428,106429 1ep3B 262 2.10e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1fmjA 351 2.11e+01 c.37.1.5 59879 2bcgY 206 2.12e+01 1j8mF 297 2.14e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1fjrA 195 2.20e+01 1fjrA b.102.1.1 59855 1mf7A 194 2.24e+01 c.62.1.1 84937 1tadA 324 2.26e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1lba 146 2.27e+01 1lba d.118.1.1 41062 1y74A 57 2.32e+01 1q2zA 120 2.48e+01 a.118.19.1 95656 1r9dA 787 2.55e+01 c.7.1.1 104865 1knvA 293 2.59e+01 c.52.1.7 68707 1wyuB 474 2.76e+01 1uunA 184 2.77e+01 f.6.1.2 100012 1w0hA 204 2.99e+01 1vpkA 378 3.01e+01 1z84A 351 3.12e+01 1iv8A 720 3.14e+01 b.71.1.1,c.1.8.1 76842,76843 1jogA 146 3.15e+01 a.24.16.2 77142 1n4kA 381 3.16e+01 a.118.22.1,b.42.6.1 79992,79993 2f8mA 244 3.25e+01 1voqa 90 3.30e+01 1nwzA 125 3.34e+01 d.110.3.1 86370 1lvaA 258 3.61e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1v7cA 351 3.65e+01 c.79.1.1 100446 1xd7A 145 3.74e+01 a.4.5.55 109566 2fuvA 549 3.74e+01 1e3dB 542 3.86e+01 1h2rL e.18.1.1 59189 1vf1A 229 3.90e+01 1e85A 127 3.94e+01 1bbhA a.24.3.2 16549 1b7yB 785 4.00e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2gmyA 153 4.04e+01 256bA 106 4.08e+01 256bA a.24.3.1 16539 2blkA 122 4.09e+01 1gsa 316 4.36e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1rktA 205 4.50e+01 a.4.1.9,a.121.1.1 97623,97624 1e4fT 419 4.54e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1wkqA 164 4.60e+01 c.97.1.2 109393 1cf4B 44 4.67e+01 1cf4B 2bi7A 384 4.86e+01 1dugA 234 4.89e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1uh4A 637 4.91e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1nuyA 337 4.91e+01 e.7.1.1 86213 1whuA 104 5.23e+01 1wucA 250 5.33e+01 1a5t 334 5.39e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1tu7A 208 5.49e+01 1nowA 507 5.56e+01 c.1.8.6,d.92.2.1 85936,85937 1qnxA 209 5.57e+01 1qnxA d.111.1.1 40914 2fd5A 180 5.57e+01 1jpaA 312 5.65e+01 d.144.1.7 67011 2c4jA 218 5.65e+01 1ksqA 75 5.71e+01 g.23.1.1 91026 2glzA 153 6.03e+01 1cdzA 96 6.06e+01 1cdzA c.15.1.1 30925 1oktA 211 6.08e+01 a.45.1.1,c.47.1.5 93272,93273 1n4qB 377 6.13e+01 a.102.4.3 91636 1lk5A 229 6.15e+01 c.124.1.4,d.58.40.1 73960,73961 2gfoA 396 6.22e+01 1td6A 306 6.36e+01 1wxxA 382 6.39e+01 1x4rA 99 6.41e+01 1wyuA 438 6.50e+01 1ogiA 303 6.62e+01 b.43.4.2,c.25.1.1 92914,92915 1ji1A 637 6.64e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1bbzA 58 6.71e+01 1bbzA b.34.2.1 24477 2cz1A 206 6.79e+01 1g55A 343 6.96e+01 1g55A c.66.1.26 34247 1px5A 349 7.10e+01 a.160.1.2,d.218.1.6 95277,95278 2b0cA 206 7.16e+01 1q42A 201 7.18e+01 d.17.4.2 95776 2hddA 61 7.23e+01 2hddA a.4.1.1 15971 1ff9A 450 7.25e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1avoA 60 7.30e+01 1avoA a.24.8.1 16619 1jubA 311 7.40e+01 c.1.4.1 90908 2fb1A 226 7.44e+01 1lpbA 95 7.46e+01 1lpbA g.3.10.1,g.3.10.1 44189,44190 1fjlA 81 7.48e+01 2hddA a.4.1.1 16017 2aawA 222 7.56e+01 1yarA 233 7.60e+01 1lshA 1056 7.67e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2btoA 473 7.68e+01 2a33A 215 7.71e+01 1wstA 417 7.78e+01 1b8dA 164 7.78e+01 1cpcA a.1.1.3 15665 1yh3A 256 7.81e+01 1nxuA 333 7.92e+01 c.122.1.1 86389 2cw8A 537 8.01e+01 1wloA 136 8.05e+01 1kvkA 395 8.18e+01 d.14.1.5,d.58.26.3 73060,73061 1mw7A 240 8.21e+01 e.39.1.1 79557 1y13A 181 8.26e+01 2a1hA 365 8.37e+01 1xfsA 178 8.43e+01 d.129.3.5 109589 1lxjA 104 8.57e+01 d.58.48.1 84736 1o08A 221 8.62e+01 c.108.1.6 86525 1pwgA 349 8.71e+01 e.3.1.1 104340 1ga3A 113 8.77e+01 1ga3A a.26.1.2 60411 1vjoA 393 8.77e+01 c.67.1.3 100827 1yf9A 171 8.79e+01 1fgyA 127 8.80e+01 1faoA b.55.1.1 26976