/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0302.t06.str2 rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0302/ -e s/START_COL/1/ \ -e s/REAL_PDB/2jm5A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174661295 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.83111 sec, elapsed time= 5.86319 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.9041 sec, elapsed time= 5.95311 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0302 numbered 1 through 132 Created new target T0302 from T0302.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2jm5A expands to /projects/compbio/data/pdb/2jm5.pdb.gz 2jm5A: Read 134 residues and 1104 atoms. # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.13376 sec, elapsed time= 8.20667 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 98 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.8409 # GDT_score(maxd=8,maxw=2.9)= -83.2665 # GDT_score(maxd=8,maxw=3.2)= -78.8113 # GDT_score(maxd=8,maxw=3.5)= -74.3864 # GDT_score(maxd=10,maxw=3.8)= -76.8446 # GDT_score(maxd=10,maxw=4)= -74.107 # GDT_score(maxd=10,maxw=4.2)= -71.5011 # GDT_score(maxd=12,maxw=4.3)= -75.2297 # GDT_score(maxd=12,maxw=4.5)= -72.722 # GDT_score(maxd=12,maxw=4.7)= -70.2793 # GDT_score(maxd=14,maxw=5.2)= -68.4386 # GDT_score(maxd=14,maxw=5.5)= -65.223 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.6140000e+03 rmsd (weighted)= 2.5111929e+00 (unweighted)= 2.7031556e+00 superimposing iter= 1 total_weight= 3.5600680e+03 rmsd (weighted)= 1.3526460e+00 (unweighted)= 2.7068147e+00 superimposing iter= 2 total_weight= 1.3864075e+03 rmsd (weighted)= 1.1917074e+00 (unweighted)= 2.7108800e+00 superimposing iter= 3 total_weight= 1.1415396e+03 rmsd (weighted)= 1.1590005e+00 (unweighted)= 2.7143529e+00 superimposing iter= 4 total_weight= 1.1011887e+03 rmsd (weighted)= 1.1478859e+00 (unweighted)= 2.7169835e+00 superimposing iter= 5 total_weight= 1.0899800e+03 rmsd (weighted)= 1.1427311e+00 (unweighted)= 2.7190775e+00 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1298211518.pdb -s /var/tmp/to_scwrl_1298211518.seq -o /var/tmp/from_scwrl_1298211518.pdb > /var/tmp/scwrl_1298211518.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298211518.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.0833 # GDT_score(maxd=8,maxw=2.9)= -82.4554 # GDT_score(maxd=8,maxw=3.2)= -78.3342 # GDT_score(maxd=8,maxw=3.5)= -74.1455 # GDT_score(maxd=10,maxw=3.8)= -76.5361 # GDT_score(maxd=10,maxw=4)= -73.8586 # GDT_score(maxd=10,maxw=4.2)= -71.1904 # GDT_score(maxd=12,maxw=4.3)= -74.9713 # GDT_score(maxd=12,maxw=4.5)= -72.401 # GDT_score(maxd=12,maxw=4.7)= -69.9217 # GDT_score(maxd=14,maxw=5.2)= -68.1014 # GDT_score(maxd=14,maxw=5.5)= -64.8939 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_264910588.pdb -s /var/tmp/to_scwrl_264910588.seq -o /var/tmp/from_scwrl_264910588.pdb > /var/tmp/scwrl_264910588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_264910588.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.977273 # GDT_score = -75.7576 # GDT_score(maxd=8,maxw=2.9)= -80.2689 # GDT_score(maxd=8,maxw=3.2)= -76.4585 # GDT_score(maxd=8,maxw=3.5)= -72.6081 # GDT_score(maxd=10,maxw=3.8)= -74.9934 # GDT_score(maxd=10,maxw=4)= -72.5751 # GDT_score(maxd=10,maxw=4.2)= -70.1927 # GDT_score(maxd=12,maxw=4.3)= -73.6988 # GDT_score(maxd=12,maxw=4.5)= -71.3873 # GDT_score(maxd=12,maxw=4.7)= -69.1269 # GDT_score(maxd=14,maxw=5.2)= -67.4791 # GDT_score(maxd=14,maxw=5.5)= -64.5151 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2065176793.pdb -s /var/tmp/to_scwrl_2065176793.seq -o /var/tmp/from_scwrl_2065176793.pdb > /var/tmp/scwrl_2065176793.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2065176793.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.954545 # GDT_score = -74.4318 # GDT_score(maxd=8,maxw=2.9)= -78.212 # GDT_score(maxd=8,maxw=3.2)= -74.3117 # GDT_score(maxd=8,maxw=3.5)= -70.4032 # GDT_score(maxd=10,maxw=3.8)= -72.7787 # GDT_score(maxd=10,maxw=4)= -70.3979 # GDT_score(maxd=10,maxw=4.2)= -68.1105 # GDT_score(maxd=12,maxw=4.3)= -71.5273 # GDT_score(maxd=12,maxw=4.5)= -69.3217 # GDT_score(maxd=12,maxw=4.7)= -67.1703 # GDT_score(maxd=14,maxw=5.2)= -65.5045 # GDT_score(maxd=14,maxw=5.5)= -62.4869 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1878572541.pdb -s /var/tmp/to_scwrl_1878572541.seq -o /var/tmp/from_scwrl_1878572541.pdb > /var/tmp/scwrl_1878572541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1878572541.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.954545 # GDT_score = -50.947 # GDT_score(maxd=8,maxw=2.9)= -54.8624 # GDT_score(maxd=8,maxw=3.2)= -51.8635 # GDT_score(maxd=8,maxw=3.5)= -48.77 # GDT_score(maxd=10,maxw=3.8)= -50.7364 # GDT_score(maxd=10,maxw=4)= -48.8809 # GDT_score(maxd=10,maxw=4.2)= -47.0857 # GDT_score(maxd=12,maxw=4.3)= -49.9673 # GDT_score(maxd=12,maxw=4.5)= -48.223 # GDT_score(maxd=12,maxw=4.7)= -46.5615 # GDT_score(maxd=14,maxw=5.2)= -45.7239 # GDT_score(maxd=14,maxw=5.5)= -43.6603 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1800299768.pdb -s /var/tmp/to_scwrl_1800299768.seq -o /var/tmp/from_scwrl_1800299768.pdb > /var/tmp/scwrl_1800299768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800299768.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0302.try1-opt2.pdb looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -77.2727 # GDT_score(maxd=8,maxw=2.9)= -82.4515 # GDT_score(maxd=8,maxw=3.2)= -78.3208 # GDT_score(maxd=8,maxw=3.5)= -74.1327 # GDT_score(maxd=10,maxw=3.8)= -76.5244 # GDT_score(maxd=10,maxw=4)= -73.8485 # GDT_score(maxd=10,maxw=4.2)= -71.1812 # GDT_score(maxd=12,maxw=4.3)= -74.9622 # GDT_score(maxd=12,maxw=4.5)= -72.3925 # GDT_score(maxd=12,maxw=4.7)= -69.9134 # GDT_score(maxd=14,maxw=5.2)= -68.098 # GDT_score(maxd=14,maxw=5.5)= -64.8908 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.6140000e+03 rmsd (weighted)= 2.7583114e+00 (unweighted)= 2.9233682e+00 superimposing iter= 1 total_weight= 4.0393721e+03 rmsd (weighted)= 1.3851807e+00 (unweighted)= 2.9282190e+00 superimposing iter= 2 total_weight= 1.4157347e+03 rmsd (weighted)= 1.2075330e+00 (unweighted)= 2.9338297e+00 superimposing iter= 3 total_weight= 1.1379179e+03 rmsd (weighted)= 1.1762271e+00 (unweighted)= 2.9398048e+00 superimposing iter= 4 total_weight= 1.1156799e+03 rmsd (weighted)= 1.1575274e+00 (unweighted)= 2.9465182e+00 superimposing iter= 5 total_weight= 1.1097851e+03 rmsd (weighted)= 1.1421183e+00 (unweighted)= 2.9538677e+00 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0302)K52.C and (T0302)S53.C only 0.0000000e+00 apart, marking (T0302)S53.C as missing WARNING: atoms too close: (T0302)S53.N and (T0302)K54.N only 0.0000000e+00 apart, marking (T0302)S53.N as missing WARNING: atoms too close: (T0302)S53.CA and (T0302)K54.CA only 0.0000000e+00 apart, marking (T0302)S53.CA as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.977273 # GDT_score = -75.5682 # GDT_score(maxd=8,maxw=2.9)= -80.2609 # GDT_score(maxd=8,maxw=3.2)= -76.4462 # GDT_score(maxd=8,maxw=3.5)= -72.5861 # GDT_score(maxd=10,maxw=3.8)= -74.9732 # GDT_score(maxd=10,maxw=4)= -72.558 # GDT_score(maxd=10,maxw=4.2)= -70.1638 # GDT_score(maxd=12,maxw=4.3)= -73.6828 # GDT_score(maxd=12,maxw=4.5)= -71.3603 # GDT_score(maxd=12,maxw=4.7)= -69.0916 # GDT_score(maxd=14,maxw=5.2)= -67.4761 # GDT_score(maxd=14,maxw=5.5)= -64.5148 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.962121 # GDT_score = -75.1894 # GDT_score(maxd=8,maxw=2.9)= -78.9562 # GDT_score(maxd=8,maxw=3.2)= -74.9955 # GDT_score(maxd=8,maxw=3.5)= -71.0413 # GDT_score(maxd=10,maxw=3.8)= -73.4306 # GDT_score(maxd=10,maxw=4)= -71.0174 # GDT_score(maxd=10,maxw=4.2)= -68.7024 # GDT_score(maxd=12,maxw=4.3)= -72.1496 # GDT_score(maxd=12,maxw=4.5)= -69.9179 # GDT_score(maxd=12,maxw=4.7)= -67.7378 # GDT_score(maxd=14,maxw=5.2)= -66.0687 # GDT_score(maxd=14,maxw=5.5)= -63.0204 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0302)K52.C and (T0302)S53.C only 0.0000000e+00 apart, marking (T0302)S53.C as missing WARNING: atoms too close: (T0302)S53.N and (T0302)K54.N only 0.0000000e+00 apart, marking (T0302)S53.N as missing WARNING: atoms too close: (T0302)S53.CA and (T0302)K54.CA only 0.0000000e+00 apart, marking (T0302)S53.CA as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0302)S53.C and (T0302)K54.C only 0.0000000e+00 apart, marking (T0302)K54.C as missing WARNING: atoms too close: (T0302)K54.N and (T0302)G55.N only 0.0000000e+00 apart, marking (T0302)K54.N as missing WARNING: atoms too close: (T0302)K54.CA and (T0302)G55.CA only 0.0000000e+00 apart, marking (T0302)K54.CA as missing WARNING: atoms too close: (T0302)S116.C and (T0302)S123.C only 0.0000000e+00 apart, marking (T0302)S123.C as missing WARNING: atoms too close: (T0302)Y117.N and (T0302)D124.N only 0.0000000e+00 apart, marking (T0302)Y117.N as missing WARNING: atoms too close: (T0302)Y117.CA and (T0302)D124.CA only 0.0000000e+00 apart, marking (T0302)Y117.CA as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0302.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 4 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1753834228.pdb -s /var/tmp/to_scwrl_1753834228.seq -o /var/tmp/from_scwrl_1753834228.pdb > /var/tmp/scwrl_1753834228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1753834228.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1987377988.pdb -s /var/tmp/to_scwrl_1987377988.seq -o /var/tmp/from_scwrl_1987377988.pdb > /var/tmp/scwrl_1987377988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1987377988.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_541203058.pdb -s /var/tmp/to_scwrl_541203058.seq -o /var/tmp/from_scwrl_541203058.pdb > /var/tmp/scwrl_541203058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_541203058.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1923366690.pdb -s /var/tmp/to_scwrl_1923366690.seq -o /var/tmp/from_scwrl_1923366690.pdb > /var/tmp/scwrl_1923366690.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923366690.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2131590794.pdb -s /var/tmp/to_scwrl_2131590794.seq -o /var/tmp/from_scwrl_2131590794.pdb > /var/tmp/scwrl_2131590794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131590794.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1926416713.pdb -s /var/tmp/to_scwrl_1926416713.seq -o /var/tmp/from_scwrl_1926416713.pdb > /var/tmp/scwrl_1926416713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926416713.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_151724440.pdb -s /var/tmp/to_scwrl_151724440.seq -o /var/tmp/from_scwrl_151724440.pdb > /var/tmp/scwrl_151724440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151724440.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1180658132.pdb -s /var/tmp/to_scwrl_1180658132.seq -o /var/tmp/from_scwrl_1180658132.pdb > /var/tmp/scwrl_1180658132.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1180658132.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1853748623.pdb -s /var/tmp/to_scwrl_1853748623.seq -o /var/tmp/from_scwrl_1853748623.pdb > /var/tmp/scwrl_1853748623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1853748623.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_63756243.pdb -s /var/tmp/to_scwrl_63756243.seq -o /var/tmp/from_scwrl_63756243.pdb > /var/tmp/scwrl_63756243.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_63756243.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_104331534.pdb -s /var/tmp/to_scwrl_104331534.seq -o /var/tmp/from_scwrl_104331534.pdb > /var/tmp/scwrl_104331534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104331534.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_457559915.pdb -s /var/tmp/to_scwrl_457559915.seq -o /var/tmp/from_scwrl_457559915.pdb > /var/tmp/scwrl_457559915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457559915.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_322459878.pdb -s /var/tmp/to_scwrl_322459878.seq -o /var/tmp/from_scwrl_322459878.pdb > /var/tmp/scwrl_322459878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322459878.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_215646582.pdb -s /var/tmp/to_scwrl_215646582.seq -o /var/tmp/from_scwrl_215646582.pdb > /var/tmp/scwrl_215646582.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215646582.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1035302827.pdb -s /var/tmp/to_scwrl_1035302827.seq -o /var/tmp/from_scwrl_1035302827.pdb > /var/tmp/scwrl_1035302827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035302827.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_958175038.pdb -s /var/tmp/to_scwrl_958175038.seq -o /var/tmp/from_scwrl_958175038.pdb > /var/tmp/scwrl_958175038.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_958175038.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_784554202.pdb -s /var/tmp/to_scwrl_784554202.seq -o /var/tmp/from_scwrl_784554202.pdb > /var/tmp/scwrl_784554202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784554202.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_764782564.pdb -s /var/tmp/to_scwrl_764782564.seq -o /var/tmp/from_scwrl_764782564.pdb > /var/tmp/scwrl_764782564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764782564.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_561794017.pdb -s /var/tmp/to_scwrl_561794017.seq -o /var/tmp/from_scwrl_561794017.pdb > /var/tmp/scwrl_561794017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_561794017.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2116926253.pdb -s /var/tmp/to_scwrl_2116926253.seq -o /var/tmp/from_scwrl_2116926253.pdb > /var/tmp/scwrl_2116926253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116926253.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1706774103.pdb -s /var/tmp/to_scwrl_1706774103.seq -o /var/tmp/from_scwrl_1706774103.pdb > /var/tmp/scwrl_1706774103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706774103.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_150663285.pdb -s /var/tmp/to_scwrl_150663285.seq -o /var/tmp/from_scwrl_150663285.pdb > /var/tmp/scwrl_150663285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_150663285.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1171863858.pdb -s /var/tmp/to_scwrl_1171863858.seq -o /var/tmp/from_scwrl_1171863858.pdb > /var/tmp/scwrl_1171863858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1171863858.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_79394560.pdb -s /var/tmp/to_scwrl_79394560.seq -o /var/tmp/from_scwrl_79394560.pdb > /var/tmp/scwrl_79394560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_79394560.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2129439335.pdb -s /var/tmp/to_scwrl_2129439335.seq -o /var/tmp/from_scwrl_2129439335.pdb > /var/tmp/scwrl_2129439335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2129439335.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1514201139.pdb -s /var/tmp/to_scwrl_1514201139.seq -o /var/tmp/from_scwrl_1514201139.pdb > /var/tmp/scwrl_1514201139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514201139.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1377606078.pdb -s /var/tmp/to_scwrl_1377606078.seq -o /var/tmp/from_scwrl_1377606078.pdb > /var/tmp/scwrl_1377606078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377606078.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_246866276.pdb -s /var/tmp/to_scwrl_246866276.seq -o /var/tmp/from_scwrl_246866276.pdb > /var/tmp/scwrl_246866276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246866276.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1431894286.pdb -s /var/tmp/to_scwrl_1431894286.seq -o /var/tmp/from_scwrl_1431894286.pdb > /var/tmp/scwrl_1431894286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1431894286.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1108694973.pdb -s /var/tmp/to_scwrl_1108694973.seq -o /var/tmp/from_scwrl_1108694973.pdb > /var/tmp/scwrl_1108694973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108694973.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2047166044.pdb -s /var/tmp/to_scwrl_2047166044.seq -o /var/tmp/from_scwrl_2047166044.pdb > /var/tmp/scwrl_2047166044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2047166044.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1038244868.pdb -s /var/tmp/to_scwrl_1038244868.seq -o /var/tmp/from_scwrl_1038244868.pdb > /var/tmp/scwrl_1038244868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038244868.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_948589315.pdb -s /var/tmp/to_scwrl_948589315.seq -o /var/tmp/from_scwrl_948589315.pdb > /var/tmp/scwrl_948589315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948589315.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_440885456.pdb -s /var/tmp/to_scwrl_440885456.seq -o /var/tmp/from_scwrl_440885456.pdb > /var/tmp/scwrl_440885456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440885456.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_814127911.pdb -s /var/tmp/to_scwrl_814127911.seq -o /var/tmp/from_scwrl_814127911.pdb > /var/tmp/scwrl_814127911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_814127911.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_932696462.pdb -s /var/tmp/to_scwrl_932696462.seq -o /var/tmp/from_scwrl_932696462.pdb > /var/tmp/scwrl_932696462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_932696462.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_219818522.pdb -s /var/tmp/to_scwrl_219818522.seq -o /var/tmp/from_scwrl_219818522.pdb > /var/tmp/scwrl_219818522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219818522.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_965852351.pdb -s /var/tmp/to_scwrl_965852351.seq -o /var/tmp/from_scwrl_965852351.pdb > /var/tmp/scwrl_965852351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_965852351.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2113354594.pdb -s /var/tmp/to_scwrl_2113354594.seq -o /var/tmp/from_scwrl_2113354594.pdb > /var/tmp/scwrl_2113354594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2113354594.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2073567145.pdb -s /var/tmp/to_scwrl_2073567145.seq -o /var/tmp/from_scwrl_2073567145.pdb > /var/tmp/scwrl_2073567145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2073567145.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1029608595.pdb -s /var/tmp/to_scwrl_1029608595.seq -o /var/tmp/from_scwrl_1029608595.pdb > /var/tmp/scwrl_1029608595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1029608595.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_70202481.pdb -s /var/tmp/to_scwrl_70202481.seq -o /var/tmp/from_scwrl_70202481.pdb > /var/tmp/scwrl_70202481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70202481.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_383643414.pdb -s /var/tmp/to_scwrl_383643414.seq -o /var/tmp/from_scwrl_383643414.pdb > /var/tmp/scwrl_383643414.log Error: Couldn't open file /var/tmp/from_scwrl_383643414.pdb or /var/tmp/from_scwrl_383643414.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_383643414_b.pdb or decoys//var/tmp/from_scwrl_383643414_b.pdb.gz for input Trying /var/tmp/from_scwrl_383643414_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_383643414_b.pdb or /var/tmp/from_scwrl_383643414_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_383643414_a.pdb or decoys//var/tmp/from_scwrl_383643414_a.pdb.gz for input Trying /var/tmp/from_scwrl_383643414_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_383643414_a.pdb or /var/tmp/from_scwrl_383643414_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_383643414.pdb or /var/tmp/from_scwrl_383643414_b.pdb or /var/tmp/from_scwrl_383643414_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1352068472.pdb -s /var/tmp/to_scwrl_1352068472.seq -o /var/tmp/from_scwrl_1352068472.pdb > /var/tmp/scwrl_1352068472.log Error: Couldn't open file /var/tmp/from_scwrl_1352068472.pdb or /var/tmp/from_scwrl_1352068472.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1352068472_b.pdb or decoys//var/tmp/from_scwrl_1352068472_b.pdb.gz for input Trying /var/tmp/from_scwrl_1352068472_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1352068472_b.pdb or /var/tmp/from_scwrl_1352068472_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1352068472_a.pdb or decoys//var/tmp/from_scwrl_1352068472_a.pdb.gz for input Trying /var/tmp/from_scwrl_1352068472_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1352068472_a.pdb or /var/tmp/from_scwrl_1352068472_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1352068472.pdb or /var/tmp/from_scwrl_1352068472_b.pdb or /var/tmp/from_scwrl_1352068472_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_285849064.pdb -s /var/tmp/to_scwrl_285849064.seq -o /var/tmp/from_scwrl_285849064.pdb > /var/tmp/scwrl_285849064.log Error: Couldn't open file /var/tmp/from_scwrl_285849064.pdb or /var/tmp/from_scwrl_285849064.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_285849064_b.pdb or decoys//var/tmp/from_scwrl_285849064_b.pdb.gz for input Trying /var/tmp/from_scwrl_285849064_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_285849064_b.pdb or /var/tmp/from_scwrl_285849064_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_285849064_a.pdb or decoys//var/tmp/from_scwrl_285849064_a.pdb.gz for input Trying /var/tmp/from_scwrl_285849064_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_285849064_a.pdb or /var/tmp/from_scwrl_285849064_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_285849064.pdb or /var/tmp/from_scwrl_285849064_b.pdb or /var/tmp/from_scwrl_285849064_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1418946240.pdb -s /var/tmp/to_scwrl_1418946240.seq -o /var/tmp/from_scwrl_1418946240.pdb > /var/tmp/scwrl_1418946240.log Error: Couldn't open file /var/tmp/from_scwrl_1418946240.pdb or /var/tmp/from_scwrl_1418946240.