# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1womA 271 9.36e-01 1rybA 212 1.85e+00 c.56.3.1 98098 2gaiA 633 3.16e+00 1vhmA 195 4.70e+00 d.110.2.1 100691 1k3bA 119 5.14e+00 b.61.5.1 72016 1qxrA 189 5.25e+00 b.82.1.7 96552 2b33A 140 5.58e+00 1x82A 190 7.20e+00 1kl7A 514 7.32e+00 c.79.1.1 72678 1k3yA 221 7.33e+00 a.45.1.1,c.47.1.5 77245,77246 1v7cA 351 8.91e+00 c.79.1.1 100446 1t9mA 214 9.86e+00 1e1hA 287 1.05e+01 d.92.1.7 83167 1vpkA 378 1.08e+01 1sdoA 203 1.23e+01 c.52.1.21 98809 1i1qA 520 1.36e+01 1qdlA d.161.1.1 61543 1lj2A 110 1.41e+01 h.1.13.2 73926 1ee8A 266 1.43e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1hnjA 317 1.49e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1f3aA 222 1.49e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1zemA 262 1.58e+01 1xd7A 145 1.72e+01 a.4.5.55 109566 1go3E 187 1.75e+01 b.40.4.5,d.230.1.1 83054,83055 1zowA 313 1.76e+01 1y74A 57 1.80e+01 1u69A 163 2.19e+01 d.32.1.7 107699 1z9lA 128 2.21e+01 1khoA 370 2.25e+01 a.124.1.1,b.12.1.3 72489,72490 1go4E 100 2.32e+01 h.1.22.1 70296 1rw2A 152 2.37e+01 a.118.19.1 97961 1u20A 212 2.44e+01 1phk 298 2.50e+01 1cdkA d.144.1.7 41635 1rypB 250 2.50e+01 1rypB d.153.1.4 41933 2c0cA 362 2.62e+01 1cojA 212 2.67e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1wyuB 474 2.73e+01 2aorA 223 2.76e+01 1wk2A 121 2.97e+01 1st9A 143 3.06e+01 c.47.1.10 98987 1kaeA 434 3.12e+01 c.82.1.2 72247 1ysjA 404 3.14e+01 1rypC 244 3.28e+01 1rypC d.153.1.4 41934 2f9sA 151 3.40e+01 1wwpA 119 3.46e+01 1v5dA 386 3.53e+01 1y75A 118 3.54e+01 1q2zA 120 3.58e+01 a.118.19.1 95656 1wucA 250 3.76e+01 1otgA 125 3.81e+01 1otgA d.80.1.2 39831 1on0A 158 3.81e+01 d.108.1.1 87095 1k4nA 192 3.83e+01 d.32.1.5 72059 1gkzA 388 3.84e+01 a.29.5.1,d.122.1.4 65268,65269 2msbA 115 4.11e+01 1rtm1 d.169.1.1 42355 1fvrA 327 4.14e+01 d.144.1.7 60047 1ok0A 74 4.14e+01 b.5.1.1 93191 1df7A 159 4.28e+01 3dfr c.71.1.1 34885 1acf 125 4.37e+01 3nul d.110.1.1 40882 1hoe 74 4.44e+01 1hoe b.5.1.1 22833 1lwjA 441 4.45e+01 b.71.1.1,c.1.8.1 74303,74304 1lba 146 4.46e+01 1lba d.118.1.1 41062 1cf4B 44 4.46e+01 1cf4B 1r77A 103 4.49e+01 1sluA 142 4.51e+01 1sluA b.16.1.1 23685 1v9sA 208 4.53e+01 1avoA 60 4.60e+01 1avoA a.24.8.1 16619 1ca1 370 4.70e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1z6oM 191 4.71e+01 1yr2A 741 4.77e+01 1vcdA 126 4.88e+01 1ho8A 480 4.89e+01 1ho8A a.118.1.9 61107 1vf1A 229 4.94e+01 1ylkA 172 5.12e+01 1s3sG 127 5.21e+01 d.15.1.2 98457 1sesA 421 5.25e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 2etjA 250 5.38e+01 1opc 110 5.40e+01 1opc a.4.6.1 16231 1bbzA 58 5.88e+01 1bbzA b.34.2.1 24477 1y8oA 419 5.92e+01 1jh6A 189 6.09e+01 d.61.1.1 66707 1x4rA 99 6.31e+01 1wurA 220 6.31e+01 1i50B 1224 6.64e+01 e.29.1.1 61755 1c6vX 81 6.65e+01 1ihvA b.34.7.1 24641 6gsvA 217 6.68e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1uunA 184 6.77e+01 f.6.1.2 100012 1hzpA 335 6.95e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1ryp2 233 6.96e+01 1ryp2 1zi8A 236 7.14e+01 1oktA 211 7.14e+01 a.45.1.1,c.47.1.5 93272,93273 2bmeA 186 7.17e+01 1rgxA 114 7.19e+01 g.77.1.1 104932 2azwA 148 7.44e+01 1onqA 283 7.49e+01 b.1.1.2,d.19.1.1 93365,93366 1akz 223 7.52e+01 3eugA c.18.1.1 31007 1vpjA 192 7.58e+01 1ctqA 166 7.65e+01 1ctqA c.37.1.8 31965 2g3aA 152 7.72e+01 1yoaA 159 7.87e+01 1rktA 205 7.92e+01 a.4.1.9,a.121.1.1 97623,97624 2bw8A 227 8.00e+01 1iv8A 720 8.06e+01 b.71.1.1,c.1.8.1 76842,76843 1sfxA 109 8.11e+01 a.4.5.50 105505 1aisA 182 8.18e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1u6eA 335 8.43e+01 1fsiA 189 8.52e+01 1fsiA d.61.1.1 39536 2c4jA 218 8.56e+01 1mkp 144 8.64e+01 1vhrA c.45.1.1 32654 1fiwA 290 8.65e+01 5ptp 1wgbA 159 8.68e+01 1pd21 199 8.76e+01 1pd21 1h5qA 265 8.78e+01 1cydA c.2.1.2 60643 1zl8A 53 8.87e+01