# List of top-scoring protein chains for T0303.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ah5A 210 1.32e-01 2eyqA 1151 2.44e+00 2avyP 82 3.90e+00 2atrA 138 4.62e+00 1vheA 373 5.46e+00 b.49.3.1,c.56.5.4 100669,100670 1izmA 184 5.62e+00 a.199.1.1 90725 2cwcA 303 8.43e+00 2gk3A 256 1.20e+01 1kbvA 327 1.23e+01 b.6.1.3,b.6.1.3 68395,68396 1v7rA 186 1.23e+01 c.51.4.1 100482 2ashA 381 1.27e+01 2b5wA 357 1.41e+01 2b5vA 357 1.42e+01 2f2eA 146 1.65e+01 1y6dA 120 1.67e+01 1nviD 81 1.86e+01 d.15.3.1 86241 1fm0D 81 1.87e+01 1fmaD d.15.3.1 37642 1jm7B 117 2.08e+01 g.44.1.1 66881 1j3nA 408 2.26e+01 c.95.1.1,c.95.1.1 84074,84075 1o0xA 262 2.33e+01 d.127.1.1 80755 1sly 618 2.56e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1xdwA 331 2.58e+01 1qsaA 618 3.57e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1hyp 80 3.58e+01 1hyp a.52.1.1 17806 2evaA 307 3.71e+01 1p22B 145 3.76e+01 a.157.1.1,d.42.1.1 87717,87718 1zq9A 285 3.94e+01 1miwA 404 3.97e+01 a.173.1.1,d.218.1.4 79162,79163 1j9aA 184 4.11e+01 c.55.3.5 84135 1wfmA 138 4.18e+01 1rypB 250 4.18e+01 1rypB d.153.1.4 41933 1ldkD 133 4.21e+01 a.157.1.1,d.42.1.1 73855,73856 2kinA 238 4.26e+01 1bg2 c.37.1.9 32190 1ek0A 170 4.39e+01 1ctqA c.37.1.8 32076 1fs1B 141 4.45e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 2b3hA 329 4.47e+01 2a6aA 218 4.48e+01 1x9nA 688 4.76e+01 1s67L 119 4.82e+01 d.110.3.2 105303 1s05A 129 4.91e+01 a.24.3.2 98254 1jecA 510 5.03e+01 b.122.1.3,c.26.1.5,c.37.1.15 66595,66596,66597 1j70A 514 5.08e+01 b.122.1.3,c.26.1.5,c.37.1.15 84118,84119,84120 2atpA 122 5.17e+01 1mwvA 714 5.18e+01 a.93.1.3,a.93.1.3 85161,85162 1x7uA 748 5.19e+01 2arjQ 123 5.21e+01 1brrA 247 5.30e+01 1c3wA f.13.1.1 43421 1cwqA 248 5.31e+01 1c3wA f.13.1.1 43412 1nezG 128 5.33e+01 b.1.1.1 85592 1bqhG 129 5.55e+01 1cd8 b.1.1.1 19715 2alyA 266 5.55e+01 1dtjA 76 5.67e+01 1dt4A d.51.1.1 38800 1ao0A 459 5.85e+01 1ecfB c.61.1.1,d.153.1.1 34049,41816 1yiqA 689 5.92e+01 2cufA 95 5.95e+01 1v9yA 167 6.03e+01 d.110.3.2 108454 1huuA 90 6.04e+01 1huuA a.55.1.1 17897 2a2lA 145 6.08e+01 1gph1 465 6.17e+01 1ecfB 1hnr 47 6.20e+01 1hnr a.155.1.1 17896 1b7yA 350 6.37e+01 1pysA d.104.1.1 40776 1ec6A 87 6.38e+01 1dt4A d.51.1.1 38804 1uazA 254 6.41e+01 f.13.1.1 88392 1x5cA 121 6.49e+01 2akhB 400 6.51e+01 1yvkA 163 6.52e+01 1t5yA 190 6.55e+01 b.122.1.1,d.17.6.3 106495,106496 1toqA 133 6.58e+01 2cxcA 144 6.65e+01 1sqwA 188 6.66e+01 1dt4A 73 6.81e+01 1dt4A d.51.1.1 38799 1mgyA 249 6.92e+01 f.13.1.1 84959 1dl7H 112 7.10e+01 1f3rB b.1.1.1 20499 1q5iA 249 7.12e+01 f.13.1.1 95896 1tn5A 249 7.14e+01 1pxrA 249 7.15e+01 f.13.1.1 95297 1p8hA 249 7.16e+01 f.13.1.1 87944 1p8uA 249 7.18e+01 f.13.1.1 87983 1tn0A 249 7.18e+01 1pxsA 249 7.26e+01 f.13.1.1 95299 1ojgA 136 7.26e+01 d.110.6.1 93128 1xjiA 247 7.26e+01 1qhjA 248 7.27e+01 1c3wA f.13.1.1 43409 1zxzA 197 7.28e+01 1q5jA 249 7.30e+01 f.13.1.1 95898 1g8fA 511 7.31e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1a7qH 116 7.31e+01 1gc1H b.1.1.1 19955 2ab1A 122 7.37e+01 1m0kA 262 7.37e+01 f.13.1.1 78344 2gj1A 583 7.43e+01 1othA 321 7.59e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1c8rA 249 7.62e+01 1c3wA f.13.1.1 43407 1fb5A 320 7.64e+01 c.78.1.1,c.78.1.1 90492,90493 1ezwA 349 7.64e+01 1ezwA c.1.16.3 29558 1tfr 305 7.68e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2gjmA 583 7.69e+01 1vgoA 253 7.75e+01 1aj3 110 7.76e+01 1cunA a.7.1.1 16319 2apoA 357 7.89e+01 1myo 118 7.94e+01 2myo d.211.1.1 19174 1ehdA 89 8.08e+01 1hev g.3.1.1,g.3.1.1 44050,44051 1eisA 89 8.10e+01 1hev g.3.1.1,g.3.1.1 44052,44053 1fc0A 846 8.42e+01 1a8i c.87.1.4 35473 1xoiA 846 8.42e+01 1l5sA 847 8.43e+01 c.87.1.4 77716 1o06A 20 8.60e+01 j.105.1.1 86524 1en2A 89 8.66e+01 1hev g.3.1.1,g.3.1.1 44048,44049 1oaoA 674 8.67e+01 e.26.1.2 86744 1uenA 125 8.79e+01 b.1.2.1 99268 1we8A 104 8.86e+01 3adk 195 8.86e+01 1zin c.37.1.1 31885