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1418946240_b.pdb or decoys//var/tmp/from_scwrl_1418946240_b.pdb.gz for input Trying /var/tmp/from_scwrl_1418946240_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1418946240_b.pdb or /var/tmp/from_scwrl_1418946240_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1418946240_a.pdb or decoys//var/tmp/from_scwrl_1418946240_a.pdb.gz for input Trying /var/tmp/from_scwrl_1418946240_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1418946240_a.pdb or /var/tmp/from_scwrl_1418946240_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1418946240.pdb or /var/tmp/from_scwrl_1418946240_b.pdb or /var/tmp/from_scwrl_1418946240_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_162759863.pdb -s /var/tmp/to_scwrl_162759863.seq -o /var/tmp/from_scwrl_162759863.pdb > /var/tmp/scwrl_162759863.log Error: Couldn't open file /var/tmp/from_scwrl_162759863.pdb or /var/tmp/from_scwrl_162759863.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_162759863_b.pdb or decoys//var/tmp/from_scwrl_162759863_b.pdb.gz for input Trying /var/tmp/from_scwrl_162759863_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_162759863_b.pdb or /var/tmp/from_scwrl_162759863_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_162759863_a.pdb or decoys//var/tmp/from_scwrl_162759863_a.pdb.gz for input Trying /var/tmp/from_scwrl_162759863_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_162759863_a.pdb or /var/tmp/from_scwrl_162759863_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_162759863.pdb or /var/tmp/from_scwrl_162759863_b.pdb or /var/tmp/from_scwrl_162759863_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1070403266.pdb -s /var/tmp/to_scwrl_1070403266.seq -o /var/tmp/from_scwrl_1070403266.pdb > /var/tmp/scwrl_1070403266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1070403266.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_36245157.pdb -s /var/tmp/to_scwrl_36245157.seq -o /var/tmp/from_scwrl_36245157.pdb > /var/tmp/scwrl_36245157.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_36245157.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_724553880.pdb -s /var/tmp/to_scwrl_724553880.seq -o /var/tmp/from_scwrl_724553880.pdb > /var/tmp/scwrl_724553880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724553880.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1039845872.pdb -s /var/tmp/to_scwrl_1039845872.seq -o /var/tmp/from_scwrl_1039845872.pdb > /var/tmp/scwrl_1039845872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1039845872.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1743019261.pdb -s /var/tmp/to_scwrl_1743019261.seq -o /var/tmp/from_scwrl_1743019261.pdb > /var/tmp/scwrl_1743019261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1743019261.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_875217165.pdb -s /var/tmp/to_scwrl_875217165.seq -o /var/tmp/from_scwrl_875217165.pdb > /var/tmp/scwrl_875217165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875217165.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_64226084.pdb -s /var/tmp/to_scwrl_64226084.seq -o /var/tmp/from_scwrl_64226084.pdb > /var/tmp/scwrl_64226084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64226084.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1822413821.pdb -s /var/tmp/to_scwrl_1822413821.seq -o /var/tmp/from_scwrl_1822413821.pdb > /var/tmp/scwrl_1822413821.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1822413821.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_857172853.pdb -s /var/tmp/to_scwrl_857172853.seq -o /var/tmp/from_scwrl_857172853.pdb > /var/tmp/scwrl_857172853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_857172853.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1578427223.pdb -s /var/tmp/to_scwrl_1578427223.seq -o /var/tmp/from_scwrl_1578427223.pdb > /var/tmp/scwrl_1578427223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1578427223.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1052536253.pdb -s /var/tmp/to_scwrl_1052536253.seq -o /var/tmp/from_scwrl_1052536253.pdb > /var/tmp/scwrl_1052536253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052536253.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1104039128.pdb -s /var/tmp/to_scwrl_1104039128.seq -o /var/tmp/from_scwrl_1104039128.pdb > /var/tmp/scwrl_1104039128.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1104039128.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_862837863.pdb -s /var/tmp/to_scwrl_862837863.seq -o /var/tmp/from_scwrl_862837863.pdb > /var/tmp/scwrl_862837863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862837863.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_13747579.pdb -s /var/tmp/to_scwrl_13747579.seq -o /var/tmp/from_scwrl_13747579.pdb > /var/tmp/scwrl_13747579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13747579.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1003721527.pdb -s /var/tmp/to_scwrl_1003721527.seq -o /var/tmp/from_scwrl_1003721527.pdb > /var/tmp/scwrl_1003721527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1003721527.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1901082730.pdb -s /var/tmp/to_scwrl_1901082730.seq -o /var/tmp/from_scwrl_1901082730.pdb > /var/tmp/scwrl_1901082730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1901082730.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_962336894.pdb -s /var/tmp/to_scwrl_962336894.seq -o /var/tmp/from_scwrl_962336894.pdb > /var/tmp/scwrl_962336894.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962336894.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1444606982.pdb -s /var/tmp/to_scwrl_1444606982.seq -o /var/tmp/from_scwrl_1444606982.pdb > /var/tmp/scwrl_1444606982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1444606982.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_567726995.pdb -s /var/tmp/to_scwrl_567726995.seq -o /var/tmp/from_scwrl_567726995.pdb > /var/tmp/scwrl_567726995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_567726995.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1895033355.pdb -s /var/tmp/to_scwrl_1895033355.seq -o /var/tmp/from_scwrl_1895033355.pdb > /var/tmp/scwrl_1895033355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895033355.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1664425504.pdb -s /var/tmp/to_scwrl_1664425504.seq -o /var/tmp/from_scwrl_1664425504.pdb > /var/tmp/scwrl_1664425504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664425504.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1533579345.pdb -s /var/tmp/to_scwrl_1533579345.seq -o /var/tmp/from_scwrl_1533579345.pdb > /var/tmp/scwrl_1533579345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533579345.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1860904303.pdb -s /var/tmp/to_scwrl_1860904303.seq -o /var/tmp/from_scwrl_1860904303.pdb > /var/tmp/scwrl_1860904303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860904303.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1590509003.pdb -s /var/tmp/to_scwrl_1590509003.seq -o /var/tmp/from_scwrl_1590509003.pdb > /var/tmp/scwrl_1590509003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1590509003.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_415704293.pdb -s /var/tmp/to_scwrl_415704293.seq -o /var/tmp/from_scwrl_415704293.pdb > /var/tmp/scwrl_415704293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_415704293.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1931106784.pdb -s /var/tmp/to_scwrl_1931106784.seq -o /var/tmp/from_scwrl_1931106784.pdb > /var/tmp/scwrl_1931106784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931106784.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1974152417.pdb -s /var/tmp/to_scwrl_1974152417.seq -o /var/tmp/from_scwrl_1974152417.pdb > /var/tmp/scwrl_1974152417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974152417.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1767772765.pdb -s /var/tmp/to_scwrl_1767772765.seq -o /var/tmp/from_scwrl_1767772765.pdb > /var/tmp/scwrl_1767772765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1767772765.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_69472201.pdb -s /var/tmp/to_scwrl_69472201.seq -o /var/tmp/from_scwrl_69472201.pdb > /var/tmp/scwrl_69472201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69472201.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1245615010.pdb -s /var/tmp/to_scwrl_1245615010.seq -o /var/tmp/from_scwrl_1245615010.pdb > /var/tmp/scwrl_1245615010.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1245615010.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1930532628.pdb -s /var/tmp/to_scwrl_1930532628.seq -o /var/tmp/from_scwrl_1930532628.pdb > /var/tmp/scwrl_1930532628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930532628.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1139875466.pdb -s /var/tmp/to_scwrl_1139875466.seq -o /var/tmp/from_scwrl_1139875466.pdb > /var/tmp/scwrl_1139875466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1139875466.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1281860168.pdb -s /var/tmp/to_scwrl_1281860168.seq -o /var/tmp/from_scwrl_1281860168.pdb > /var/tmp/scwrl_1281860168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281860168.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_507602861.pdb -s /var/tmp/to_scwrl_507602861.seq -o /var/tmp/from_scwrl_507602861.pdb > /var/tmp/scwrl_507602861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_507602861.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_32237692.pdb -s /var/tmp/to_scwrl_32237692.seq -o /var/tmp/from_scwrl_32237692.pdb > /var/tmp/scwrl_32237692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_32237692.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_877395783.pdb -s /var/tmp/to_scwrl_877395783.seq -o /var/tmp/from_scwrl_877395783.pdb > /var/tmp/scwrl_877395783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877395783.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1382820025.pdb -s /var/tmp/to_scwrl_1382820025.seq -o /var/tmp/from_scwrl_1382820025.pdb > /var/tmp/scwrl_1382820025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382820025.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_96463776.pdb -s /var/tmp/to_scwrl_96463776.seq -o /var/tmp/from_scwrl_96463776.pdb > /var/tmp/scwrl_96463776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_96463776.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_552325957.pdb -s /var/tmp/to_scwrl_552325957.seq -o /var/tmp/from_scwrl_552325957.pdb > /var/tmp/scwrl_552325957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552325957.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_92509231.pdb -s /var/tmp/to_scwrl_92509231.seq -o /var/tmp/from_scwrl_92509231.pdb > /var/tmp/scwrl_92509231.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_92509231.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1674890999.pdb -s /var/tmp/to_scwrl_1674890999.seq -o /var/tmp/from_scwrl_1674890999.pdb > /var/tmp/scwrl_1674890999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1674890999.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1604862209.pdb -s /var/tmp/to_scwrl_1604862209.seq -o /var/tmp/from_scwrl_1604862209.pdb > /var/tmp/scwrl_1604862209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604862209.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1196548360.pdb -s /var/tmp/to_scwrl_1196548360.seq -o /var/tmp/from_scwrl_1196548360.pdb > /var/tmp/scwrl_1196548360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196548360.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_390245216.pdb -s /var/tmp/to_scwrl_390245216.seq -o /var/tmp/from_scwrl_390245216.pdb > /var/tmp/scwrl_390245216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_390245216.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1618609789.pdb -s /var/tmp/to_scwrl_1618609789.seq -o /var/tmp/from_scwrl_1618609789.pdb > /var/tmp/scwrl_1618609789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1618609789.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_52786240.pdb -s /var/tmp/to_scwrl_52786240.seq -o /var/tmp/from_scwrl_52786240.pdb > /var/tmp/scwrl_52786240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_52786240.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_143844299.pdb -s /var/tmp/to_scwrl_143844299.seq -o /var/tmp/from_scwrl_143844299.pdb > /var/tmp/scwrl_143844299.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_143844299.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_433463036.pdb -s /var/tmp/to_scwrl_433463036.seq -o /var/tmp/from_scwrl_433463036.pdb > /var/tmp/scwrl_433463036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_433463036.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1497393222.pdb -s /var/tmp/to_scwrl_1497393222.seq -o /var/tmp/from_scwrl_1497393222.pdb > /var/tmp/scwrl_1497393222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1497393222.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_711571294.pdb -s /var/tmp/to_scwrl_711571294.seq -o /var/tmp/from_scwrl_711571294.pdb > /var/tmp/scwrl_711571294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_711571294.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_181012745.pdb -s /var/tmp/to_scwrl_181012745.seq -o /var/tmp/from_scwrl_181012745.pdb > /var/tmp/scwrl_181012745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181012745.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1014335080.pdb -s /var/tmp/to_scwrl_1014335080.seq -o /var/tmp/from_scwrl_1014335080.pdb > /var/tmp/scwrl_1014335080.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1014335080.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_97666993.pdb -s /var/tmp/to_scwrl_97666993.seq -o /var/tmp/from_scwrl_97666993.pdb > /var/tmp/scwrl_97666993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_97666993.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2041917048.pdb -s /var/tmp/to_scwrl_2041917048.seq -o /var/tmp/from_scwrl_2041917048.pdb > /var/tmp/scwrl_2041917048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041917048.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_457360436.pdb -s /var/tmp/to_scwrl_457360436.seq -o /var/tmp/from_scwrl_457360436.pdb > /var/tmp/scwrl_457360436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457360436.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_513371286.pdb -s /var/tmp/to_scwrl_513371286.seq -o /var/tmp/from_scwrl_513371286.pdb > /var/tmp/scwrl_513371286.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_513371286.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1825540185.pdb -s /var/tmp/to_scwrl_1825540185.seq -o /var/tmp/from_scwrl_1825540185.pdb > /var/tmp/scwrl_1825540185.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1825540185.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_284029206.pdb -s /var/tmp/to_scwrl_284029206.seq -o /var/tmp/from_scwrl_284029206.pdb > /var/tmp/scwrl_284029206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284029206.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_133660405.pdb -s /var/tmp/to_scwrl_133660405.seq -o /var/tmp/from_scwrl_133660405.pdb > /var/tmp/scwrl_133660405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133660405.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1895012387.pdb -s /var/tmp/to_scwrl_1895012387.seq -o /var/tmp/from_scwrl_1895012387.pdb > /var/tmp/scwrl_1895012387.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1895012387.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1529644217.pdb -s /var/tmp/to_scwrl_1529644217.seq -o /var/tmp/from_scwrl_1529644217.pdb > /var/tmp/scwrl_1529644217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529644217.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2064193033.pdb -s /var/tmp/to_scwrl_2064193033.seq -o /var/tmp/from_scwrl_2064193033.pdb > /var/tmp/scwrl_2064193033.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064193033.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_887404207.pdb -s /var/tmp/to_scwrl_887404207.seq -o /var/tmp/from_scwrl_887404207.pdb > /var/tmp/scwrl_887404207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887404207.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_664020739.pdb -s /var/tmp/to_scwrl_664020739.seq -o /var/tmp/from_scwrl_664020739.pdb > /var/tmp/scwrl_664020739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_664020739.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_424312248.pdb -s /var/tmp/to_scwrl_424312248.seq -o /var/tmp/from_scwrl_424312248.pdb > /var/tmp/scwrl_424312248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_424312248.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_919641899.pdb -s /var/tmp/to_scwrl_919641899.seq -o /var/tmp/from_scwrl_919641899.pdb > /var/tmp/scwrl_919641899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919641899.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1541416521.pdb -s /var/tmp/to_scwrl_1541416521.seq -o /var/tmp/from_scwrl_1541416521.pdb > /var/tmp/scwrl_1541416521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541416521.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1807132273.pdb -s /var/tmp/to_scwrl_1807132273.seq -o /var/tmp/from_scwrl_1807132273.pdb > /var/tmp/scwrl_1807132273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1807132273.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1016105675.pdb -s /var/tmp/to_scwrl_1016105675.seq -o /var/tmp/from_scwrl_1016105675.pdb > /var/tmp/scwrl_1016105675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016105675.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2093742478.pdb -s /var/tmp/to_scwrl_2093742478.seq -o /var/tmp/from_scwrl_2093742478.pdb > /var/tmp/scwrl_2093742478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2093742478.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1899641505.pdb -s /var/tmp/to_scwrl_1899641505.seq -o /var/tmp/from_scwrl_1899641505.pdb > /var/tmp/scwrl_1899641505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899641505.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_543513028.pdb -s /var/tmp/to_scwrl_543513028.seq -o /var/tmp/from_scwrl_543513028.pdb > /var/tmp/scwrl_543513028.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_543513028.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1551121040.pdb -s /var/tmp/to_scwrl_1551121040.seq -o /var/tmp/from_scwrl_1551121040.pdb > /var/tmp/scwrl_1551121040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551121040.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_948706219.pdb -s /var/tmp/to_scwrl_948706219.seq -o /var/tmp/from_scwrl_948706219.pdb > /var/tmp/scwrl_948706219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948706219.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_933758244.pdb -s /var/tmp/to_scwrl_933758244.seq -o /var/tmp/from_scwrl_933758244.pdb > /var/tmp/scwrl_933758244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933758244.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1022247183.pdb -s /var/tmp/to_scwrl_1022247183.seq -o /var/tmp/from_scwrl_1022247183.pdb > /var/tmp/scwrl_1022247183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1022247183.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1001492459.pdb -s /var/tmp/to_scwrl_1001492459.seq -o /var/tmp/from_scwrl_1001492459.pdb > /var/tmp/scwrl_1001492459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001492459.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1077602542.pdb -s /var/tmp/to_scwrl_1077602542.seq -o /var/tmp/from_scwrl_1077602542.pdb > /var/tmp/scwrl_1077602542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1077602542.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1455710219.pdb -s /var/tmp/to_scwrl_1455710219.seq -o /var/tmp/from_scwrl_1455710219.pdb > /var/tmp/scwrl_1455710219.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1455710219.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_351402034.pdb -s /var/tmp/to_scwrl_351402034.seq -o /var/tmp/from_scwrl_351402034.pdb > /var/tmp/scwrl_351402034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_351402034.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1789173837.pdb -s /var/tmp/to_scwrl_1789173837.seq -o /var/tmp/from_scwrl_1789173837.pdb > /var/tmp/scwrl_1789173837.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789173837.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1636722964.pdb -s /var/tmp/to_scwrl_1636722964.seq -o /var/tmp/from_scwrl_1636722964.pdb > /var/tmp/scwrl_1636722964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636722964.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1365737113.pdb -s /var/tmp/to_scwrl_1365737113.seq -o /var/tmp/from_scwrl_1365737113.pdb > /var/tmp/scwrl_1365737113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1365737113.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1886840830.pdb -s /var/tmp/to_scwrl_1886840830.seq -o /var/tmp/from_scwrl_1886840830.pdb > /var/tmp/scwrl_1886840830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1886840830.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1531156365.pdb -s /var/tmp/to_scwrl_1531156365.seq -o /var/tmp/from_scwrl_1531156365.pdb > /var/tmp/scwrl_1531156365.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1531156365.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1823097550.pdb -s /var/tmp/to_scwrl_1823097550.seq -o /var/tmp/from_scwrl_1823097550.pdb > /var/tmp/scwrl_1823097550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1823097550.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_252728469.pdb -s /var/tmp/to_scwrl_252728469.seq -o /var/tmp/from_scwrl_252728469.pdb > /var/tmp/scwrl_252728469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252728469.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1209212903.pdb -s /var/tmp/to_scwrl_1209212903.seq -o /var/tmp/from_scwrl_1209212903.pdb > /var/tmp/scwrl_1209212903.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1209212903.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2107126756.pdb -s /var/tmp/to_scwrl_2107126756.seq -o /var/tmp/from_scwrl_2107126756.pdb > /var/tmp/scwrl_2107126756.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107126756.