(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0304 NESG:Hunt:1, Escherichia coli, 122 res
                 10         20        30        40        50        60 
                 |          |         |         |         |         | 
   1 ...MSDTLPGTTLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
   2 ...MSDTLPGTTLP.DDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYH
   3 ...MSDTFSGTTHP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
   4 ...MSDTLPGTTHP.DDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYH
   5 ...MSDTLPGTTHP.DDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYH
   6 ...MSDTLPGTTLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
   7 ...MSDKLSGITHP.DDNHDRPWWGLPCTVRPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYH
   8 ...MSDTLPGTTPP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYH
   9 ...MSDTLPGTTLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  10 m..VSDTLPGTTPP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYH
  11 ...MSDTLPGTTLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  12 dfiVSDTLPGTTHP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYH
  13 dfiVSDTLPGTTHP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYH
  14 ...MSDALSGTMLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  15 dfiVSDTLPGTTHP.DDNHDRLWWGLPCTVTPCFGARLVQKGNRLHYLADRAGIRGRFSDADAYH
  16 dfiVSDTLPGTTHP.DDNHDRLWWGLPCTVTPCFGARLVQKGNRLHYLADRAGIRGRFSDADAYH
  17 ...MSDTLPGTTLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  18 ...MSDTLPGTTLP.DDNKDLPWWGLPCAVTPCFGARLVQEGNRLHYLADRAGIRGRFSNADAYH
  19 ...MSDKLSGITHP.DDNHDRPWWGLPCTVRPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYH
  20 dfiVSDTLPGTTLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRTGIRGRFSNADAYH
  21 dfiVSDTLSGTTHP.DDNHDHPWWGLPCTVTPCFGVCLVQEGNRLHYLADRAGIRGLFSDADAYH
  22 ...MSDTLPGTTLP.DDNKDRPWWRLPCTVTPCFGARLVQEGNQLHYLADRAGIRGRFSNADAYH
  23 dfiVSDTLHETNYP.DDNNDRPWWGLPCTVTPCFGARLVQEGNQLHYLADRAGIRGQFSDADAYH
  24 dfiMSDTLPGTTLP.DDNKDLPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  25 dfiVSDTLHETNYP.DDNNDRPWWGLPCTVTPCFGARLVQEGNQLHYLADRAGIRGQFSDADAYH
  26 dfiVSDTLHETNYP.DDNNDRPWWGLPCTVTPCFGARLVQEGNQLHYLADRAGIRGQFSDADAYH
  27 ...MSDKLSGITHP.DDNHDRPWWGLPCTVRPCFGARMVQEGNRLYYLADRAGIRGRFSDADAYH
  28 dfiVSDTLSGTTHP.DDNHDHPWWGLPCTVTPCFGVCLVHQGNRLHYLADRAGIRGLFSDADAYH
  29 ...--------MLP.DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  30 dfiVSDTLPGTTHP.DNNN-RPWWGLPCTVMPCFGARLVQEGNRLHYLADRAGIRGRFSDADSYH
  31 ...MNNHSESGTKP.E-NPACQQWGLKCAITPCFGARLVQEGNRLHFLSDRAGFSGAFAVDVAMR
  32 ...-----------.--------------MTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  33 ...-----------.--------------MTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYP
  34 ...-----------.--------------MTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYP
  35 ...-----------.--------------MTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  36 ...-----------.--------------MTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYH
  37 ...-----------.---MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPK
  38 ...-----------.--------------MTPCFGVCLVQEGNRLHYLADRAGIRGLFSDADAYH
  39 ...MVFFNRNKIMN.KD--STQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQ
  40 ...---------MP.S--ITTPAWGLKRNVTPQLGARLVQEGDQLHFLADRADISGKFSDAQVRD
  41 ...---------MP.S--ITTPAWGLKRNVTPQFGARLVQEGDRLHFLADRADINGTFSEVQVRD
  42 itlLPHFYKETIMP.SS--DTPEWGLKCAITPRFGARLVQEGNRLHYLADRASVVGTFSKTEARH
  43 ...--------MLQ.KDKVMQQEWGLPCTVTPRFTARLVQERHNLHYLADRAAITGKFSSPDLLH
  44 ...-----------.MNKDATQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFNVSFSEMQARD
  45 ...-----------.MNKDSTQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQ
  46 kdnVPDTDNHTTPPhEDDIPSPVWGLQRDITPRLGARLVQQGNHLHFLSDRAGFIGTFSPDTVQA