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_386388874.pdb -s /var/tmp/to_scwrl_386388874.seq -o /var/tmp/from_scwrl_386388874.pdb > /var/tmp/scwrl_386388874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_386388874.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_956741644.pdb -s /var/tmp/to_scwrl_956741644.seq -o /var/tmp/from_scwrl_956741644.pdb > /var/tmp/scwrl_956741644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_956741644.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1489287326.pdb -s /var/tmp/to_scwrl_1489287326.seq -o /var/tmp/from_scwrl_1489287326.pdb > /var/tmp/scwrl_1489287326.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489287326.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_303098261.pdb -s /var/tmp/to_scwrl_303098261.seq -o /var/tmp/from_scwrl_303098261.pdb > /var/tmp/scwrl_303098261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_303098261.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1844145851.pdb -s /var/tmp/to_scwrl_1844145851.seq -o /var/tmp/from_scwrl_1844145851.pdb > /var/tmp/scwrl_1844145851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1844145851.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_5824418.pdb -s /var/tmp/to_scwrl_5824418.seq -o /var/tmp/from_scwrl_5824418.pdb > /var/tmp/scwrl_5824418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_5824418.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_727410509.pdb -s /var/tmp/to_scwrl_727410509.seq -o /var/tmp/from_scwrl_727410509.pdb > /var/tmp/scwrl_727410509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_727410509.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_616304103.pdb -s /var/tmp/to_scwrl_616304103.seq -o /var/tmp/from_scwrl_616304103.pdb > /var/tmp/scwrl_616304103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_616304103.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1547240939.pdb -s /var/tmp/to_scwrl_1547240939.seq -o /var/tmp/from_scwrl_1547240939.pdb > /var/tmp/scwrl_1547240939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1547240939.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_387059135.pdb -s /var/tmp/to_scwrl_387059135.seq -o /var/tmp/from_scwrl_387059135.pdb > /var/tmp/scwrl_387059135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_387059135.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1632409778.pdb -s /var/tmp/to_scwrl_1632409778.seq -o /var/tmp/from_scwrl_1632409778.pdb > /var/tmp/scwrl_1632409778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1632409778.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1493499770.pdb -s /var/tmp/to_scwrl_1493499770.seq -o /var/tmp/from_scwrl_1493499770.pdb > /var/tmp/scwrl_1493499770.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493499770.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_139216993.pdb -s /var/tmp/to_scwrl_139216993.seq -o /var/tmp/from_scwrl_139216993.pdb > /var/tmp/scwrl_139216993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_139216993.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_28439159.pdb -s /var/tmp/to_scwrl_28439159.seq -o /var/tmp/from_scwrl_28439159.pdb > /var/tmp/scwrl_28439159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28439159.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_897137165.pdb -s /var/tmp/to_scwrl_897137165.seq -o /var/tmp/from_scwrl_897137165.pdb > /var/tmp/scwrl_897137165.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897137165.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1087923211.pdb -s /var/tmp/to_scwrl_1087923211.seq -o /var/tmp/from_scwrl_1087923211.pdb > /var/tmp/scwrl_1087923211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1087923211.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_962197403.pdb -s /var/tmp/to_scwrl_962197403.seq -o /var/tmp/from_scwrl_962197403.pdb > /var/tmp/scwrl_962197403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962197403.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1919384347.pdb -s /var/tmp/to_scwrl_1919384347.seq -o /var/tmp/from_scwrl_1919384347.pdb > /var/tmp/scwrl_1919384347.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1919384347.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2089415670.pdb -s /var/tmp/to_scwrl_2089415670.seq -o /var/tmp/from_scwrl_2089415670.pdb > /var/tmp/scwrl_2089415670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2089415670.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2039799945.pdb -s /var/tmp/to_scwrl_2039799945.seq -o /var/tmp/from_scwrl_2039799945.pdb > /var/tmp/scwrl_2039799945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2039799945.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1227610919.pdb -s /var/tmp/to_scwrl_1227610919.seq -o /var/tmp/from_scwrl_1227610919.pdb > /var/tmp/scwrl_1227610919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227610919.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_293334057.pdb -s /var/tmp/to_scwrl_293334057.seq -o /var/tmp/from_scwrl_293334057.pdb > /var/tmp/scwrl_293334057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_293334057.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1681490135.pdb -s /var/tmp/to_scwrl_1681490135.seq -o /var/tmp/from_scwrl_1681490135.pdb > /var/tmp/scwrl_1681490135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681490135.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_716850237.pdb -s /var/tmp/to_scwrl_716850237.seq -o /var/tmp/from_scwrl_716850237.pdb > /var/tmp/scwrl_716850237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_716850237.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 3 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1659071171.pdb -s /var/tmp/to_scwrl_1659071171.seq -o /var/tmp/from_scwrl_1659071171.pdb > /var/tmp/scwrl_1659071171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659071171.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1420847318.pdb -s /var/tmp/to_scwrl_1420847318.seq -o /var/tmp/from_scwrl_1420847318.pdb > /var/tmp/scwrl_1420847318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1420847318.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_100522955.pdb -s /var/tmp/to_scwrl_100522955.seq -o /var/tmp/from_scwrl_100522955.pdb > /var/tmp/scwrl_100522955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_100522955.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1334685074.pdb -s /var/tmp/to_scwrl_1334685074.seq -o /var/tmp/from_scwrl_1334685074.pdb > /var/tmp/scwrl_1334685074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1334685074.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1673575788.pdb -s /var/tmp/to_scwrl_1673575788.seq -o /var/tmp/from_scwrl_1673575788.pdb > /var/tmp/scwrl_1673575788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673575788.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1309735859.pdb -s /var/tmp/to_scwrl_1309735859.seq -o /var/tmp/from_scwrl_1309735859.pdb > /var/tmp/scwrl_1309735859.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1309735859.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1294328183.pdb -s /var/tmp/to_scwrl_1294328183.seq -o /var/tmp/from_scwrl_1294328183.pdb > /var/tmp/scwrl_1294328183.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294328183.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2059964662.pdb -s /var/tmp/to_scwrl_2059964662.seq -o /var/tmp/from_scwrl_2059964662.pdb > /var/tmp/scwrl_2059964662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059964662.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_118993856.pdb -s /var/tmp/to_scwrl_118993856.seq -o /var/tmp/from_scwrl_118993856.pdb > /var/tmp/scwrl_118993856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_118993856.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_636131864.pdb -s /var/tmp/to_scwrl_636131864.seq -o /var/tmp/from_scwrl_636131864.pdb > /var/tmp/scwrl_636131864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636131864.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_215579276.pdb -s /var/tmp/to_scwrl_215579276.seq -o /var/tmp/from_scwrl_215579276.pdb > /var/tmp/scwrl_215579276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215579276.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1963139707.pdb -s /var/tmp/to_scwrl_1963139707.seq -o /var/tmp/from_scwrl_1963139707.pdb > /var/tmp/scwrl_1963139707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1963139707.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_641956282.pdb -s /var/tmp/to_scwrl_641956282.seq -o /var/tmp/from_scwrl_641956282.pdb > /var/tmp/scwrl_641956282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641956282.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_942989785.pdb -s /var/tmp/to_scwrl_942989785.seq -o /var/tmp/from_scwrl_942989785.pdb > /var/tmp/scwrl_942989785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_942989785.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_431960164.pdb -s /var/tmp/to_scwrl_431960164.seq -o /var/tmp/from_scwrl_431960164.pdb > /var/tmp/scwrl_431960164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_431960164.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_41713575.pdb -s /var/tmp/to_scwrl_41713575.seq -o /var/tmp/from_scwrl_41713575.pdb > /var/tmp/scwrl_41713575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41713575.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1330048920.pdb -s /var/tmp/to_scwrl_1330048920.seq -o /var/tmp/from_scwrl_1330048920.pdb > /var/tmp/scwrl_1330048920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330048920.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2064369942.pdb -s /var/tmp/to_scwrl_2064369942.seq -o /var/tmp/from_scwrl_2064369942.pdb > /var/tmp/scwrl_2064369942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2064369942.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1535213345.pdb -s /var/tmp/to_scwrl_1535213345.seq -o /var/tmp/from_scwrl_1535213345.pdb > /var/tmp/scwrl_1535213345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1535213345.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1469265913.pdb -s /var/tmp/to_scwrl_1469265913.seq -o /var/tmp/from_scwrl_1469265913.pdb > /var/tmp/scwrl_1469265913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1469265913.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2092809101.pdb -s /var/tmp/to_scwrl_2092809101.seq -o /var/tmp/from_scwrl_2092809101.pdb > /var/tmp/scwrl_2092809101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2092809101.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_284866863.pdb -s /var/tmp/to_scwrl_284866863.seq -o /var/tmp/from_scwrl_284866863.pdb > /var/tmp/scwrl_284866863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284866863.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_409705479.pdb -s /var/tmp/to_scwrl_409705479.seq -o /var/tmp/from_scwrl_409705479.pdb > /var/tmp/scwrl_409705479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_409705479.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_907522857.pdb -s /var/tmp/to_scwrl_907522857.seq -o /var/tmp/from_scwrl_907522857.pdb > /var/tmp/scwrl_907522857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_907522857.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_56767564.pdb -s /var/tmp/to_scwrl_56767564.seq -o /var/tmp/from_scwrl_56767564.pdb > /var/tmp/scwrl_56767564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_56767564.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_351637502.pdb -s /var/tmp/to_scwrl_351637502.seq -o /var/tmp/from_scwrl_351637502.pdb > /var/tmp/scwrl_351637502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_351637502.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_799839155.pdb -s /var/tmp/to_scwrl_799839155.seq -o /var/tmp/from_scwrl_799839155.pdb > /var/tmp/scwrl_799839155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_799839155.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1284378483.pdb -s /var/tmp/to_scwrl_1284378483.seq -o /var/tmp/from_scwrl_1284378483.pdb > /var/tmp/scwrl_1284378483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1284378483.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_644971560.pdb -s /var/tmp/to_scwrl_644971560.seq -o /var/tmp/from_scwrl_644971560.pdb > /var/tmp/scwrl_644971560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644971560.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_333845644.pdb -s /var/tmp/to_scwrl_333845644.seq -o /var/tmp/from_scwrl_333845644.pdb > /var/tmp/scwrl_333845644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_333845644.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2001228721.pdb -s /var/tmp/to_scwrl_2001228721.seq -o /var/tmp/from_scwrl_2001228721.pdb > /var/tmp/scwrl_2001228721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2001228721.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_156559084.pdb -s /var/tmp/to_scwrl_156559084.seq -o /var/tmp/from_scwrl_156559084.pdb > /var/tmp/scwrl_156559084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_156559084.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1754692962.pdb -s /var/tmp/to_scwrl_1754692962.seq -o /var/tmp/from_scwrl_1754692962.pdb > /var/tmp/scwrl_1754692962.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754692962.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2101751676.pdb -s /var/tmp/to_scwrl_2101751676.seq -o /var/tmp/from_scwrl_2101751676.pdb > /var/tmp/scwrl_2101751676.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101751676.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1491244158.pdb -s /var/tmp/to_scwrl_1491244158.seq -o /var/tmp/from_scwrl_1491244158.pdb > /var/tmp/scwrl_1491244158.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1491244158.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1280785103.pdb -s /var/tmp/to_scwrl_1280785103.seq -o /var/tmp/from_scwrl_1280785103.pdb > /var/tmp/scwrl_1280785103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280785103.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1264003888.pdb -s /var/tmp/to_scwrl_1264003888.seq -o /var/tmp/from_scwrl_1264003888.pdb > /var/tmp/scwrl_1264003888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1264003888.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_638088695.pdb -s /var/tmp/to_scwrl_638088695.seq -o /var/tmp/from_scwrl_638088695.pdb > /var/tmp/scwrl_638088695.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_638088695.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1193266119.pdb -s /var/tmp/to_scwrl_1193266119.seq -o /var/tmp/from_scwrl_1193266119.pdb > /var/tmp/scwrl_1193266119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193266119.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1382997745.pdb -s /var/tmp/to_scwrl_1382997745.seq -o /var/tmp/from_scwrl_1382997745.pdb > /var/tmp/scwrl_1382997745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382997745.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1274220558.pdb -s /var/tmp/to_scwrl_1274220558.seq -o /var/tmp/from_scwrl_1274220558.pdb > /var/tmp/scwrl_1274220558.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274220558.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1408845395.pdb -s /var/tmp/to_scwrl_1408845395.seq -o /var/tmp/from_scwrl_1408845395.pdb > /var/tmp/scwrl_1408845395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1408845395.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1198653805.pdb -s /var/tmp/to_scwrl_1198653805.seq -o /var/tmp/from_scwrl_1198653805.pdb > /var/tmp/scwrl_1198653805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1198653805.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1916176841.pdb -s /var/tmp/to_scwrl_1916176841.seq -o /var/tmp/from_scwrl_1916176841.pdb > /var/tmp/scwrl_1916176841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916176841.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_204351534.pdb -s /var/tmp/to_scwrl_204351534.seq -o /var/tmp/from_scwrl_204351534.pdb > /var/tmp/scwrl_204351534.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204351534.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1630613969.pdb -s /var/tmp/to_scwrl_1630613969.seq -o /var/tmp/from_scwrl_1630613969.pdb > /var/tmp/scwrl_1630613969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630613969.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1957890416.pdb -s /var/tmp/to_scwrl_1957890416.seq -o /var/tmp/from_scwrl_1957890416.pdb > /var/tmp/scwrl_1957890416.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1957890416.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1534400454.pdb -s /var/tmp/to_scwrl_1534400454.seq -o /var/tmp/from_scwrl_1534400454.pdb > /var/tmp/scwrl_1534400454.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1534400454.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1547500264.pdb -s /var/tmp/to_scwrl_1547500264.seq -o /var/tmp/from_scwrl_1547500264.pdb > /var/tmp/scwrl_1547500264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1547500264.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1345620114.pdb -s /var/tmp/to_scwrl_1345620114.seq -o /var/tmp/from_scwrl_1345620114.pdb > /var/tmp/scwrl_1345620114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1345620114.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_856182721.pdb -s /var/tmp/to_scwrl_856182721.seq -o /var/tmp/from_scwrl_856182721.pdb > /var/tmp/scwrl_856182721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_856182721.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1492825718.pdb -s /var/tmp/to_scwrl_1492825718.seq -o /var/tmp/from_scwrl_1492825718.pdb > /var/tmp/scwrl_1492825718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492825718.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1630486978.pdb -s /var/tmp/to_scwrl_1630486978.seq -o /var/tmp/from_scwrl_1630486978.pdb > /var/tmp/scwrl_1630486978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1630486978.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1265888199.pdb -s /var/tmp/to_scwrl_1265888199.seq -o /var/tmp/from_scwrl_1265888199.pdb > /var/tmp/scwrl_1265888199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1265888199.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_252864928.pdb -s /var/tmp/to_scwrl_252864928.seq -o /var/tmp/from_scwrl_252864928.pdb > /var/tmp/scwrl_252864928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252864928.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1687254542.pdb -s /var/tmp/to_scwrl_1687254542.seq -o /var/tmp/from_scwrl_1687254542.pdb > /var/tmp/scwrl_1687254542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1687254542.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1617525702.pdb -s /var/tmp/to_scwrl_1617525702.seq -o /var/tmp/from_scwrl_1617525702.pdb > /var/tmp/scwrl_1617525702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617525702.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1052704084.pdb -s /var/tmp/to_scwrl_1052704084.seq -o /var/tmp/from_scwrl_1052704084.pdb > /var/tmp/scwrl_1052704084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1052704084.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_824149379.pdb -s /var/tmp/to_scwrl_824149379.seq -o /var/tmp/from_scwrl_824149379.pdb > /var/tmp/scwrl_824149379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_824149379.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_115013615.pdb -s /var/tmp/to_scwrl_115013615.seq -o /var/tmp/from_scwrl_115013615.pdb > /var/tmp/scwrl_115013615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115013615.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1386549727.pdb -s /var/tmp/to_scwrl_1386549727.seq -o /var/tmp/from_scwrl_1386549727.pdb > /var/tmp/scwrl_1386549727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386549727.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_677894453.pdb -s /var/tmp/to_scwrl_677894453.seq -o /var/tmp/from_scwrl_677894453.pdb > /var/tmp/scwrl_677894453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_677894453.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_271572699.pdb -s /var/tmp/to_scwrl_271572699.seq -o /var/tmp/from_scwrl_271572699.pdb > /var/tmp/scwrl_271572699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_271572699.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_993759043.pdb -s /var/tmp/to_scwrl_993759043.seq -o /var/tmp/from_scwrl_993759043.pdb > /var/tmp/scwrl_993759043.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_993759043.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_632162483.pdb -s /var/tmp/to_scwrl_632162483.seq -o /var/tmp/from_scwrl_632162483.pdb > /var/tmp/scwrl_632162483.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_632162483.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1762816857.pdb -s /var/tmp/to_scwrl_1762816857.seq -o /var/tmp/from_scwrl_1762816857.pdb > /var/tmp/scwrl_1762816857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1762816857.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_127060500.pdb -s /var/tmp/to_scwrl_127060500.seq -o /var/tmp/from_scwrl_127060500.pdb > /var/tmp/scwrl_127060500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_127060500.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1896166371.pdb -s /var/tmp/to_scwrl_1896166371.seq -o /var/tmp/from_scwrl_1896166371.pdb > /var/tmp/scwrl_1896166371.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896166371.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_253421905.pdb -s /var/tmp/to_scwrl_253421905.seq -o /var/tmp/from_scwrl_253421905.pdb > /var/tmp/scwrl_253421905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_253421905.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1320326619.pdb -s /var/tmp/to_scwrl_1320326619.seq -o /var/tmp/from_scwrl_1320326619.pdb > /var/tmp/scwrl_1320326619.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1320326619.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1131680469.pdb -s /var/tmp/to_scwrl_1131680469.seq -o /var/tmp/from_scwrl_1131680469.pdb > /var/tmp/scwrl_1131680469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1131680469.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1527642464.pdb -s /var/tmp/to_scwrl_1527642464.seq -o /var/tmp/from_scwrl_1527642464.pdb > /var/tmp/scwrl_1527642464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527642464.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_581688368.pdb -s /var/tmp/to_scwrl_581688368.seq -o /var/tmp/from_scwrl_581688368.pdb > /var/tmp/scwrl_581688368.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_581688368.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_182850629.pdb -s /var/tmp/to_scwrl_182850629.seq -o /var/tmp/from_scwrl_182850629.pdb > /var/tmp/scwrl_182850629.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_182850629.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0302)T73.O and (T0302)D74.N only 0.000 apart, marking (T0302)D74.N as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1296335658.pdb -s /var/tmp/to_scwrl_1296335658.seq -o /var/tmp/from_scwrl_1296335658.pdb > /var/tmp/scwrl_1296335658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1296335658.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0302)L111.O and (T0302)M112.N only 0.000 apart, marking (T0302)M112.N as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_786039902.pdb -s /var/tmp/to_scwrl_786039902.seq -o /var/tmp/from_scwrl_786039902.pdb > /var/tmp/scwrl_786039902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786039902.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1813464598.pdb -s /var/tmp/to_scwrl_1813464598.seq -o /var/tmp/from_scwrl_1813464598.pdb > /var/tmp/scwrl_1813464598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813464598.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1106742427.pdb -s /var/tmp/to_scwrl_1106742427.seq -o /var/tmp/from_scwrl_1106742427.pdb > /var/tmp/scwrl_1106742427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1106742427.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_172956709.pdb -s /var/tmp/to_scwrl_172956709.seq -o /var/tmp/from_scwrl_172956709.pdb > /var/tmp/scwrl_172956709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172956709.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1213481216.pdb -s /var/tmp/to_scwrl_1213481216.seq -o /var/tmp/from_scwrl_1213481216.pdb > /var/tmp/scwrl_1213481216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1213481216.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_304878895.pdb -s /var/tmp/to_scwrl_304878895.seq -o /var/tmp/from_scwrl_304878895.pdb > /var/tmp/scwrl_304878895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_304878895.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1029139431.pdb -s /var/tmp/to_scwrl_1029139431.seq -o /var/tmp/from_scwrl_1029139431.pdb > /var/tmp/scwrl_1029139431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1029139431.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_558823288.pdb -s /var/tmp/to_scwrl_558823288.seq -o /var/tmp/from_scwrl_558823288.pdb > /var/tmp/scwrl_558823288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_558823288.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1935365873.pdb -s /var/tmp/to_scwrl_1935365873.seq -o /var/tmp/from_scwrl_1935365873.pdb > /var/tmp/scwrl_1935365873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1935365873.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_147543983.pdb -s /var/tmp/to_scwrl_147543983.seq -o /var/tmp/from_scwrl_147543983.pdb > /var/tmp/scwrl_147543983.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_147543983.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_811688217.pdb -s /var/tmp/to_scwrl_811688217.seq -o /var/tmp/from_scwrl_811688217.pdb > /var/tmp/scwrl_811688217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_811688217.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1475136768.pdb -s /var/tmp/to_scwrl_1475136768.seq -o /var/tmp/from_scwrl_1475136768.pdb > /var/tmp/scwrl_1475136768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475136768.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1765069685.pdb -s /var/tmp/to_scwrl_1765069685.seq -o /var/tmp/from_scwrl_1765069685.pdb > /var/tmp/scwrl_1765069685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765069685.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1864392300.pdb -s /var/tmp/to_scwrl_1864392300.seq -o /var/tmp/from_scwrl_1864392300.pdb > /var/tmp/scwrl_1864392300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864392300.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_151802501.pdb -s /var/tmp/to_scwrl_151802501.seq -o /var/tmp/from_scwrl_151802501.pdb > /var/tmp/scwrl_151802501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151802501.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1880083300.pdb -s /var/tmp/to_scwrl_1880083300.seq -o /var/tmp/from_scwrl_1880083300.pdb > /var/tmp/scwrl_1880083300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1880083300.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1103458380.pdb -s /var/tmp/to_scwrl_1103458380.seq -o /var/tmp/from_scwrl_1103458380.pdb > /var/tmp/scwrl_1103458380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1103458380.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_829696954.pdb -s /var/tmp/to_scwrl_829696954.seq -o /var/tmp/from_scwrl_829696954.pdb > /var/tmp/scwrl_829696954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_829696954.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_4172352.pdb -s /var/tmp/to_scwrl_4172352.seq -o /var/tmp/from_scwrl_4172352.pdb > /var/tmp/scwrl_4172352.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_4172352.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2097217423.pdb -s /var/tmp/to_scwrl_2097217423.seq -o /var/tmp/from_scwrl_2097217423.pdb > /var/tmp/scwrl_2097217423.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097217423.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1461859436.pdb -s /var/tmp/to_scwrl_1461859436.seq -o /var/tmp/from_scwrl_1461859436.pdb > /var/tmp/scwrl_1461859436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1461859436.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 27.0589 sec, elapsed time= 266.372 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -184.456 shub_TS1 costs 0 real_cost = -176.942 panther2_TS1-scwrl costs 0 real_cost = -146.315 panther2_TS1 costs 0 real_cost = -145.432 nFOLD_TS5-scwrl costs 0 real_cost = 221.049 nFOLD_TS5 costs 0 real_cost = 277.719 nFOLD_TS4-scwrl costs 0 real_cost = 216.862 nFOLD_TS4 costs 0 real_cost = 288.447 nFOLD_TS3-scwrl costs 0 real_cost = -16.1489 nFOLD_TS3 costs 0 real_cost = 30.3658 nFOLD_TS2-scwrl costs 0 real_cost = -53.1574 nFOLD_TS2 costs 0 real_cost = -53.1516 nFOLD_TS1-scwrl costs 0 real_cost = -206.917 nFOLD_TS1 costs 0 real_cost = -152.232 mGen-3D_TS1-scwrl costs 0 real_cost = -206.917 mGen-3D_TS1 costs 0 real_cost = -152.232 keasar-server_TS5-scwrl costs 0 real_cost = -150.508 keasar-server_TS5 costs 0 real_cost = -132.481 keasar-server_TS4-scwrl costs 0 real_cost = -173.331 keasar-server_TS4 costs 0 real_cost = -175.375 keasar-server_TS3-scwrl costs 0 real_cost = -148.74 keasar-server_TS3 costs 0 real_cost = -139.264 keasar-server_TS2-scwrl costs 0 real_cost = -165.318 keasar-server_TS2 costs 0 real_cost = -160.927 keasar-server_TS1-scwrl costs 0 real_cost = -153.568 keasar-server_TS1 costs 0 real_cost = -153.553 karypis.srv_TS5-scwrl costs 0 real_cost = -124.763 karypis.srv_TS5 costs 0 real_cost = -125.014 karypis.srv_TS4-scwrl costs 0 real_cost = -53.1983 karypis.srv_TS4 costs 0 real_cost = -53.2006 karypis.srv_TS3-scwrl costs 0 real_cost = -148.246 karypis.srv_TS3 costs 0 real_cost = -156.67 karypis.srv_TS2-scwrl costs 0 real_cost = -202.009 karypis.srv_TS2 costs 0 real_cost = -214.758 karypis.srv_TS1-scwrl costs 0 real_cost = -146.05 karypis.srv_TS1 costs 0 real_cost = -152.392 karypis.srv.4_TS5-scwrl costs 0 real_cost = 228.702 karypis.srv.4_TS5 costs 0 real_cost = 229.043 karypis.srv.4_TS4-scwrl costs 0 real_cost = 248.841 karypis.srv.4_TS4 costs 0 real_cost = 248.841 karypis.srv.4_TS3-scwrl costs 0 real_cost = 305.495 karypis.srv.4_TS3 costs 0 real_cost = 302.611 karypis.srv.4_TS2-scwrl costs 0 real_cost = 310.76 karypis.srv.4_TS2 costs 0 real_cost = 310.763 karypis.srv.4_TS1-scwrl costs 0 real_cost = 197.116 karypis.srv.4_TS1 costs 0 real_cost = 197.116 karypis.srv.2_TS5-scwrl costs 0 real_cost = -220.695 karypis.srv.2_TS5 costs 0 real_cost = -220.695 karypis.srv.2_TS4-scwrl costs 0 real_cost = -222.587 karypis.srv.2_TS4 costs 0 real_cost = -222.572 karypis.srv.2_TS3-scwrl costs 0 real_cost = -148.654 karypis.srv.2_TS3 costs 0 real_cost = -148.654 karypis.srv.2_TS2-scwrl costs 0 real_cost = -210.437 karypis.srv.2_TS2 costs 0 real_cost = -210.437 karypis.srv.2_TS1-scwrl costs 0 real_cost = -147.552 karypis.srv.2_TS1 costs 0 real_cost = -147.552 gtg_AL5-scwrl costs 0 real_cost = -132.97 gtg_AL5 costs 0 real_cost = -58.2214 gtg_AL4-scwrl costs 0 real_cost = 69.123 gtg_AL4 costs 0 real_cost = 173.969 gtg_AL3-scwrl costs 0 real_cost = -209.771 gtg_AL3 costs 0 real_cost = -120.308 gtg_AL2-scwrl costs 0 real_cost = -200.052 gtg_AL2 costs 0 real_cost = -102.405 gtg_AL1-scwrl costs 0 real_cost = -191.595 gtg_AL1 costs 0 real_cost = -93.4008 forecast-s_AL5-scwrl costs 0 real_cost = 89.7822 forecast-s_AL5 costs 0 real_cost = 136.713 forecast-s_AL4-scwrl costs 0 real_cost = 14.7807 forecast-s_AL4 costs 0 real_cost = 14.7807 forecast-s_AL3-scwrl costs 0 real_cost = -90.8281 forecast-s_AL3 costs 0 real_cost = -52.1959 forecast-s_AL2-scwrl costs 0 real_cost = -123.667 forecast-s_AL2 costs 0 real_cost = -46.1848 forecast-s_AL1-scwrl costs 0 real_cost = -206.917 forecast-s_AL1 costs 0 real_cost = -128.268 beautshotbase_TS1-scwrl costs 0 real_cost = -183.297 beautshotbase_TS1 costs 0 real_cost = -193.163 beautshot_TS1-scwrl costs 0 real_cost = -191.71 beautshot_TS1 costs 0 real_cost = -187.921 Zhang-Server_TS5-scwrl costs 0 real_cost = -223.987 Zhang-Server_TS5 costs 0 real_cost = -226.675 Zhang-Server_TS4-scwrl costs 0 real_cost = -229.127 Zhang-Server_TS4 costs 0 real_cost = -230.448 Zhang-Server_TS3-scwrl costs 0 real_cost = -231.865 Zhang-Server_TS3 costs 0 real_cost = -233.869 Zhang-Server_TS2-scwrl costs 0 real_cost = -231.423 Zhang-Server_TS2 costs 0 real_cost = -235.239 Zhang-Server_TS1-scwrl costs 0 real_cost = -231.728 Zhang-Server_TS1 costs 0 real_cost = -231.362 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -127.419 UNI-EID_sfst_AL5 costs 0 real_cost = -39.2884 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -206.917 UNI-EID_sfst_AL4 costs 0 real_cost = -128.268 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -97.8623 UNI-EID_sfst_AL3 costs 0 real_cost = -97.8623 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -200.873 UNI-EID_sfst_AL2 costs 0 real_cost = -106.383 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -189.941 UNI-EID_sfst_AL1 costs 0 real_cost = -96.851 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -143.793 UNI-EID_expm_TS1 costs 0 real_cost = -143.774 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -127.419 UNI-EID_bnmx_TS5 costs 0 real_cost = -39.2884 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -206.917 UNI-EID_bnmx_TS4 costs 0 real_cost = -128.268 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -97.8623 UNI-EID_bnmx_TS3 costs 0 real_cost = -97.8623 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -200.873 UNI-EID_bnmx_TS2 costs 0 real_cost = -106.383 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -189.941 UNI-EID_bnmx_TS1 costs 0 real_cost = -96.851 SPARKS2_TS5-scwrl costs 0 real_cost = -81.1938 SPARKS2_TS5 costs 0 real_cost = -85.8849 SPARKS2_TS4-scwrl costs 0 real_cost = 65.8879 SPARKS2_TS4 costs 0 real_cost = 62.1905 SPARKS2_TS3-scwrl costs 0 real_cost = -153.138 SPARKS2_TS3 costs 0 real_cost = -155.062 SPARKS2_TS2-scwrl costs 0 real_cost = -202.541 SPARKS2_TS2 costs 0 real_cost = -204.566 SPARKS2_TS1-scwrl costs 0 real_cost = -223.86 SPARKS2_TS1 costs 0 real_cost = -231.406 SP4_TS5-scwrl costs 0 real_cost = 65.8879 SP4_TS5 costs 0 real_cost = 62.1905 SP4_TS4-scwrl costs 0 real_cost = -127.417 SP4_TS4 costs 0 real_cost = -127.103 SP4_TS3-scwrl costs 0 real_cost = -153.138 SP4_TS3 costs 0 real_cost = -155.062 SP4_TS2-scwrl costs 0 real_cost = -202.458 SP4_TS2 costs 0 real_cost = -203.792 SP4_TS1-scwrl costs 0 real_cost = -223.86 SP4_TS1 costs 0 real_cost = -231.406 SP3_TS5-scwrl costs 0 real_cost = 65.8879 SP3_TS5 costs 0 real_cost = 62.1905 SP3_TS4-scwrl costs 0 real_cost = -139.653 SP3_TS4 costs 0 real_cost = -136.642 SP3_TS3-scwrl costs 0 real_cost = -153.138 SP3_TS3 costs 0 real_cost = -155.062 SP3_TS2-scwrl costs 0 real_cost = -206.454 SP3_TS2 costs 0 real_cost = -199.49 SP3_TS1-scwrl costs 0 real_cost = -223.86 SP3_TS1 costs 0 real_cost = -231.406 SAM_T06_server_TS5-scwrl costs 0 real_cost = -149.921 SAM_T06_server_TS5 costs 0 real_cost = -151.428 SAM_T06_server_TS4-scwrl costs 0 real_cost = 109.265 SAM_T06_server_TS4 costs 0 real_cost = 89.7193 SAM_T06_server_TS3-scwrl costs 0 real_cost = -174.817 SAM_T06_server_TS3 costs 0 real_cost = -192.447 SAM_T06_server_TS2-scwrl costs 0 real_cost = -196.187 SAM_T06_server_TS2 costs 0 real_cost = -202.127 SAM_T06_server_TS1-scwrl costs 0 real_cost = -198.417 SAM_T06_server_TS1 costs 0 real_cost = -199.763 SAM-T99_AL5-scwrl costs 0 real_cost = -212.272 SAM-T99_AL5 costs 0 real_cost = -118.358 SAM-T99_AL4-scwrl costs 0 real_cost = -209.083 SAM-T99_AL4 costs 0 real_cost = -114.97 SAM-T99_AL3-scwrl costs 0 real_cost = -139.422 SAM-T99_AL3 costs 0 real_cost = -47.0658 SAM-T99_AL2-scwrl costs 0 real_cost = -180.103 SAM-T99_AL2 costs 0 real_cost = -100.492 SAM-T99_AL1-scwrl costs 0 real_cost = -188.109 SAM-T99_AL1 costs 0 real_cost = -96.0894 SAM-T02_AL5-scwrl costs 0 real_cost = -41.5716 SAM-T02_AL5 costs 0 real_cost = -41.5716 SAM-T02_AL4-scwrl costs 0 real_cost = -84.7671 SAM-T02_AL4 costs 0 real_cost = -84.7671 SAM-T02_AL3-scwrl costs 0 real_cost = -189.17 SAM-T02_AL3 costs 0 real_cost = -105.535 SAM-T02_AL2-scwrl costs 0 real_cost = 68.7043 SAM-T02_AL2 costs 0 real_cost = 172.381 SAM-T02_AL1-scwrl costs 0 real_cost = -189.546 SAM-T02_AL1 costs 0 real_cost = -105.26 ROKKY_TS5-scwrl costs 0 real_cost = -219.345 ROKKY_TS5 costs 0 real_cost = -217.758 ROKKY_TS4-scwrl costs 0 real_cost = -174.721 ROKKY_TS4 costs 0 real_cost = -174.126 ROKKY_TS3-scwrl costs 0 real_cost = -125.068 ROKKY_TS3 costs 0 real_cost = -118.579 ROKKY_TS2-scwrl costs 0 real_cost = -119.281 ROKKY_TS2 costs 0 real_cost = -115.073 ROKKY_TS1-scwrl costs 0 real_cost = -202.029 ROKKY_TS1 costs 0 real_cost = -195.666 ROBETTA_TS5-scwrl costs 0 real_cost = -142.402 ROBETTA_TS5 costs 0 real_cost = -135.815 ROBETTA_TS4-scwrl costs 0 real_cost = -208.868 ROBETTA_TS4 costs 0 real_cost = -211.665 ROBETTA_TS3-scwrl costs 0 real_cost = -212.068 ROBETTA_TS3 costs 0 real_cost = -212.776 ROBETTA_TS2-scwrl costs 0 real_cost = -194.793 ROBETTA_TS2 costs 0 real_cost = -195.166 ROBETTA_TS1-scwrl costs 0 real_cost = -209.111 ROBETTA_TS1 costs 0 real_cost = -211.952 RAPTOR_TS5-scwrl costs 0 real_cost = -221.373 RAPTOR_TS5 costs 0 real_cost = -225.774 RAPTOR_TS4-scwrl costs 0 real_cost = -193.782 RAPTOR_TS4 costs 0 real_cost = -194.498 RAPTOR_TS3-scwrl costs 0 real_cost = -213.849 RAPTOR_TS3 costs 0 real_cost = -214.682 RAPTOR_TS2-scwrl costs 0 real_cost = -207.859 RAPTOR_TS2 costs 0 real_cost = -210.507 RAPTOR_TS1-scwrl costs 0 real_cost = -188.568 RAPTOR_TS1 costs 0 real_cost = -182.29 RAPTORESS_TS5-scwrl costs 0 real_cost = -212.968 RAPTORESS_TS5 costs 0 real_cost = -214.928 RAPTORESS_TS4-scwrl costs 0 real_cost = -187.722 RAPTORESS_TS4 costs 0 real_cost = -187.43 RAPTORESS_TS3-scwrl costs 0 real_cost = -204.237 RAPTORESS_TS3 costs 0 real_cost = -210.623 RAPTORESS_TS2-scwrl costs 0 real_cost = -209.512 RAPTORESS_TS2 costs 0 real_cost = -213.545 RAPTORESS_TS1-scwrl costs 0 real_cost = -196.571 RAPTORESS_TS1 costs 0 real_cost = -192.492 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -226.136 RAPTOR-ACE_TS5 costs 0 real_cost = -233.774 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -222.661 RAPTOR-ACE_TS4 costs 0 real_cost = -228.593 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -223.86 RAPTOR-ACE_TS3 costs 0 real_cost = -231.406 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -132.082 RAPTOR-ACE_TS2 costs 0 real_cost = -134.783 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -222.661 RAPTOR-ACE_TS1 costs 0 real_cost = -228.593 Pmodeller6_TS5-scwrl costs 0 real_cost = -208.443 Pmodeller6_TS5 costs 0 real_cost = -218.902 Pmodeller6_TS4-scwrl costs 0 real_cost = -208.443 Pmodeller6_TS4 costs 0 real_cost = -218.902 Pmodeller6_TS3-scwrl costs 0 real_cost = -208.443 Pmodeller6_TS3 costs 0 real_cost = -218.902 Pmodeller6_TS2-scwrl costs 0 real_cost = -210.002 Pmodeller6_TS2 costs 0 real_cost = -210.391 Pmodeller6_TS1-scwrl costs 0 real_cost = -196.984 Pmodeller6_TS1 costs 0 real_cost = -208.059 Phyre-2_TS5-scwrl costs 0 real_cost = -210.26 Phyre-2_TS5 costs 0 real_cost = -210.524 Phyre-2_TS4-scwrl costs 0 real_cost = -216.549 Phyre-2_TS4 costs 0 real_cost = -216.053 Phyre-2_TS3-scwrl costs 0 real_cost = -210.26 Phyre-2_TS3 costs 0 real_cost = -210.524 Phyre-2_TS2-scwrl costs 0 real_cost = -216.549 Phyre-2_TS2 costs 0 real_cost = -215.448 Phyre-2_TS1-scwrl costs 0 real_cost = -216.549 Phyre-2_TS1 costs 0 real_cost = -215.28 Phyre-1_TS1-scwrl costs 0 real_cost = -188.109 Phyre-1_TS1 costs 0 real_cost = -188.338 Pcons6_TS5-scwrl costs 0 real_cost = -202.503 Pcons6_TS5 costs 0 real_cost = -209.789 Pcons6_TS4-scwrl costs 0 real_cost = -210.002 Pcons6_TS4 costs 0 real_cost = -210.391 Pcons6_TS3-scwrl costs 0 real_cost = -205.152 Pcons6_TS3 costs 0 real_cost = -213.815 Pcons6_TS2-scwrl costs 0 real_cost = -208.443 Pcons6_TS2 costs 0 real_cost = -218.902 Pcons6_TS1-scwrl costs 0 real_cost = -208.443 Pcons6_TS1 costs 0 real_cost = -218.902 PROTINFO_TS5-scwrl costs 0 real_cost = -226.338 PROTINFO_TS5 costs 0 real_cost = -226.197 PROTINFO_TS4-scwrl costs 0 real_cost = -202.778 PROTINFO_TS4 costs 0 real_cost = -199.945 PROTINFO_TS3-scwrl costs 0 real_cost = -223.256 PROTINFO_TS3 costs 0 real_cost = -222.458 PROTINFO_TS2-scwrl costs 0 real_cost = -192.941 PROTINFO_TS2 costs 0 real_cost = -196.209 PROTINFO_TS1-scwrl costs 0 real_cost = -216.94 PROTINFO_TS1 costs 0 real_cost = -226.499 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -212.303 PROTINFO-AB_TS5 costs 0 real_cost = -205.028 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -215.472 PROTINFO-AB_TS4 costs 0 real_cost = -220.056 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -219.365 PROTINFO-AB_TS3 costs 0 real_cost = -212.458 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -226.338 PROTINFO-AB_TS2 costs 0 real_cost = -226.197 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -223.256 PROTINFO-AB_TS1 costs 0 real_cost = -222.458 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -179.502 NN_PUT_lab_TS1 costs 0 real_cost = -173.101 MetaTasser_TS1-scwrl costs 0 real_cost = -207.478 MetaTasser_TS1 costs 0 real_cost = -205.784 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -98.7456 Ma-OPUS-server_TS5 costs 0 real_cost = -109.21 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -47.4775 Ma-OPUS-server_TS4 costs 0 real_cost = -40.0576 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -151.535 Ma-OPUS-server_TS3 costs 0 real_cost = -149.65 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -224.653 Ma-OPUS-server_TS2 costs 0 real_cost = -226.333 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -205.879 Ma-OPUS-server_TS1 costs 0 real_cost = -209.889 MIG_FROST_AL1-scwrl costs 0 real_cost = -199.096 MIG_FROST_AL1 costs 0 real_cost = -105.547 LOOPP_TS5-scwrl costs 0 real_cost = -189.545 LOOPP_TS5 costs 0 real_cost = -188.601 LOOPP_TS4-scwrl costs 0 real_cost = -117.967 LOOPP_TS4 costs 0 real_cost = -121.394 LOOPP_TS3-scwrl costs 0 real_cost = -178.41 LOOPP_TS3 costs 0 real_cost = -180.911 LOOPP_TS2-scwrl costs 0 real_cost = -198.77 LOOPP_TS2 costs 0 real_cost = -198.085 LOOPP_TS1-scwrl costs 0 real_cost = -179.502 LOOPP_TS1 costs 0 real_cost = -173.101 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -108.937 Huber-Torda-Server_TS5 costs 0 real_cost = -108.945 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -127.281 Huber-Torda-Server_TS4 costs 0 real_cost = -60.9615 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -206.917 Huber-Torda-Server_TS3 costs 0 real_cost = -152.232 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -122.236 Huber-Torda-Server_TS2 costs 0 real_cost = -122.256 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -124.852 Huber-Torda-Server_TS1 costs 0 real_cost = -124.834 HHpred3_TS1-scwrl costs 0 real_cost = -233.681 HHpred3_TS1 costs 0 real_cost = -232.877 HHpred2_TS1-scwrl costs 0 real_cost = -233.681 HHpred2_TS1 costs 0 real_cost = -232.877 HHpred1_TS1-scwrl costs 0 real_cost = -230.926 HHpred1_TS1 costs 0 real_cost = -237.297 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -135.121 GeneSilicoMetaServer_TS5 costs 0 real_cost = -138.883 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -166.288 GeneSilicoMetaServer_TS4 costs 0 real_cost = -173.617 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -212.753 GeneSilicoMetaServer_TS3 costs 0 real_cost = -217.693 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -220.374 GeneSilicoMetaServer_TS2 costs 0 real_cost = -219.993 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -220.374 GeneSilicoMetaServer_TS1 costs 0 real_cost = -219.993 Frankenstein_TS4-scwrl costs 0 real_cost = -214.364 Frankenstein_TS4 costs 0 real_cost = -215.234 FUNCTION_TS5-scwrl costs 0 real_cost = -215.255 FUNCTION_TS5 costs 0 real_cost = -215.097 FUNCTION_TS4-scwrl costs 0 real_cost = -188.305 FUNCTION_TS4 costs 0 real_cost = -184.01 FUNCTION_TS3-scwrl costs 0 real_cost = -183.811 FUNCTION_TS3 costs 0 real_cost = -187.79 FUNCTION_TS2-scwrl costs 0 real_cost = -183.18 FUNCTION_TS2 costs 0 real_cost = -185.841 FUNCTION_TS1-scwrl costs 0 real_cost = -192.726 FUNCTION_TS1 costs 0 real_cost = -187.472 FUGUE_AL5-scwrl costs 0 real_cost = 223.089 FUGUE_AL5 costs 0 real_cost = 323.527 FUGUE_AL4-scwrl costs 0 real_cost = 44.5128 FUGUE_AL4 costs 0 real_cost = 