  47 ...-----------.MEKNDNPEWGLRYDLMPRFTARLVQEGNRLHYLADRAGITGTFNEEECHQ
  48 ...-------MTTL.KLFNIEHAWGLPRKVSPRFGARLILRGLHLDYLHDRASFVGEFPPAIKQQ
  49 ...-----------.---MSNPTRGLQREITLRLGARLVQEGNRLHYLADRASITGKFSDIECRK
  50 ...-------MTTL.KLFDIEHAWGLPRKVSPRFGARLILRGLHLDYLNDRASFVGEFPPAIKQQ
  51 ...-------MTTL.KLFDIEHAWGLPRKVSPRFGARLILRGLHLDYLHDRASFVGEFPPAIKQQ
  52 ...-------MTTL.KLFDIEHAWGLPRKVSPRFGARLILRGLYLDYLHDRASFVGEFPPAIKQQ
  53 ...-------MTTL.KLFDIEHAWGLPRKVSPRFGARLILRGLHLDYLHDRASFVGEFPPAIKQQ
  54 ...---------MD.NHMTTSPTWGLKRDITPRLGARLVQEGTHLHFLSDRANIVGTFSPQAAQA
  55 ...---------MN.NHMTTSPTWGLQCDITPRLGARLVQEGTHLHFLSDRAHIVGTFSLEATQA
  56 ...---------MN.NNITAASAWGLKRDITPRLGARLVQEGTHLHFLADRAGFVGTFAPDILQT
  57 ...---------MN.NHITTSPTWGLQCDITPRLGARLVQEGTHLHFLSDRAHIVGTFSLEATQA
  58 ...-----------.-----------------------MQEGNRLHYLADRAGIRGRFRDADAYP
  59 ...-----------.--MTTSPTWGLKRDITPRLGARLVQEGTHLHFLSDRANIVGTFSLEATQS
  60 ...-----------.-----------------------MQEGNRLHYLADRAGIRGRFSDADAYH
  61 ...-----------.-----------------------MQEGNRLYYLADRAGIRGRFSDADAYH
  62 ...-----------.-----------------------------MHYLADRAGIRGLFSDADAYH
  63 ...MSDTLHETNYP.DDNNDRPWWGLPCTVTPCFGARLVQEGNQLHYLADRAGIRGQFSDADAYH
  64 ...-----------.--------------------------------------------------
  65 ...-----------.--------------------------------------------------


             70        80        90       100       110         120    
             |         |         |         |         |           |    
   1 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPT..PEMKN..
   2 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPT..PETKK..
   3 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCDADTLGSCGYVYLAVYPT..PETKK..
   4 LDQAFPLLMKQLELMLTSGELSPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPT..PETKK..
   5 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKRLTCEADTLGSCGYVYMAVYPT..PETKK..
   6 LDQAFPLLMKQLELMLTSGELSPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PEMKN..
   7 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PETKK..
   8 LDQAFPLLMKQLELMLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PAAPAtt
   9 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPT..PEMKN..
  10 LDQAFPLLMKQLELMLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PAAPAtt
  11 PDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPT..PEMKN..
  12 LDQAFPLLMKQLELMLTSGELNPRHQHTITLYAKGLTCEADTLGSCGYVYLAVYPT..PAAPAit
  13 LGQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGCVYLAVYPT..PETKK..
  14 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPT..PETKK..
  15 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PETKT..
  16 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PETKT..
  17 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPT..PEMKN..
  18 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCDADTLGSCGYVYLAVYPA..TETESnp
  19 LDQAFPLLMKQLELMLTSGELNPRYQHTVTLNAKGLTCEADTLGSCGYVYLAVYPT..PAPATts
  20 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PAAPAit
  21 LDQAFPLLMKQLELMLTSGELSPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PEMKN..
  22 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PAAPAit
  23 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYARGLTCEADTLGSCGYVYMAVYPTlaPATTS..
  24 LDQAFPLLMKQLELMLTSGELSPRYQHTVTLYAKGLTCEADTLGSCDYVYLAVYPT..PEMKN..
  25 LDQAFPLLMKQLELMLTIGELNPRHQHTVTLYARGLTCEADTLGSCGYVYMAVYPTlaPATTS..
  26 LDQAFPLLMKQLELMLTIGELNPRHQHTVTLYARGLTCEADTLGSCGYVYMAVYPTlaPATTS..
  27 LDQAFPLLMKQLELMLTSGELNPRYQQSVTLYAKGLTCEADTLGSCGYVYLAVYPT..PAPATts
  28 LDQAFPLLMKQLELMLTSGELSPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PEMKN..
  29 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPT..PETKK..