122.678 FUGUE_AL3-scwrl costs 0 real_cost = -65.9701 FUGUE_AL3 costs 0 real_cost = 36.8224 FUGUE_AL2-scwrl costs 0 real_cost = -197.188 FUGUE_AL2 costs 0 real_cost = -125.36 FUGUE_AL1-scwrl costs 0 real_cost = -206.917 FUGUE_AL1 costs 0 real_cost = -128.268 FUGMOD_TS5-scwrl costs 0 real_cost = 215.099 FUGMOD_TS5 costs 0 real_cost = 216.017 FUGMOD_TS4-scwrl costs 0 real_cost = 30.3851 FUGMOD_TS4 costs 0 real_cost = 36.7573 FUGMOD_TS3-scwrl costs 0 real_cost = -27.4557 FUGMOD_TS3 costs 0 real_cost = -27.2544 FUGMOD_TS2-scwrl costs 0 real_cost = -226.691 FUGMOD_TS2 costs 0 real_cost = -230.7 FUGMOD_TS1-scwrl costs 0 real_cost = -207.042 FUGMOD_TS1 costs 0 real_cost = -226.489 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 242.139 FPSOLVER-SERVER_TS5 costs 0 real_cost = 241.672 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 248.962 FPSOLVER-SERVER_TS4 costs 0 real_cost = 249.758 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 244.839 FPSOLVER-SERVER_TS3 costs 0 real_cost = 246.674 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 262.425 FPSOLVER-SERVER_TS2 costs 0 real_cost = 263.589 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 221.81 FPSOLVER-SERVER_TS1 costs 0 real_cost = 225.429 FORTE2_AL5-scwrl costs 0 real_cost = 68.3875 FORTE2_AL5 costs 0 real_cost = 149.645 FORTE2_AL4-scwrl costs 0 real_cost = -164.373 FORTE2_AL4 costs 0 real_cost = -83.0087 FORTE2_AL3-scwrl costs 0 real_cost = 4.07458 FORTE2_AL3 costs 0 real_cost = 4.07458 FORTE2_AL2-scwrl costs 0 real_cost = -201.017 FORTE2_AL2 costs 0 real_cost = -104.82 FORTE2_AL1-scwrl costs 0 real_cost = -206.917 FORTE2_AL1 costs 0 real_cost = -128.268 FORTE1_AL5-scwrl costs 0 real_cost = 323.204 FORTE1_AL5 costs 0 real_cost = 323.204 FORTE1_AL4-scwrl costs 0 real_cost = -113.432 FORTE1_AL4 costs 0 real_cost = -35.2702 FORTE1_AL3-scwrl costs 0 real_cost = 24.6379 FORTE1_AL3 costs 0 real_cost = 24.6379 FORTE1_AL2-scwrl costs 0 real_cost = -201.017 FORTE1_AL2 costs 0 real_cost = -104.82 FORTE1_AL1-scwrl costs 0 real_cost = -206.917 FORTE1_AL1 costs 0 real_cost = -128.268 FOLDpro_TS5-scwrl costs 0 real_cost = 65.5195 FOLDpro_TS5 costs 0 real_cost = 71.5599 FOLDpro_TS4-scwrl costs 0 real_cost = -186.717 FOLDpro_TS4 costs 0 real_cost = -181.041 FOLDpro_TS3-scwrl costs 0 real_cost = 62.9857 FOLDpro_TS3 costs 0 real_cost = 64.6381 FOLDpro_TS2-scwrl costs 0 real_cost = -235.584 FOLDpro_TS2 costs 0 real_cost = -242.357 FOLDpro_TS1-scwrl costs 0 real_cost = -230.534 FOLDpro_TS1 costs 0 real_cost = -231.357 FAMS_TS5-scwrl costs 0 real_cost = -210.974 FAMS_TS5 costs 0 real_cost = -207.482 FAMS_TS4-scwrl costs 0 real_cost = -183.18 FAMS_TS4 costs 0 real_cost = -185.841 FAMS_TS3-scwrl costs 0 real_cost = -180.154 FAMS_TS3 costs 0 real_cost = -182.519 FAMS_TS2-scwrl costs 0 real_cost = -203.763 FAMS_TS2 costs 0 real_cost = -189.567 FAMS_TS1-scwrl costs 0 real_cost = -215.3 FAMS_TS1 costs 0 real_cost = -215.347 FAMSD_TS5-scwrl costs 0 real_cost = -142.466 FAMSD_TS5 costs 0 real_cost = -131.965 FAMSD_TS4-scwrl costs 0 real_cost = -188.426 FAMSD_TS4 costs 0 real_cost = -191.528 FAMSD_TS3-scwrl costs 0 real_cost = -168.524 FAMSD_TS3 costs 0 real_cost = -165.218 FAMSD_TS2-scwrl costs 0 real_cost = -195.167 FAMSD_TS2 costs 0 real_cost = -183.123 FAMSD_TS1-scwrl costs 0 real_cost = -191.554 FAMSD_TS1 costs 0 real_cost = -195.906 Distill_TS5-scwrl costs 0 real_cost = 233.753 Distill_TS4-scwrl costs 0 real_cost = 230.932 Distill_TS3-scwrl costs 0 real_cost = 231.207 Distill_TS2-scwrl costs 0 real_cost = 239.46 Distill_TS1-scwrl costs 0 real_cost = 225.752 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -196.666 CaspIta-FOX_TS5 costs 0 real_cost = -195.136 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -171.186 CaspIta-FOX_TS4 costs 0 real_cost = -182.972 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -177.224 CaspIta-FOX_TS3 costs 0 real_cost = -171.307 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -194.831 CaspIta-FOX_TS2 costs 0 real_cost = -194.065 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -148.097 CaspIta-FOX_TS1 costs 0 real_cost = -150.413 CPHmodels_TS1-scwrl costs 0 real_cost = -163.689 CPHmodels_TS1 costs 0 real_cost = -175.282 CIRCLE_TS5-scwrl costs 0 real_cost = -180.154 CIRCLE_TS5 costs 0 real_cost = -182.519 CIRCLE_TS4-scwrl costs 0 real_cost = -203.763 CIRCLE_TS4 costs 0 real_cost = -189.567 CIRCLE_TS3-scwrl costs 0 real_cost = -195.167 CIRCLE_TS3 costs 0 real_cost = -183.123 CIRCLE_TS2-scwrl costs 0 real_cost = -210.974 CIRCLE_TS2 costs 0 real_cost = -207.482 CIRCLE_TS1-scwrl costs 0 real_cost = -208.501 CIRCLE_TS1 costs 0 real_cost = -209.108 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -183.092 Bilab-ENABLE_TS5 costs 0 real_cost = -183.095 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -197.264 Bilab-ENABLE_TS4 costs 0 real_cost = -197.264 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -210.298 Bilab-ENABLE_TS3 costs 0 real_cost = -210.623 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -205.982 Bilab-ENABLE_TS2 costs 0 real_cost = -205.263 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -218.357 Bilab-ENABLE_TS1 costs 0 real_cost = -218.357 BayesHH_TS1-scwrl costs 0 real_cost = -220.87 BayesHH_TS1 costs 0 real_cost = -218.173 ABIpro_TS5-scwrl costs 0 real_cost = 186.849 ABIpro_TS5 costs 0 real_cost = 186.849 ABIpro_TS4-scwrl costs 0 real_cost = 152.094 ABIpro_TS4 costs 0 real_cost = 152.101 ABIpro_TS3-scwrl costs 0 real_cost = 180.724 ABIpro_TS3 costs 0 real_cost = 180.724 ABIpro_TS2-scwrl costs 0 real_cost = 192.235 ABIpro_TS2 costs 0 real_cost = 192.238 ABIpro_TS1-scwrl costs 0 real_cost = 181.077 ABIpro_TS1 costs 0 real_cost = 181.493 3Dpro_TS5-scwrl costs 0 real_cost = -153.099 3Dpro_TS5 costs 0 real_cost = -153.1 3Dpro_TS4-scwrl costs 0 real_cost = 82.1107 3Dpro_TS4 costs 0 real_cost = 74.858 3Dpro_TS3-scwrl costs 0 real_cost = 47.4183 3Dpro_TS3 costs 0 real_cost = 47.4544 3Dpro_TS2-scwrl costs 0 real_cost = -226.265 3Dpro_TS2 costs 0 real_cost = -223.308 3Dpro_TS1-scwrl costs 0 real_cost = -228.841 3Dpro_TS1 costs 0 real_cost = -228.161 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -147.949 3D-JIGSAW_TS5 costs 0 real_cost = -135.332 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -151.306 3D-JIGSAW_TS4 costs 0 real_cost = -145.804 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -207.911 3D-JIGSAW_TS3 costs 0 real_cost = -210.355 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -175.621 3D-JIGSAW_TS2 costs 0 real_cost = -166.092 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -166.112 3D-JIGSAW_TS1 costs 0 real_cost = -176.81 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -184.031 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -191.531 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -170.098 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -179.157 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -178.746 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -191.99 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -182.975 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -199.245 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -161.405 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -173.742 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -149.825 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -160.607 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -201.439 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -201.536 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -165.784 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -165.77 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -120.823 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -130.05 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -154.398 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -154.399 T0302.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -216.705 T0302.try2-opt2.pdb.gz costs 0 real_cost = -217.099 T0302.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -216.274 T0302.try2-opt1.pdb.gz costs 0 real_cost = -217.967 T0302.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -214.792 T0302.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -202.23 T0302.try1-opt2.pdb.gz costs 0 real_cost = -201.344 T0302.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -201.119 T0302.try1-opt1.pdb.gz costs 0 real_cost = -194.31 T0302.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -194.349 ../model5.ts-submitted costs 0 real_cost = 86.1864 ../model4.ts-submitted costs 0 real_cost = -189.272 ../model3.ts-submitted costs 0 real_cost = -196.855 ../model2.ts-submitted costs 0 real_cost = -201.165 ../model1.ts-submitted costs 0 real_cost = -217.75 align5 costs 0 real_cost = -13.0461 align4 costs 0 real_cost = -84.1386 align3 costs 0 real_cost = 86.0755 align2 costs 0 real_cost = -193.983 align1 costs 0 real_cost = -196.967 T0302.try1-opt2.pdb costs 0 real_cost = -201.344 model5-scwrl costs 0 real_cost = 99.0686 model5.ts-submitted costs 0 real_cost = 86.1864 model4-scwrl costs 0 real_cost = -174.272 model4.ts-submitted costs 0 real_cost = -189.272 model3-scwrl costs 0 real_cost = -192.655 model3.ts-submitted costs 0 real_cost = -196.855 model2-scwrl costs 0 real_cost = -200.677 model2.ts-submitted costs 0 real_cost = -201.165 model1-scwrl costs 0 real_cost = -215.026 model1.ts-submitted costs 0 real_cost = -217.75 2jm5A costs 0 real_cost = -895 # command:CPU_time= 378.075 sec, elapsed time= 617.8 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0302/ -e s/START_COL/1/ \ -e s/REAL_PDB/2jm5A/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174936325 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 5.80512 sec, elapsed time= 5.85316 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.88111 sec, elapsed time= 5.94396 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0302 numbered 1 through 132 Created new target T0302 from T0302.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0302_1.real.pdb looking for model 1 # choosing archetypes in rotamer library # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 9.98348 sec, elapsed time= 10.0612 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -79.1339 # GDT_score(maxd=8,maxw=2.9)= -84.8079 # GDT_score(maxd=8,maxw=3.2)= -80.3444 # GDT_score(maxd=8,maxw=3.5)= -75.8902 # GDT_score(maxd=10,maxw=3.8)= -78.2221 # GDT_score(maxd=10,maxw=4)= -75.444 # GDT_score(maxd=10,maxw=4.2)= -72.7939 # GDT_score(maxd=12,maxw=4.3)= -76.4735 # GDT_score(maxd=12,maxw=4.5)= -73.931 # GDT_score(maxd=12,maxw=4.7)= -71.4438 # GDT_score(maxd=14,maxw=5.2)= -69.5192 # GDT_score(maxd=14,maxw=5.5)= -66.2654 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.5600000e+03 rmsd (weighted)= 2.3314103e+00 (unweighted)= 2.1731136e+01 superimposing iter= 1 total_weight= 3.1835917e+03 rmsd (weighted)= 1.3122177e+00 (unweighted)= 2.1735963e+01 superimposing iter= 2 total_weight= 1.3008093e+03 rmsd (weighted)= 1.1752641e+00 (unweighted)= 2.1738322e+01 superimposing iter= 3 total_weight= 1.1025040e+03 rmsd (weighted)= 1.1451827e+00 (unweighted)= 2.1740610e+01 superimposing iter= 4 total_weight= 1.0714636e+03 rmsd (weighted)= 1.1322282e+00 (unweighted)= 2.1742940e+01 superimposing iter= 5 total_weight= 1.0586478e+03 rmsd (weighted)= 1.1261312e+00 (unweighted)= 2.1745217e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1002181367.pdb -s /var/tmp/to_scwrl_1002181367.seq -o /var/tmp/from_scwrl_1002181367.pdb > /var/tmp/scwrl_1002181367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1002181367.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -79.1339 # GDT_score(maxd=8,maxw=2.9)= -84.8722 # GDT_score(maxd=8,maxw=3.2)= -80.6662 # GDT_score(maxd=8,maxw=3.5)= -76.3674 # GDT_score(maxd=10,maxw=3.8)= -78.6599 # GDT_score(maxd=10,maxw=4)= -75.931 # GDT_score(maxd=10,maxw=4.2)= -73.2438 # GDT_score(maxd=12,maxw=4.3)= -76.9333 # GDT_score(maxd=12,maxw=4.5)= -74.3377 # GDT_score(maxd=12,maxw=4.7)= -71.7942 # GDT_score(maxd=14,maxw=5.2)= -69.8593 # GDT_score(maxd=14,maxw=5.5)= -66.6713 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_274926225.pdb -s /var/tmp/to_scwrl_274926225.seq -o /var/tmp/from_scwrl_274926225.pdb > /var/tmp/scwrl_274926225.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_274926225.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.976378 # GDT_score = -76.378 # GDT_score(maxd=8,maxw=2.9)= -80.921 # GDT_score(maxd=8,maxw=3.2)= -77.1786 # GDT_score(maxd=8,maxw=3.5)= -73.3575 # GDT_score(maxd=10,maxw=3.8)= -75.6674 # GDT_score(maxd=10,maxw=4)= -73.2748 # GDT_score(maxd=10,maxw=4.2)= -70.9008 # GDT_score(maxd=12,maxw=4.3)= -74.3526 # GDT_score(maxd=12,maxw=4.5)= -72.0494 # GDT_score(maxd=12,maxw=4.7)= -69.7939 # GDT_score(maxd=14,maxw=5.2)= -68.103 # GDT_score(maxd=14,maxw=5.5)= -65.1098 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_788640190.pdb -s /var/tmp/to_scwrl_788640190.seq -o /var/tmp/from_scwrl_788640190.pdb > /var/tmp/scwrl_788640190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_788640190.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.976378 # GDT_score = -76.5748 # GDT_score(maxd=8,maxw=2.9)= -80.7221 # GDT_score(maxd=8,maxw=3.2)= -76.7297 # GDT_score(maxd=8,maxw=3.5)= -72.7174 # GDT_score(maxd=10,maxw=3.8)= -75.0892 # GDT_score(maxd=10,maxw=4)= -72.6499 # GDT_score(maxd=10,maxw=4.2)= -70.2961 # GDT_score(maxd=12,maxw=4.3)= -73.7612 # GDT_score(maxd=12,maxw=4.5)= -71.4951 # GDT_score(maxd=12,maxw=4.7)= -69.2798 # GDT_score(maxd=14,maxw=5.2)= -67.5314 # GDT_score(maxd=14,maxw=5.5)= -64.4308 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1551172215.pdb -s /var/tmp/to_scwrl_1551172215.seq -o /var/tmp/from_scwrl_1551172215.pdb > /var/tmp/scwrl_1551172215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1551172215.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.952756 # GDT_score = -52.1654 # GDT_score(maxd=8,maxw=2.9)= -55.9626 # GDT_score(maxd=8,maxw=3.2)= -52.9508 # GDT_score(maxd=8,maxw=3.5)= -49.8399 # GDT_score(maxd=10,maxw=3.8)= -51.8012 # GDT_score(maxd=10,maxw=4)= -49.9076 # GDT_score(maxd=10,maxw=4.2)= -48.081 # GDT_score(maxd=12,maxw=4.3)= -51.0152 # GDT_score(maxd=12,maxw=4.5)= -49.2395 # GDT_score(maxd=12,maxw=4.7)= -47.5501 # GDT_score(maxd=14,maxw=5.2)= -46.593 # GDT_score(maxd=14,maxw=5.5)= -44.4381 # command:# request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_545351277.pdb -s /var/tmp/to_scwrl_545351277.seq -o /var/tmp/from_scwrl_545351277.pdb > /var/tmp/scwrl_545351277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_545351277.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0302.try1-opt2.pdb looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -79.1339 # GDT_score(maxd=8,maxw=2.9)= -84.8658 # GDT_score(maxd=8,maxw=3.2)= -80.6568 # GDT_score(maxd=8,maxw=3.5)= -76.3571 # GDT_score(maxd=10,maxw=3.8)= -78.6485 # GDT_score(maxd=10,maxw=4)= -75.9145 # GDT_score(maxd=10,maxw=4.2)= -73.2261 # GDT_score(maxd=12,maxw=4.3)= -76.918 # GDT_score(maxd=12,maxw=4.5)= -74.3254 # GDT_score(maxd=12,maxw=4.7)= -71.803 # GDT_score(maxd=14,maxw=5.2)= -69.883 # GDT_score(maxd=14,maxw=5.5)= -66.7005 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.5600000e+03 rmsd (weighted)= 2.3484875e+00 (unweighted)= 2.2729475e+01 superimposing iter= 1 total_weight= 3.2919063e+03 rmsd (weighted)= 1.2996234e+00 (unweighted)= 2.2731400e+01 superimposing iter= 2 total_weight= 1.3062189e+03 rmsd (weighted)= 1.1619752e+00 (unweighted)= 2.2731553e+01 superimposing iter= 3 total_weight= 1.1002826e+03 rmsd (weighted)= 1.1331334e+00 (unweighted)= 2.2731476e+01 superimposing iter= 4 total_weight= 1.0781613e+03 rmsd (weighted)= 1.1163569e+00 (unweighted)= 2.2731901e+01 superimposing iter= 5 total_weight= 1.0685002e+03 rmsd (weighted)= 1.1046802e+00 (unweighted)= 2.2732800e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0302)K52.C and (T0302)S53.C only 0.0000000e+00 apart, marking (T0302)S53.C as missing WARNING: atoms too close: (T0302)S53.N and (T0302)K54.N only 0.0000000e+00 apart, marking (T0302)S53.N as missing WARNING: atoms too close: (T0302)S53.CA and (T0302)K54.CA only 0.0000000e+00 apart, marking (T0302)S53.CA as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.976378 # GDT_score = -76.378 # GDT_score(maxd=8,maxw=2.9)= -80.9388 # GDT_score(maxd=8,maxw=3.2)= -77.1945 # GDT_score(maxd=8,maxw=3.5)= -73.3755 # GDT_score(maxd=10,maxw=3.8)= -75.6839 # GDT_score(maxd=10,maxw=4)= -73.2765 # GDT_score(maxd=10,maxw=4.2)= -70.8909 # GDT_score(maxd=12,maxw=4.3)= -74.3528 # GDT_score(maxd=12,maxw=4.5)= -72.0402 # GDT_score(maxd=12,maxw=4.7)= -69.7778 # GDT_score(maxd=14,maxw=5.2)= -68.0853 # GDT_score(maxd=14,maxw=5.5)= -65.0614 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.984252 # GDT_score = -77.5591 # GDT_score(maxd=8,maxw=2.9)= -81.3726 # GDT_score(maxd=8,maxw=3.2)= -77.3249 # GDT_score(maxd=8,maxw=3.5)= -73.2652 # GDT_score(maxd=10,maxw=3.8)= -75.6605 # GDT_score(maxd=10,maxw=4)= -73.1796 # GDT_score(maxd=10,maxw=4.2)= -70.798 # GDT_score(maxd=12,maxw=4.3)= -74.3046 # GDT_score(maxd=12,maxw=4.5)= -72.0081 # GDT_score(maxd=12,maxw=4.7)= -69.7742 # GDT_score(maxd=14,maxw=5.2)= -68.0233 # GDT_score(maxd=14,maxw=5.5)= -64.8903 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0302)K52.C and (T0302)S53.C only 0.0000000e+00 apart, marking (T0302)S53.C as missing WARNING: atoms too close: (T0302)S53.N and (T0302)K54.N only 0.0000000e+00 apart, marking (T0302)S53.N as missing WARNING: atoms too close: (T0302)S53.CA and (T0302)K54.CA only 0.0000000e+00 apart, marking (T0302)S53.CA as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0302.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0302)S53.C and (T0302)K54.C only 0.0000000e+00 apart, marking (T0302)K54.C as missing WARNING: atoms too close: (T0302)K54.N and (T0302)G55.N only 0.0000000e+00 apart, marking (T0302)K54.N as missing WARNING: atoms too close: (T0302)K54.CA and (T0302)G55.CA only 0.0000000e+00 apart, marking (T0302)K54.CA as missing WARNING: atoms too close: (T0302)S116.C and (T0302)S123.C only 0.0000000e+00 apart, marking (T0302)S123.C as missing WARNING: atoms too close: (T0302)Y117.N and (T0302)D124.N only 0.0000000e+00 apart, marking (T0302)Y117.N as missing WARNING: atoms too close: (T0302)Y117.CA and (T0302)D124.CA only 0.0000000e+00 apart, marking (T0302)Y117.CA as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0302.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 4 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0302.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1795247506.pdb -s /var/tmp/to_scwrl_1795247506.seq -o /var/tmp/from_scwrl_1795247506.pdb > /var/tmp/scwrl_1795247506.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795247506.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_160593633.pdb -s /var/tmp/to_scwrl_160593633.seq -o /var/tmp/from_scwrl_160593633.pdb > /var/tmp/scwrl_160593633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_160593633.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1545773335.pdb -s /var/tmp/to_scwrl_1545773335.seq -o /var/tmp/from_scwrl_1545773335.pdb > /var/tmp/scwrl_1545773335.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1545773335.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1666711068.pdb -s /var/tmp/to_scwrl_1666711068.seq -o /var/tmp/from_scwrl_1666711068.pdb > /var/tmp/scwrl_1666711068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1666711068.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1242251200.pdb -s /var/tmp/to_scwrl_1242251200.seq -o /var/tmp/from_scwrl_1242251200.pdb > /var/tmp/scwrl_1242251200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1242251200.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1992997084.pdb -s /var/tmp/to_scwrl_1992997084.seq -o /var/tmp/from_scwrl_1992997084.pdb > /var/tmp/scwrl_1992997084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1992997084.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1285970217.pdb -s /var/tmp/to_scwrl_1285970217.seq -o /var/tmp/from_scwrl_1285970217.pdb > /var/tmp/scwrl_1285970217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1285970217.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1782326372.pdb -s /var/tmp/to_scwrl_1782326372.seq -o /var/tmp/from_scwrl_1782326372.pdb > /var/tmp/scwrl_1782326372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782326372.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_473801011.pdb -s /var/tmp/to_scwrl_473801011.seq -o /var/tmp/from_scwrl_473801011.pdb > /var/tmp/scwrl_473801011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473801011.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1800356143.pdb -s /var/tmp/to_scwrl_1800356143.seq -o /var/tmp/from_scwrl_1800356143.pdb > /var/tmp/scwrl_1800356143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800356143.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_796127127.pdb -s /var/tmp/to_scwrl_796127127.seq -o /var/tmp/from_scwrl_796127127.pdb > /var/tmp/scwrl_796127127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796127127.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1411196444.pdb -s /var/tmp/to_scwrl_1411196444.seq -o /var/tmp/from_scwrl_1411196444.pdb > /var/tmp/scwrl_1411196444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1411196444.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_784479236.pdb -s /var/tmp/to_scwrl_784479236.seq -o /var/tmp/from_scwrl_784479236.pdb > /var/tmp/scwrl_784479236.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_784479236.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_106042355.pdb -s /var/tmp/to_scwrl_106042355.seq -o /var/tmp/from_scwrl_106042355.pdb > /var/tmp/scwrl_106042355.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_106042355.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_171341241.pdb -s /var/tmp/to_scwrl_171341241.seq -o /var/tmp/from_scwrl_171341241.pdb > /var/tmp/scwrl_171341241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_171341241.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1645663785.pdb -s /var/tmp/to_scwrl_1645663785.seq -o /var/tmp/from_scwrl_1645663785.pdb > /var/tmp/scwrl_1645663785.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1645663785.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1645385360.pdb -s /var/tmp/to_scwrl_1645385360.seq -o /var/tmp/from_scwrl_1645385360.pdb > /var/tmp/scwrl_1645385360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1645385360.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_475661988.pdb -s /var/tmp/to_scwrl_475661988.seq -o /var/tmp/from_scwrl_475661988.pdb > /var/tmp/scwrl_475661988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475661988.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_791581114.pdb -s /var/tmp/to_scwrl_791581114.seq -o /var/tmp/from_scwrl_791581114.pdb > /var/tmp/scwrl_791581114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_791581114.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 6 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_976497338.pdb -s /var/tmp/to_scwrl_976497338.seq -o /var/tmp/from_scwrl_976497338.pdb > /var/tmp/scwrl_976497338.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976497338.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1113119051.pdb -s /var/tmp/to_scwrl_1113119051.seq -o /var/tmp/from_scwrl_1113119051.pdb > /var/tmp/scwrl_1113119051.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1113119051.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1990399790.pdb -s /var/tmp/to_scwrl_1990399790.seq -o /var/tmp/from_scwrl_1990399790.pdb > /var/tmp/scwrl_1990399790.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990399790.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_22048787.pdb -s /var/tmp/to_scwrl_22048787.seq -o /var/tmp/from_scwrl_22048787.pdb > /var/tmp/scwrl_22048787.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22048787.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1989276572.pdb -s /var/tmp/to_scwrl_1989276572.seq -o /var/tmp/from_scwrl_1989276572.pdb > /var/tmp/scwrl_1989276572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1989276572.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_969005579.pdb -s /var/tmp/to_scwrl_969005579.seq -o /var/tmp/from_scwrl_969005579.pdb > /var/tmp/scwrl_969005579.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969005579.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_753399914.pdb -s /var/tmp/to_scwrl_753399914.seq -o /var/tmp/from_scwrl_753399914.pdb > /var/tmp/scwrl_753399914.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753399914.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_843974292.pdb -s /var/tmp/to_scwrl_843974292.seq -o /var/tmp/from_scwrl_843974292.pdb > /var/tmp/scwrl_843974292.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843974292.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1243931804.pdb -s /var/tmp/to_scwrl_1243931804.seq -o /var/tmp/from_scwrl_1243931804.pdb > /var/tmp/scwrl_1243931804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243931804.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1542040104.pdb -s /var/tmp/to_scwrl_1542040104.seq -o /var/tmp/from_scwrl_1542040104.pdb > /var/tmp/scwrl_1542040104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1542040104.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_247662860.pdb -s /var/tmp/to_scwrl_247662860.seq -o /var/tmp/from_scwrl_247662860.pdb > /var/tmp/scwrl_247662860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_247662860.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 119 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1789283081.pdb -s /var/tmp/to_scwrl_1789283081.seq -o /var/tmp/from_scwrl_1789283081.pdb > /var/tmp/scwrl_1789283081.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1789283081.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1189803963.pdb -s /var/tmp/to_scwrl_1189803963.seq -o /var/tmp/from_scwrl_1189803963.pdb > /var/tmp/scwrl_1189803963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189803963.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_408256493.pdb -s /var/tmp/to_scwrl_408256493.seq -o /var/tmp/from_scwrl_408256493.pdb > /var/tmp/scwrl_408256493.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408256493.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1187572769.pdb -s /var/tmp/to_scwrl_1187572769.seq -o /var/tmp/from_scwrl_1187572769.pdb > /var/tmp/scwrl_1187572769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1187572769.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_709031385.pdb -s /var/tmp/to_scwrl_709031385.seq -o /var/tmp/from_scwrl_709031385.pdb > /var/tmp/scwrl_709031385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709031385.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1650507693.pdb -s /var/tmp/to_scwrl_1650507693.seq -o /var/tmp/from_scwrl_1650507693.pdb > /var/tmp/scwrl_1650507693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1650507693.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1033086208.pdb -s /var/tmp/to_scwrl_1033086208.seq -o /var/tmp/from_scwrl_1033086208.pdb > /var/tmp/scwrl_1033086208.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1033086208.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1995001602.pdb -s /var/tmp/to_scwrl_1995001602.seq -o /var/tmp/from_scwrl_1995001602.pdb > /var/tmp/scwrl_1995001602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1995001602.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1285350418.pdb -s /var/tmp/to_scwrl_1285350418.seq -o /var/tmp/from_scwrl_1285350418.pdb > /var/tmp/scwrl_1285350418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1285350418.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1506887218.pdb -s /var/tmp/to_scwrl_1506887218.seq -o /var/tmp/from_scwrl_1506887218.pdb > /var/tmp/scwrl_1506887218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1506887218.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1647874098.pdb -s /var/tmp/to_scwrl_1647874098.seq -o /var/tmp/from_scwrl_1647874098.pdb > /var/tmp/scwrl_1647874098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1647874098.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2081477546.pdb -s /var/tmp/to_scwrl_2081477546.seq -o /var/tmp/from_scwrl_2081477546.pdb > /var/tmp/scwrl_2081477546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2081477546.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_770600016.pdb -s /var/tmp/to_scwrl_770600016.seq -o /var/tmp/from_scwrl_770600016.pdb > /var/tmp/scwrl_770600016.log Error: Couldn't open file /var/tmp/from_scwrl_770600016.pdb or /var/tmp/from_scwrl_770600016.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_770600016_b.pdb or decoys//var/tmp/from_scwrl_770600016_b.pdb.gz for input Trying /var/tmp/from_scwrl_770600016_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_770600016_b.pdb or /var/tmp/from_scwrl_770600016_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_770600016_a.pdb or decoys//var/tmp/from_scwrl_770600016_a.pdb.gz for input Trying /var/tmp/from_scwrl_770600016_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_770600016_a.pdb or /var/tmp/from_scwrl_770600016_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_770600016.pdb or /var/tmp/from_scwrl_770600016_b.pdb or /var/tmp/from_scwrl_770600016_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_284869687.pdb -s /var/tmp/to_scwrl_284869687.seq -o /var/tmp/from_scwrl_284869687.pdb > /var/tmp/scwrl_284869687.log Error: Couldn't open file /var/tmp/from_scwrl_284869687.pdb or /var/tmp/from_scwrl_284869687.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_284869687_b.pdb or decoys//var/tmp/from_scwrl_284869687_b.pdb.gz for input Trying /var/tmp/from_scwrl_284869687_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_284869687_b.pdb or /var/tmp/from_scwrl_284869687_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_284869687_a.pdb or decoys//var/tmp/from_scwrl_284869687_a.pdb.gz for input Trying /var/tmp/from_scwrl_284869687_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_284869687_a.pdb or /var/tmp/from_scwrl_284869687_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_284869687.pdb or /var/tmp/from_scwrl_284869687_b.pdb or /var/tmp/from_scwrl_284869687_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_40036254.pdb -s /var/tmp/to_scwrl_40036254.seq -o /var/tmp/from_scwrl_40036254.pdb > /var/tmp/scwrl_40036254.log Error: Couldn't open file /var/tmp/from_scwrl_40036254.pdb or /var/tmp/from_scwrl_40036254.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_40036254_b.pdb or decoys//var/tmp/from_scwrl_40036254_b.pdb.gz for input Trying /var/tmp/from_scwrl_40036254_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_40036254_b.pdb or /var/tmp/from_scwrl_40036254_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_40036254_a.pdb or decoys//var/tmp/from_scwrl_40036254_a.pdb.gz for input Trying /var/tmp/from_scwrl_40036254_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_40036254_a.pdb or /var/tmp/from_scwrl_40036254_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_40036254.pdb or /var/tmp/from_scwrl_40036254_b.pdb or /var/tmp/from_scwrl_40036254_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_941941257.pdb -s /var/tmp/to_scwrl_941941257.seq -o /var/tmp/from_scwrl_941941257.pdb > /var/tmp/scwrl_941941257.log Error: Couldn't open file /var/tmp/from_scwrl_941941257.pdb or /var/tmp/from_scwrl_941941257.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_941941257_b.pdb or decoys//var/tmp/from_scwrl_941941257_b.pdb.gz for input Trying /var/tmp/from_scwrl_941941257_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_941941257_b.pdb or /var/tmp/from_scwrl_941941257_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_941941257_a.pdb or decoys//var/tmp/from_scwrl_941941257_a.pdb.gz for input Trying /var/tmp/from_scwrl_941941257_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_941941257_a.pdb or /var/tmp/from_scwrl_941941257_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_941941257.pdb or /var/tmp/from_scwrl_941941257_b.pdb or /var/tmp/from_scwrl_941941257_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1930533472.pdb -s /var/tmp/to_scwrl_1930533472.seq -o /var/tmp/from_scwrl_1930533472.pdb > /var/tmp/scwrl_1930533472.log Error: Couldn't open file /var/tmp/from_scwrl_1930533472.pdb or /var/tmp/from_scwrl_1930533472.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1930533472_b.pdb or decoys//var/tmp/from_scwrl_1930533472_b.pdb.gz for input Trying /var/tmp/from_scwrl_1930533472_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1930533472_b.pdb or /var/tmp/from_scwrl_1930533472_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1930533472_a.pdb or decoys//var/tmp/from_scwrl_1930533472_a.pdb.gz for input Trying /var/tmp/from_scwrl_1930533472_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1930533472_a.pdb or /var/tmp/from_scwrl_1930533472_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1930533472.pdb or /var/tmp/from_scwrl_1930533472_b.pdb or /var/tmp/from_scwrl_1930533472_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1685421615.pdb -s /var/tmp/to_scwrl_1685421615.seq -o /var/tmp/from_scwrl_1685421615.pdb > /var/tmp/scwrl_1685421615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1685421615.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1417603244.pdb -s /var/tmp/to_scwrl_1417603244.seq -o /var/tmp/from_scwrl_1417603244.pdb > /var/tmp/scwrl_1417603244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1417603244.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_574630939.pdb -s /var/tmp/to_scwrl_574630939.seq -o /var/tmp/from_scwrl_574630939.pdb > /var/tmp/scwrl_574630939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_574630939.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 123 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_514435306.pdb -s /var/tmp/to_scwrl_514435306.seq -o /var/tmp/from_scwrl_514435306.pdb > /var/tmp/scwrl_514435306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514435306.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_383238650.pdb -s /var/tmp/to_scwrl_383238650.seq -o /var/tmp/from_scwrl_383238650.pdb > /var/tmp/scwrl_383238650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_383238650.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_417547082.pdb -s /var/tmp/to_scwrl_417547082.seq -o /var/tmp/from_scwrl_417547082.pdb > /var/tmp/scwrl_417547082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417547082.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 121 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_536484094.pdb -s /var/tmp/to_scwrl_536484094.seq -o /var/tmp/from_scwrl_536484094.pdb > /var/tmp/scwrl_536484094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536484094.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_225031575.pdb -s /var/tmp/to_scwrl_225031575.seq -o /var/tmp/from_scwrl_225031575.pdb > /var/tmp/scwrl_225031575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225031575.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1386552661.pdb -s /var/tmp/to_scwrl_1386552661.seq -o /var/tmp/from_scwrl_1386552661.pdb > /var/tmp/scwrl_1386552661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386552661.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 124 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1289884007.pdb -s /var/tmp/to_scwrl_1289884007.seq -o /var/tmp/from_scwrl_1289884007.pdb > /var/tmp/scwrl_1289884007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1289884007.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 34 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1069005868.pdb -s /var/tmp/to_scwrl_1069005868.seq -o /var/tmp/from_scwrl_1069005868.pdb > /var/tmp/scwrl_1069005868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1069005868.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_483000819.pdb -s /var/tmp/to_scwrl_483000819.seq -o /var/tmp/from_scwrl_483000819.pdb > /var/tmp/scwrl_483000819.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_483000819.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_684440465.pdb -s /var/tmp/to_scwrl_684440465.seq -o /var/tmp/from_scwrl_684440465.pdb > /var/tmp/scwrl_684440465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_684440465.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1316668727.pdb -s /var/tmp/to_scwrl_1316668727.seq -o /var/tmp/from_scwrl_1316668727.pdb > /var/tmp/scwrl_1316668727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1316668727.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_124800253.pdb -s /var/tmp/to_scwrl_124800253.seq -o /var/tmp/from_scwrl_124800253.pdb > /var/tmp/scwrl_124800253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_124800253.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1874244428.pdb -s /var/tmp/to_scwrl_1874244428.seq -o /var/tmp/from_scwrl_1874244428.pdb > /var/tmp/scwrl_1874244428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874244428.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1724925221.pdb -s /var/tmp/to_scwrl_1724925221.seq -o /var/tmp/from_scwrl_1724925221.pdb > /var/tmp/scwrl_1724925221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724925221.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1312373022.pdb -s /var/tmp/to_scwrl_1312373022.seq -o /var/tmp/from_scwrl_1312373022.pdb > /var/tmp/scwrl_1312373022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1312373022.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL4.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_435792166.pdb -s /var/tmp/to_scwrl_435792166.seq -o /var/tmp/from_scwrl_435792166.pdb > /var/tmp/scwrl_435792166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_435792166.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1227949267.pdb -s /var/tmp/to_scwrl_1227949267.seq -o /var/tmp/from_scwrl_1227949267.pdb > /var/tmp/scwrl_1227949267.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1227949267.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_197975583.pdb -s /var/tmp/to_scwrl_197975583.seq -o /var/tmp/from_scwrl_197975583.pdb > /var/tmp/scwrl_197975583.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_197975583.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_283310121.pdb -s /var/tmp/to_scwrl_283310121.seq -o /var/tmp/from_scwrl_283310121.pdb > /var/tmp/scwrl_283310121.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_283310121.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_365816040.pdb -s /var/tmp/to_scwrl_365816040.seq -o /var/tmp/from_scwrl_365816040.pdb > /var/tmp/scwrl_365816040.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_365816040.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL4.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1704862801.pdb -s /var/tmp/to_scwrl_1704862801.seq -o /var/tmp/from_scwrl_1704862801.pdb > /var/tmp/scwrl_1704862801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704862801.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1931184220.pdb -s /var/tmp/to_scwrl_1931184220.seq -o /var/tmp/from_scwrl_1931184220.pdb > /var/tmp/scwrl_1931184220.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931184220.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 40 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_299809939.pdb -s /var/tmp/to_scwrl_299809939.seq -o /var/tmp/from_scwrl_299809939.pdb > /var/tmp/scwrl_299809939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299809939.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_327979170.pdb -s /var/tmp/to_scwrl_327979170.seq -o /var/tmp/from_scwrl_327979170.pdb > /var/tmp/scwrl_327979170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_327979170.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_68570260.pdb -s /var/tmp/to_scwrl_68570260.seq -o /var/tmp/from_scwrl_68570260.pdb > /var/tmp/scwrl_68570260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68570260.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 120 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_339846193.pdb -s /var/tmp/to_scwrl_339846193.seq -o /var/tmp/from_scwrl_339846193.pdb > /var/tmp/scwrl_339846193.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_339846193.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1269920426.pdb -s /var/tmp/to_scwrl_1269920426.seq -o /var/tmp/from_scwrl_1269920426.pdb > /var/tmp/scwrl_1269920426.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1269920426.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1999103733.pdb -s /var/tmp/to_scwrl_1999103733.seq -o /var/tmp/from_scwrl_1999103733.pdb > /var/tmp/scwrl_1999103733.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1999103733.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2025267808.pdb -s /var/tmp/to_scwrl_2025267808.seq -o /var/tmp/from_scwrl_2025267808.pdb > /var/tmp/scwrl_2025267808.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025267808.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_540040025.pdb -s /var/tmp/to_scwrl_540040025.seq -o /var/tmp/from_scwrl_540040025.pdb > /var/tmp/scwrl_540040025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540040025.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_426251025.pdb -s /var/tmp/to_scwrl_426251025.seq -o /var/tmp/from_scwrl_426251025.pdb > /var/tmp/scwrl_426251025.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_426251025.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_392219468.pdb -s /var/tmp/to_scwrl_392219468.seq -o /var/tmp/from_scwrl_392219468.pdb > /var/tmp/scwrl_392219468.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_392219468.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_923278675.pdb -s /var/tmp/to_scwrl_923278675.seq -o /var/tmp/from_scwrl_923278675.pdb > /var/tmp/scwrl_923278675.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923278675.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_843798108.pdb -s /var/tmp/to_scwrl_843798108.seq -o /var/tmp/from_scwrl_843798108.pdb > /var/tmp/scwrl_843798108.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_843798108.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_928703562.pdb -s /var/tmp/to_scwrl_928703562.seq -o /var/tmp/from_scwrl_928703562.pdb > /var/tmp/scwrl_928703562.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928703562.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1148310249.pdb -s /var/tmp/to_scwrl_1148310249.seq -o /var/tmp/from_scwrl_1148310249.pdb > /var/tmp/scwrl_1148310249.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1148310249.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_82867122.pdb -s /var/tmp/to_scwrl_82867122.seq -o /var/tmp/from_scwrl_82867122.pdb > /var/tmp/scwrl_82867122.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_82867122.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_71103922.pdb -s /var/tmp/to_scwrl_71103922.seq -o /var/tmp/from_scwrl_71103922.pdb > /var/tmp/scwrl_71103922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71103922.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_69832470.pdb -s /var/tmp/to_scwrl_69832470.seq -o /var/tmp/from_scwrl_69832470.pdb > /var/tmp/scwrl_69832470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69832470.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_565867941.pdb -s /var/tmp/to_scwrl_565867941.seq -o /var/tmp/from_scwrl_565867941.pdb > /var/tmp/scwrl_565867941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565867941.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 128 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_755544388.pdb -s /var/tmp/to_scwrl_755544388.seq -o /var/tmp/from_scwrl_755544388.pdb > /var/tmp/scwrl_755544388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_755544388.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1386501198.pdb -s /var/tmp/to_scwrl_1386501198.seq -o /var/tmp/from_scwrl_1386501198.pdb > /var/tmp/scwrl_1386501198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386501198.