  30 LDQAFPLLMKQLELMLTSGELSPRYQHTVTLYAKGLTCEADTFGSCGYVYLAVYPT..PETKT..
  31 LDQAFPLMMKQLELMLTSGELNPRHPHCVTLYHNGLTCEADTLGSCGYVYIAIYPE..QTEPQ..
  32 LDQAFPLLMKQLELMLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PETKK..
  33 LDQAFPLLMKQLKLMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PETKK..
  34 LDQAFPLLMKQLKLMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..SETKK..
  35 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPT..PEMKN..
  36 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPT..PETKK..
  37 LDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPT..QR---..
  38 LDQAFPLLMKQLELMLTSGELSPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PEMKN..
  39 LDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNR..HGFNRhl
  40 LNNAFPQFINHLELMLLSGELNPRYQHCVTLYHKGLTCEADSLGSHGYVYLAIYPT..PQSTA..
  41 LDNAFPQFINYLELMLLSGELNPRHQHCVTLYRNGLTCEADSLGSHGYVYLAIYPT..PQSTA..
  42 LEHVFPELIKQLEHKLRASELNPRQQKCVTLHCNEWTCEADTLGSVGYVYIAIYPS..SAATQ..
  43 IDQAFPVLMKHLELKLADGELSPCQQRTVTLYAKGLTCEADTLGSCGYVYIAIYPT..QR---..
  44 LEEAFPHFVAHMELMLLSGELNPWCAHCVTLYRNGLTCEADTLGSYGYVYIAIYPS..NLVKA..
  45 LDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNR..HGFNRhl
  46 LEVTFSALLTKLEAQLQSGALDPRRQHCVTVQHAGFTCEADTLGSFGHVYIAVYQT..THPTRhk
  47 LNAAFPHFIKQMELMLLSGELNSRDAHRVTLYHNELTCEADTLGSCGYVYIAIYPT..QR---..
  48 FVEAFPAMVKQLERLVATGEIDATEQHCVSIEHAGFTCEADTLGSHGYLYLAIYQT..EAKPKls
  49 LDETFPHFILQMESMLTTGELSPHHAHCVTLYHNDLTCEADTLGSCGYVYIAIYPT..QR---..
  50 FIEAFPAMVKQLERLVATGEIDATEQHCVTIEHVGFTCEADTLGSHGYLYIAIYQT..EAKPLtt
  51 FVEAFPAMVKQLERLVATGEIDTTEQHCVSIEHAGFTCEADTLGSHGYLYIAIYQT..KAKPLtt
  52 FVEAFPAMVKQLERLVATGEIDTTEQHCVSIEHAGFTCEADTLGSHGYLYIAIYQT..ETKPKls
  53 FVEAFPAIVKQLERLVAEGEIDATKQHCVSIEHAGFTCEADTLGSYGYLYIAIYQT..ETKPKls
  54 LDVAFPALITKLESQMLSGALDPRRQQGITVRHGGFVCDADTLGSHGYVYIAVY--..-----..
  55 LDAAFPALITKLESQLLSGALDPRRQQGITVRHGEFVCEADTLGSHGYLYIAVYQK..LA---..
  56 LDTVFPVLIQHLEARLRSGELDQRHQHCVTVQHAGFTCDADTLGSHGYLYIAVYQK..LS---..
  57 LDAAFPALITKLESQLLSGVLDPRRQQGITVRHGEFVCEADTLGSHGYLYIAVYQK..LA---..
  58 LDQAFPLLMKQLKLMLTSGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PETKK..
  59 LDTVFPALITKLESQLLSGQLDPRRQQCLTVRLGGFVCDADTLGSHGYVYIAVYQE..LS---..
  60 LDQAFPLLMKQLELMLTSGELNPRYQHTVTLNAKGLTCEADTLGSCGYVYLAVYPT..PALATts
  61 LDQAFPLLMKQLELMLTSGELNPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPT..PAPATts
  62 LDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPT..PEMKN..
  63 LD------------------------------------------------------..-----..
  64 --------MKQLELMLTSGELNPRHQHTVTLYARGLTCEADTLGSCGYVYMAVYPTlaPATTS..
  65 --------------MLTSGELNPRHQHTVTLYAKGLTCKADTLGSRGYVYMAVYPT..PETKK..


       
      
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