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_690668194.pdb -s /var/tmp/to_scwrl_690668194.seq -o /var/tmp/from_scwrl_690668194.pdb > /var/tmp/scwrl_690668194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690668194.pdb # conformation set from SCWRL output # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_482305169.pdb -s /var/tmp/to_scwrl_482305169.seq -o /var/tmp/from_scwrl_482305169.pdb > /var/tmp/scwrl_482305169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482305169.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_963942773.pdb -s /var/tmp/to_scwrl_963942773.seq -o /var/tmp/from_scwrl_963942773.pdb > /var/tmp/scwrl_963942773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963942773.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2003041216.pdb -s /var/tmp/to_scwrl_2003041216.seq -o /var/tmp/from_scwrl_2003041216.pdb > /var/tmp/scwrl_2003041216.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2003041216.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_918097336.pdb -s /var/tmp/to_scwrl_918097336.seq -o /var/tmp/from_scwrl_918097336.pdb > /var/tmp/scwrl_918097336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_918097336.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_44408393.pdb -s /var/tmp/to_scwrl_44408393.seq -o /var/tmp/from_scwrl_44408393.pdb > /var/tmp/scwrl_44408393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44408393.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_53533153.pdb -s /var/tmp/to_scwrl_53533153.seq -o /var/tmp/from_scwrl_53533153.pdb > /var/tmp/scwrl_53533153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53533153.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1201407456.pdb -s /var/tmp/to_scwrl_1201407456.seq -o /var/tmp/from_scwrl_1201407456.pdb > /var/tmp/scwrl_1201407456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1201407456.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_410224433.pdb -s /var/tmp/to_scwrl_410224433.seq -o /var/tmp/from_scwrl_410224433.pdb > /var/tmp/scwrl_410224433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410224433.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1758395954.pdb -s /var/tmp/to_scwrl_1758395954.seq -o /var/tmp/from_scwrl_1758395954.pdb > /var/tmp/scwrl_1758395954.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1758395954.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_985108030.pdb -s /var/tmp/to_scwrl_985108030.seq -o /var/tmp/from_scwrl_985108030.pdb > /var/tmp/scwrl_985108030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_985108030.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_710034372.pdb -s /var/tmp/to_scwrl_710034372.seq -o /var/tmp/from_scwrl_710034372.pdb > /var/tmp/scwrl_710034372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_710034372.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2086375125.pdb -s /var/tmp/to_scwrl_2086375125.seq -o /var/tmp/from_scwrl_2086375125.pdb > /var/tmp/scwrl_2086375125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2086375125.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1053678291.pdb -s /var/tmp/to_scwrl_1053678291.seq -o /var/tmp/from_scwrl_1053678291.pdb > /var/tmp/scwrl_1053678291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1053678291.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1049880566.pdb -s /var/tmp/to_scwrl_1049880566.seq -o /var/tmp/from_scwrl_1049880566.pdb > /var/tmp/scwrl_1049880566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1049880566.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1208811904.pdb -s /var/tmp/to_scwrl_1208811904.seq -o /var/tmp/from_scwrl_1208811904.pdb > /var/tmp/scwrl_1208811904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1208811904.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_905298377.pdb -s /var/tmp/to_scwrl_905298377.seq -o /var/tmp/from_scwrl_905298377.pdb > /var/tmp/scwrl_905298377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_905298377.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_927664727.pdb -s /var/tmp/to_scwrl_927664727.seq -o /var/tmp/from_scwrl_927664727.pdb > /var/tmp/scwrl_927664727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_927664727.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1748851929.pdb -s /var/tmp/to_scwrl_1748851929.seq -o /var/tmp/from_scwrl_1748851929.pdb > /var/tmp/scwrl_1748851929.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1748851929.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1331549401.pdb -s /var/tmp/to_scwrl_1331549401.seq -o /var/tmp/from_scwrl_1331549401.pdb > /var/tmp/scwrl_1331549401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331549401.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 57 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1319884194.pdb -s /var/tmp/to_scwrl_1319884194.seq -o /var/tmp/from_scwrl_1319884194.pdb > /var/tmp/scwrl_1319884194.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1319884194.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_524646957.pdb -s /var/tmp/to_scwrl_524646957.seq -o /var/tmp/from_scwrl_524646957.pdb > /var/tmp/scwrl_524646957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_524646957.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_27863862.pdb -s /var/tmp/to_scwrl_27863862.seq -o /var/tmp/from_scwrl_27863862.pdb > /var/tmp/scwrl_27863862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27863862.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_101104109.pdb -s /var/tmp/to_scwrl_101104109.seq -o /var/tmp/from_scwrl_101104109.pdb > /var/tmp/scwrl_101104109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101104109.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1672957207.pdb -s /var/tmp/to_scwrl_1672957207.seq -o /var/tmp/from_scwrl_1672957207.pdb > /var/tmp/scwrl_1672957207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1672957207.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_110730984.pdb -s /var/tmp/to_scwrl_110730984.seq -o /var/tmp/from_scwrl_110730984.pdb > /var/tmp/scwrl_110730984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110730984.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_172208032.pdb -s /var/tmp/to_scwrl_172208032.seq -o /var/tmp/from_scwrl_172208032.pdb > /var/tmp/scwrl_172208032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172208032.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1742789677.pdb -s /var/tmp/to_scwrl_1742789677.seq -o /var/tmp/from_scwrl_1742789677.pdb > /var/tmp/scwrl_1742789677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1742789677.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_676598925.pdb -s /var/tmp/to_scwrl_676598925.seq -o /var/tmp/from_scwrl_676598925.pdb > /var/tmp/scwrl_676598925.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_676598925.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_927752420.pdb -s /var/tmp/to_scwrl_927752420.seq -o /var/tmp/from_scwrl_927752420.pdb > /var/tmp/scwrl_927752420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_927752420.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_981807229.pdb -s /var/tmp/to_scwrl_981807229.seq -o /var/tmp/from_scwrl_981807229.pdb > /var/tmp/scwrl_981807229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_981807229.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1367267118.pdb -s /var/tmp/to_scwrl_1367267118.seq -o /var/tmp/from_scwrl_1367267118.pdb > /var/tmp/scwrl_1367267118.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367267118.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1410057588.pdb -s /var/tmp/to_scwrl_1410057588.seq -o /var/tmp/from_scwrl_1410057588.pdb > /var/tmp/scwrl_1410057588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1410057588.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1945750001.pdb -s /var/tmp/to_scwrl_1945750001.seq -o /var/tmp/from_scwrl_1945750001.pdb > /var/tmp/scwrl_1945750001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1945750001.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1222824688.pdb -s /var/tmp/to_scwrl_1222824688.seq -o /var/tmp/from_scwrl_1222824688.pdb > /var/tmp/scwrl_1222824688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222824688.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_180671277.pdb -s /var/tmp/to_scwrl_180671277.seq -o /var/tmp/from_scwrl_180671277.pdb > /var/tmp/scwrl_180671277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_180671277.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1990158395.pdb -s /var/tmp/to_scwrl_1990158395.seq -o /var/tmp/from_scwrl_1990158395.pdb > /var/tmp/scwrl_1990158395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990158395.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1276357841.pdb -s /var/tmp/to_scwrl_1276357841.seq -o /var/tmp/from_scwrl_1276357841.pdb > /var/tmp/scwrl_1276357841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276357841.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1382078734.pdb -s /var/tmp/to_scwrl_1382078734.seq -o /var/tmp/from_scwrl_1382078734.pdb > /var/tmp/scwrl_1382078734.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382078734.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_252899181.pdb -s /var/tmp/to_scwrl_252899181.seq -o /var/tmp/from_scwrl_252899181.pdb > /var/tmp/scwrl_252899181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252899181.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_887270149.pdb -s /var/tmp/to_scwrl_887270149.seq -o /var/tmp/from_scwrl_887270149.pdb > /var/tmp/scwrl_887270149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887270149.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_219703117.pdb -s /var/tmp/to_scwrl_219703117.seq -o /var/tmp/from_scwrl_219703117.pdb > /var/tmp/scwrl_219703117.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219703117.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_962933554.pdb -s /var/tmp/to_scwrl_962933554.seq -o /var/tmp/from_scwrl_962933554.pdb > /var/tmp/scwrl_962933554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_962933554.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_826161627.pdb -s /var/tmp/to_scwrl_826161627.seq -o /var/tmp/from_scwrl_826161627.pdb > /var/tmp/scwrl_826161627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_826161627.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1273381407.pdb -s /var/tmp/to_scwrl_1273381407.seq -o /var/tmp/from_scwrl_1273381407.pdb > /var/tmp/scwrl_1273381407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273381407.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2012814119.pdb -s /var/tmp/to_scwrl_2012814119.seq -o /var/tmp/from_scwrl_2012814119.pdb > /var/tmp/scwrl_2012814119.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012814119.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2034973532.pdb -s /var/tmp/to_scwrl_2034973532.seq -o /var/tmp/from_scwrl_2034973532.pdb > /var/tmp/scwrl_2034973532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2034973532.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_31196137.pdb -s /var/tmp/to_scwrl_31196137.seq -o /var/tmp/from_scwrl_31196137.pdb > /var/tmp/scwrl_31196137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_31196137.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_792995199.pdb -s /var/tmp/to_scwrl_792995199.seq -o /var/tmp/from_scwrl_792995199.pdb > /var/tmp/scwrl_792995199.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_792995199.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1636341814.pdb -s /var/tmp/to_scwrl_1636341814.seq -o /var/tmp/from_scwrl_1636341814.pdb > /var/tmp/scwrl_1636341814.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636341814.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1362745539.pdb -s /var/tmp/to_scwrl_1362745539.seq -o /var/tmp/from_scwrl_1362745539.pdb > /var/tmp/scwrl_1362745539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1362745539.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2112879394.pdb -s /var/tmp/to_scwrl_2112879394.seq -o /var/tmp/from_scwrl_2112879394.pdb > /var/tmp/scwrl_2112879394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2112879394.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_13505125.pdb -s /var/tmp/to_scwrl_13505125.seq -o /var/tmp/from_scwrl_13505125.pdb > /var/tmp/scwrl_13505125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_13505125.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1390609401.pdb -s /var/tmp/to_scwrl_1390609401.seq -o /var/tmp/from_scwrl_1390609401.pdb > /var/tmp/scwrl_1390609401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1390609401.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_66499856.pdb -s /var/tmp/to_scwrl_66499856.seq -o /var/tmp/from_scwrl_66499856.pdb > /var/tmp/scwrl_66499856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66499856.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1686462332.pdb -s /var/tmp/to_scwrl_1686462332.seq -o /var/tmp/from_scwrl_1686462332.pdb > /var/tmp/scwrl_1686462332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686462332.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1501340386.pdb -s /var/tmp/to_scwrl_1501340386.seq -o /var/tmp/from_scwrl_1501340386.pdb > /var/tmp/scwrl_1501340386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501340386.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_238707888.pdb -s /var/tmp/to_scwrl_238707888.seq -o /var/tmp/from_scwrl_238707888.pdb > /var/tmp/scwrl_238707888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_238707888.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1281768362.pdb -s /var/tmp/to_scwrl_1281768362.seq -o /var/tmp/from_scwrl_1281768362.pdb > /var/tmp/scwrl_1281768362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281768362.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_30455664.pdb -s /var/tmp/to_scwrl_30455664.seq -o /var/tmp/from_scwrl_30455664.pdb > /var/tmp/scwrl_30455664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30455664.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1166460307.pdb -s /var/tmp/to_scwrl_1166460307.seq -o /var/tmp/from_scwrl_1166460307.pdb > /var/tmp/scwrl_1166460307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166460307.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_116091945.pdb -s /var/tmp/to_scwrl_116091945.seq -o /var/tmp/from_scwrl_116091945.pdb > /var/tmp/scwrl_116091945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116091945.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 101 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1397722783.pdb -s /var/tmp/to_scwrl_1397722783.seq -o /var/tmp/from_scwrl_1397722783.pdb > /var/tmp/scwrl_1397722783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1397722783.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_429034250.pdb -s /var/tmp/to_scwrl_429034250.seq -o /var/tmp/from_scwrl_429034250.pdb > /var/tmp/scwrl_429034250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_429034250.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2061841946.pdb -s /var/tmp/to_scwrl_2061841946.seq -o /var/tmp/from_scwrl_2061841946.pdb > /var/tmp/scwrl_2061841946.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2061841946.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_473063825.pdb -s /var/tmp/to_scwrl_473063825.seq -o /var/tmp/from_scwrl_473063825.pdb > /var/tmp/scwrl_473063825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473063825.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_609705527.pdb -s /var/tmp/to_scwrl_609705527.seq -o /var/tmp/from_scwrl_609705527.pdb > /var/tmp/scwrl_609705527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609705527.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1904516694.pdb -s /var/tmp/to_scwrl_1904516694.seq -o /var/tmp/from_scwrl_1904516694.pdb > /var/tmp/scwrl_1904516694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904516694.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 3 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1749421666.pdb -s /var/tmp/to_scwrl_1749421666.seq -o /var/tmp/from_scwrl_1749421666.pdb > /var/tmp/scwrl_1749421666.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749421666.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1991784261.pdb -s /var/tmp/to_scwrl_1991784261.seq -o /var/tmp/from_scwrl_1991784261.pdb > /var/tmp/scwrl_1991784261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991784261.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_9932229.pdb -s /var/tmp/to_scwrl_9932229.seq -o /var/tmp/from_scwrl_9932229.pdb > /var/tmp/scwrl_9932229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_9932229.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_489208168.pdb -s /var/tmp/to_scwrl_489208168.seq -o /var/tmp/from_scwrl_489208168.pdb > /var/tmp/scwrl_489208168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_489208168.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_64003732.pdb -s /var/tmp/to_scwrl_64003732.seq -o /var/tmp/from_scwrl_64003732.pdb > /var/tmp/scwrl_64003732.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64003732.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_972865783.pdb -s /var/tmp/to_scwrl_972865783.seq -o /var/tmp/from_scwrl_972865783.pdb > /var/tmp/scwrl_972865783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_972865783.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1315369795.pdb -s /var/tmp/to_scwrl_1315369795.seq -o /var/tmp/from_scwrl_1315369795.pdb > /var/tmp/scwrl_1315369795.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315369795.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 59 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1337385139.pdb -s /var/tmp/to_scwrl_1337385139.seq -o /var/tmp/from_scwrl_1337385139.pdb > /var/tmp/scwrl_1337385139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337385139.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_838196255.pdb -s /var/tmp/to_scwrl_838196255.seq -o /var/tmp/from_scwrl_838196255.pdb > /var/tmp/scwrl_838196255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838196255.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1202859680.pdb -s /var/tmp/to_scwrl_1202859680.seq -o /var/tmp/from_scwrl_1202859680.pdb > /var/tmp/scwrl_1202859680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202859680.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1368581277.pdb -s /var/tmp/to_scwrl_1368581277.seq -o /var/tmp/from_scwrl_1368581277.pdb > /var/tmp/scwrl_1368581277.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368581277.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1631191453.pdb -s /var/tmp/to_scwrl_1631191453.seq -o /var/tmp/from_scwrl_1631191453.pdb > /var/tmp/scwrl_1631191453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631191453.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T02_AL3.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_691717848.pdb -s /var/tmp/to_scwrl_691717848.seq -o /var/tmp/from_scwrl_691717848.pdb > /var/tmp/scwrl_691717848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691717848.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_583843170.pdb -s /var/tmp/to_scwrl_583843170.seq -o /var/tmp/from_scwrl_583843170.pdb > /var/tmp/scwrl_583843170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_583843170.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1596587200.pdb -s /var/tmp/to_scwrl_1596587200.seq -o /var/tmp/from_scwrl_1596587200.pdb > /var/tmp/scwrl_1596587200.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1596587200.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_705222973.pdb -s /var/tmp/to_scwrl_705222973.seq -o /var/tmp/from_scwrl_705222973.pdb > /var/tmp/scwrl_705222973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_705222973.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 Skipped atom 197, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 230, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz Skipped atom 271, because occupancy 1.000 <= existing 1.000 in servers/SAM-T99_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1974452571.pdb -s /var/tmp/to_scwrl_1974452571.seq -o /var/tmp/from_scwrl_1974452571.pdb > /var/tmp/scwrl_1974452571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1974452571.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1663087057.pdb -s /var/tmp/to_scwrl_1663087057.seq -o /var/tmp/from_scwrl_1663087057.pdb > /var/tmp/scwrl_1663087057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663087057.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_244201658.pdb -s /var/tmp/to_scwrl_244201658.seq -o /var/tmp/from_scwrl_244201658.pdb > /var/tmp/scwrl_244201658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244201658.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1328309310.pdb -s /var/tmp/to_scwrl_1328309310.seq -o /var/tmp/from_scwrl_1328309310.pdb > /var/tmp/scwrl_1328309310.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1328309310.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1901794945.pdb -s /var/tmp/to_scwrl_1901794945.seq -o /var/tmp/from_scwrl_1901794945.pdb > /var/tmp/scwrl_1901794945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1901794945.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1525970021.pdb -s /var/tmp/to_scwrl_1525970021.seq -o /var/tmp/from_scwrl_1525970021.pdb > /var/tmp/scwrl_1525970021.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1525970021.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1358764975.pdb -s /var/tmp/to_scwrl_1358764975.seq -o /var/tmp/from_scwrl_1358764975.pdb > /var/tmp/scwrl_1358764975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1358764975.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_920771607.pdb -s /var/tmp/to_scwrl_920771607.seq -o /var/tmp/from_scwrl_920771607.pdb > /var/tmp/scwrl_920771607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_920771607.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1642061966.pdb -s /var/tmp/to_scwrl_1642061966.seq -o /var/tmp/from_scwrl_1642061966.pdb > /var/tmp/scwrl_1642061966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1642061966.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_609004112.pdb -s /var/tmp/to_scwrl_609004112.seq -o /var/tmp/from_scwrl_609004112.pdb > /var/tmp/scwrl_609004112.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609004112.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1349805856.pdb -s /var/tmp/to_scwrl_1349805856.seq -o /var/tmp/from_scwrl_1349805856.pdb > /var/tmp/scwrl_1349805856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349805856.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1556420265.pdb -s /var/tmp/to_scwrl_1556420265.seq -o /var/tmp/from_scwrl_1556420265.pdb > /var/tmp/scwrl_1556420265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1556420265.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1082067936.pdb -s /var/tmp/to_scwrl_1082067936.seq -o /var/tmp/from_scwrl_1082067936.pdb > /var/tmp/scwrl_1082067936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1082067936.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1959511383.pdb -s /var/tmp/to_scwrl_1959511383.seq -o /var/tmp/from_scwrl_1959511383.pdb > /var/tmp/scwrl_1959511383.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1959511383.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1313453313.pdb -s /var/tmp/to_scwrl_1313453313.seq -o /var/tmp/from_scwrl_1313453313.pdb > /var/tmp/scwrl_1313453313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313453313.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_684005956.pdb -s /var/tmp/to_scwrl_684005956.seq -o /var/tmp/from_scwrl_684005956.pdb > /var/tmp/scwrl_684005956.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_684005956.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1803811998.pdb -s /var/tmp/to_scwrl_1803811998.seq -o /var/tmp/from_scwrl_1803811998.pdb > /var/tmp/scwrl_1803811998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1803811998.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1323385542.pdb -s /var/tmp/to_scwrl_1323385542.seq -o /var/tmp/from_scwrl_1323385542.pdb > /var/tmp/scwrl_1323385542.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323385542.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1173214123.pdb -s /var/tmp/to_scwrl_1173214123.seq -o /var/tmp/from_scwrl_1173214123.pdb > /var/tmp/scwrl_1173214123.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173214123.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1867815730.pdb -s /var/tmp/to_scwrl_1867815730.seq -o /var/tmp/from_scwrl_1867815730.pdb > /var/tmp/scwrl_1867815730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867815730.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_148767678.pdb -s /var/tmp/to_scwrl_148767678.seq -o /var/tmp/from_scwrl_148767678.pdb > /var/tmp/scwrl_148767678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148767678.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_341100272.pdb -s /var/tmp/to_scwrl_341100272.seq -o /var/tmp/from_scwrl_341100272.pdb > /var/tmp/scwrl_341100272.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_341100272.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1057717223.pdb -s /var/tmp/to_scwrl_1057717223.seq -o /var/tmp/from_scwrl_1057717223.pdb > /var/tmp/scwrl_1057717223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1057717223.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_986963933.pdb -s /var/tmp/to_scwrl_986963933.seq -o /var/tmp/from_scwrl_986963933.pdb > /var/tmp/scwrl_986963933.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986963933.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1543959952.pdb -s /var/tmp/to_scwrl_1543959952.seq -o /var/tmp/from_scwrl_1543959952.pdb > /var/tmp/scwrl_1543959952.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543959952.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_278814853.pdb -s /var/tmp/to_scwrl_278814853.seq -o /var/tmp/from_scwrl_278814853.pdb > /var/tmp/scwrl_278814853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_278814853.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_470671739.pdb -s /var/tmp/to_scwrl_470671739.seq -o /var/tmp/from_scwrl_470671739.pdb > /var/tmp/scwrl_470671739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470671739.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_88194154.pdb -s /var/tmp/to_scwrl_88194154.seq -o /var/tmp/from_scwrl_88194154.pdb > /var/tmp/scwrl_88194154.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_88194154.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_862658023.pdb -s /var/tmp/to_scwrl_862658023.seq -o /var/tmp/from_scwrl_862658023.pdb > /var/tmp/scwrl_862658023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_862658023.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2067258940.pdb -s /var/tmp/to_scwrl_2067258940.seq -o /var/tmp/from_scwrl_2067258940.pdb > /var/tmp/scwrl_2067258940.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2067258940.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_793417127.pdb -s /var/tmp/to_scwrl_793417127.seq -o /var/tmp/from_scwrl_793417127.pdb > /var/tmp/scwrl_793417127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793417127.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/UNI-EID_sfst_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_689626948.pdb -s /var/tmp/to_scwrl_689626948.seq -o /var/tmp/from_scwrl_689626948.pdb > /var/tmp/scwrl_689626948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_689626948.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1582862350.pdb -s /var/tmp/to_scwrl_1582862350.seq -o /var/tmp/from_scwrl_1582862350.pdb > /var/tmp/scwrl_1582862350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582862350.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1037618786.pdb -s /var/tmp/to_scwrl_1037618786.seq -o /var/tmp/from_scwrl_1037618786.pdb > /var/tmp/scwrl_1037618786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1037618786.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2017936258.pdb -s /var/tmp/to_scwrl_2017936258.seq -o /var/tmp/from_scwrl_2017936258.pdb > /var/tmp/scwrl_2017936258.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2017936258.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1337173648.pdb -s /var/tmp/to_scwrl_1337173648.seq -o /var/tmp/from_scwrl_1337173648.pdb > /var/tmp/scwrl_1337173648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337173648.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 2 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_416105160.pdb -s /var/tmp/to_scwrl_416105160.seq -o /var/tmp/from_scwrl_416105160.pdb > /var/tmp/scwrl_416105160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416105160.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1229217586.pdb -s /var/tmp/to_scwrl_1229217586.seq -o /var/tmp/from_scwrl_1229217586.pdb > /var/tmp/scwrl_1229217586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1229217586.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_110461608.pdb -s /var/tmp/to_scwrl_110461608.seq -o /var/tmp/from_scwrl_110461608.pdb > /var/tmp/scwrl_110461608.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110461608.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2058167126.pdb -s /var/tmp/to_scwrl_2058167126.seq -o /var/tmp/from_scwrl_2058167126.pdb > /var/tmp/scwrl_2058167126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2058167126.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 131 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1838221698.pdb -s /var/tmp/to_scwrl_1838221698.seq -o /var/tmp/from_scwrl_1838221698.pdb > /var/tmp/scwrl_1838221698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838221698.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1460267464.pdb -s /var/tmp/to_scwrl_1460267464.seq -o /var/tmp/from_scwrl_1460267464.pdb > /var/tmp/scwrl_1460267464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460267464.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1467103744.pdb -s /var/tmp/to_scwrl_1467103744.seq -o /var/tmp/from_scwrl_1467103744.pdb > /var/tmp/scwrl_1467103744.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1467103744.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 Skipped atom 266, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 268, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 270, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 272, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 274, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 276, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 278, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 280, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 282, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 284, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 286, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 288, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 290, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 292, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 294, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz Skipped atom 296, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_772805988.pdb -s /var/tmp/to_scwrl_772805988.seq -o /var/tmp/from_scwrl_772805988.pdb > /var/tmp/scwrl_772805988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772805988.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1272295201.pdb -s /var/tmp/to_scwrl_1272295201.seq -o /var/tmp/from_scwrl_1272295201.pdb > /var/tmp/scwrl_1272295201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1272295201.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_633073411.pdb -s /var/tmp/to_scwrl_633073411.seq -o /var/tmp/from_scwrl_633073411.pdb > /var/tmp/scwrl_633073411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_633073411.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1456811943.pdb -s /var/tmp/to_scwrl_1456811943.seq -o /var/tmp/from_scwrl_1456811943.pdb > /var/tmp/scwrl_1456811943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456811943.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_928623553.pdb -s /var/tmp/to_scwrl_928623553.seq -o /var/tmp/from_scwrl_928623553.pdb > /var/tmp/scwrl_928623553.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928623553.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 Skipped atom 209, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 242, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz Skipped atom 283, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL2.pdb.gz # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1956458953.pdb -s /var/tmp/to_scwrl_1956458953.seq -o /var/tmp/from_scwrl_1956458953.pdb > /var/tmp/scwrl_1956458953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1956458953.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_482542421.pdb -s /var/tmp/to_scwrl_482542421.seq -o /var/tmp/from_scwrl_482542421.pdb > /var/tmp/scwrl_482542421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_482542421.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_648955636.pdb -s /var/tmp/to_scwrl_648955636.seq -o /var/tmp/from_scwrl_648955636.pdb > /var/tmp/scwrl_648955636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_648955636.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2105226631.pdb -s /var/tmp/to_scwrl_2105226631.seq -o /var/tmp/from_scwrl_2105226631.pdb > /var/tmp/scwrl_2105226631.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2105226631.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_823642693.pdb -s /var/tmp/to_scwrl_823642693.seq -o /var/tmp/from_scwrl_823642693.pdb > /var/tmp/scwrl_823642693.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_823642693.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1706672858.pdb -s /var/tmp/to_scwrl_1706672858.seq -o /var/tmp/from_scwrl_1706672858.pdb > /var/tmp/scwrl_1706672858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706672858.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_944706917.pdb -s /var/tmp/to_scwrl_944706917.seq -o /var/tmp/from_scwrl_944706917.pdb > /var/tmp/scwrl_944706917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_944706917.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_220118999.pdb -s /var/tmp/to_scwrl_220118999.seq -o /var/tmp/from_scwrl_220118999.pdb > /var/tmp/scwrl_220118999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220118999.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 122 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1985487712.pdb -s /var/tmp/to_scwrl_1985487712.seq -o /var/tmp/from_scwrl_1985487712.pdb > /var/tmp/scwrl_1985487712.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1985487712.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 126 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1415378656.pdb -s /var/tmp/to_scwrl_1415378656.seq -o /var/tmp/from_scwrl_1415378656.pdb > /var/tmp/scwrl_1415378656.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1415378656.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0302)T73.O and (T0302)D74.N only 0.000 apart, marking (T0302)D74.N as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_308313153.pdb -s /var/tmp/to_scwrl_308313153.seq -o /var/tmp/from_scwrl_308313153.pdb > /var/tmp/scwrl_308313153.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_308313153.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 WARNING: atoms too close: (T0302)L111.O and (T0302)M112.N only 0.000 apart, marking (T0302)M112.N as missing # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_700662088.pdb -s /var/tmp/to_scwrl_700662088.seq -o /var/tmp/from_scwrl_700662088.pdb > /var/tmp/scwrl_700662088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700662088.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1335153949.pdb -s /var/tmp/to_scwrl_1335153949.seq -o /var/tmp/from_scwrl_1335153949.pdb > /var/tmp/scwrl_1335153949.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1335153949.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1101730279.pdb -s /var/tmp/to_scwrl_1101730279.seq -o /var/tmp/from_scwrl_1101730279.pdb > /var/tmp/scwrl_1101730279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101730279.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1390289035.pdb -s /var/tmp/to_scwrl_1390289035.seq -o /var/tmp/from_scwrl_1390289035.pdb > /var/tmp/scwrl_1390289035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1390289035.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_770532653.pdb -s /var/tmp/to_scwrl_770532653.seq -o /var/tmp/from_scwrl_770532653.pdb > /var/tmp/scwrl_770532653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770532653.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2139349065.pdb -s /var/tmp/to_scwrl_2139349065.seq -o /var/tmp/from_scwrl_2139349065.pdb > /var/tmp/scwrl_2139349065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139349065.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1260741647.pdb -s /var/tmp/to_scwrl_1260741647.seq -o /var/tmp/from_scwrl_1260741647.pdb > /var/tmp/scwrl_1260741647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1260741647.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 127 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_2107706301.pdb -s /var/tmp/to_scwrl_2107706301.seq -o /var/tmp/from_scwrl_2107706301.pdb > /var/tmp/scwrl_2107706301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2107706301.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_407970578.pdb -s /var/tmp/to_scwrl_407970578.seq -o /var/tmp/from_scwrl_407970578.pdb > /var/tmp/scwrl_407970578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_407970578.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_342475587.pdb -s /var/tmp/to_scwrl_342475587.seq -o /var/tmp/from_scwrl_342475587.pdb > /var/tmp/scwrl_342475587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342475587.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_70684263.pdb -s /var/tmp/to_scwrl_70684263.seq -o /var/tmp/from_scwrl_70684263.pdb > /var/tmp/scwrl_70684263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70684263.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_318654057.pdb -s /var/tmp/to_scwrl_318654057.seq -o /var/tmp/from_scwrl_318654057.pdb > /var/tmp/scwrl_318654057.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_318654057.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_33213639.pdb -s /var/tmp/to_scwrl_33213639.seq -o /var/tmp/from_scwrl_33213639.pdb > /var/tmp/scwrl_33213639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_33213639.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1530951727.pdb -s /var/tmp/to_scwrl_1530951727.seq -o /var/tmp/from_scwrl_1530951727.pdb > /var/tmp/scwrl_1530951727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530951727.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1785757802.pdb -s /var/tmp/to_scwrl_1785757802.seq -o /var/tmp/from_scwrl_1785757802.pdb > /var/tmp/scwrl_1785757802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785757802.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_806019627.pdb -s /var/tmp/to_scwrl_806019627.seq -o /var/tmp/from_scwrl_806019627.pdb > /var/tmp/scwrl_806019627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_806019627.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_655763282.pdb -s /var/tmp/to_scwrl_655763282.seq -o /var/tmp/from_scwrl_655763282.pdb > /var/tmp/scwrl_655763282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_655763282.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_271347566.pdb -s /var/tmp/to_scwrl_271347566.seq -o /var/tmp/from_scwrl_271347566.pdb > /var/tmp/scwrl_271347566.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_271347566.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_115347924.pdb -s /var/tmp/to_scwrl_115347924.seq -o /var/tmp/from_scwrl_115347924.pdb > /var/tmp/scwrl_115347924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115347924.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0302 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_1584386834.pdb -s /var/tmp/to_scwrl_1584386834.seq -o /var/tmp/from_scwrl_1584386834.pdb > /var/tmp/scwrl_1584386834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1584386834.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 129 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 119 ; scwrl3 -i /var/tmp/to_scwrl_80322873.pdb -s /var/tmp/to_scwrl_80322873.seq -o /var/tmp/from_scwrl_80322873.pdb > /var/tmp/scwrl_80322873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80322873.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 26.371 sec, elapsed time= 266.046 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -201.583 shub_TS1 costs 0 real_cost = -193.421 panther2_TS1-scwrl costs 0 real_cost = -160.59 panther2_TS1 costs 0 real_cost = -159.985 nFOLD_TS5-scwrl costs 0 real_cost = 215.242 nFOLD_TS5 costs 0 real_cost = 271.569 nFOLD_TS4-scwrl costs 0 real_cost = 211.644 nFOLD_TS4 costs 0 real_cost = 282.582 nFOLD_TS3-scwrl costs 0 real_cost = -37.218 nFOLD_TS3 costs 0 real_cost = 7.04883 nFOLD_TS2-scwrl costs 0 real_cost = -90.0447 nFOLD_TS2 costs 0 real_cost = -90.0475 nFOLD_TS1-scwrl costs 0 real_cost = -222.567 nFOLD_TS1 costs 0 real_cost = -164.783 mGen-3D_TS1-scwrl costs 0 real_cost = -222.567 mGen-3D_TS1 costs 0 real_cost = -164.783 keasar-server_TS5-scwrl costs 0 real_cost = -162.706 keasar-server_TS5 costs 0 real_cost = -144.486 keasar-server_TS4-scwrl costs 0 real_cost = -185.926 keasar-server_TS4 costs 0 real_cost = -188.078 keasar-server_TS3-scwrl costs 0 real_cost = -153.998 keasar-server_TS3 costs 0 real_cost = -144.205 keasar-server_TS2-scwrl costs 0 real_cost = -181.735 keasar-server_TS2 costs 0 real_cost = -177.29 keasar-server_TS1-scwrl costs 0 real_cost = -169.636 keasar-server_TS1 costs 0 real_cost = -170.072 karypis.srv_TS5-scwrl costs 0 real_cost = -156.349 karypis.srv_TS5 costs 0 real_cost = -156.791 karypis.srv_TS4-scwrl costs 0 real_cost = -76.1929 karypis.srv_TS4 costs 0 real_cost = -76.1953 karypis.srv_TS3-scwrl costs 0 real_cost = -161.969 karypis.srv_TS3 costs 0 real_cost = -172.603 karypis.srv_TS2-scwrl costs 0 real_cost = -217.556 karypis.srv_TS2 costs 0 real_cost = -228.12 karypis.srv_TS1-scwrl costs 0 real_cost = -160.068 karypis.srv_TS1 costs 0 real_cost = -165.474 karypis.srv.4_TS5-scwrl costs 0 real_cost = 226.622 karypis.srv.4_TS5 costs 0 real_cost = 226.984 karypis.srv.4_TS4-scwrl costs 0 real_cost = 247.493 karypis.srv.4_TS4 costs 0 real_cost = 247.493 karypis.srv.4_TS3-scwrl costs 0 real_cost = 301.125 karypis.srv.4_TS3 costs 0 real_cost = 298.075 karypis.srv.4_TS2-scwrl costs 0 real_cost = 307.931 karypis.srv.4_TS2 costs 0 real_cost = 307.936 karypis.srv.4_TS1-scwrl costs 0 real_cost = 195.741 karypis.srv.4_TS1 costs 0 real_cost = 195.741 karypis.srv.2_TS5-scwrl costs 0 real_cost = -237.895 karypis.srv.2_TS5 costs 0 real_cost = -237.895 karypis.srv.2_TS4-scwrl costs 0 real_cost = -235.768 karypis.srv.2_TS4 costs 0 real_cost = -235.748 karypis.srv.2_TS3-scwrl costs 0 real_cost = -158.784 karypis.srv.2_TS3 costs 0 real_cost = -158.784 karypis.srv.2_TS2-scwrl costs 0 real_cost = -226.65 karypis.srv.2_TS2 costs 0 real_cost = -226.65 karypis.srv.2_TS1-scwrl costs 0 real_cost = -159.425 karypis.srv.2_TS1 costs 0 real_cost = -159.425 gtg_AL5-scwrl costs 0 real_cost = -146.256 gtg_AL5 costs 0 real_cost = -68.6837 gtg_AL4-scwrl costs 0 real_cost = 57.1566 gtg_AL4 costs 0 real_cost = 161.681 gtg_AL3-scwrl costs 0 real_cost = -215.628 gtg_AL3 costs 0 real_cost = -127.993 gtg_AL2-scwrl costs 0 real_cost = -219.009 gtg_AL2 costs 0 real_cost = -124.116 gtg_AL1-scwrl costs 0 real_cost = -210.948 gtg_AL1 costs 0 real_cost = -115.272 forecast-s_AL5-scwrl costs 0 real_cost = 91.2289 forecast-s_AL5 costs 0 real_cost = 137.79 forecast-s_AL4-scwrl costs 0 real_cost = -20.2725 forecast-s_AL4 costs 0 real_cost = -20.2725 forecast-s_AL3-scwrl costs 0 real_cost = -111.602 forecast-s_AL3 costs 0 real_cost = -69.9032 forecast-s_AL2-scwrl costs 0 real_cost = -136.262 forecast-s_AL2 costs 0 real_cost = -62.1897 forecast-s_AL1-scwrl costs 0 real_cost = -222.567 forecast-s_AL1 costs 0 real_cost = -140.82 beautshotbase_TS1-scwrl costs 0 real_cost = -198.264 beautshotbase_TS1 costs 0 real_cost = -205.289 beautshot_TS1-scwrl costs 0 real_cost = -210.411 beautshot_TS1 costs 0 real_cost = -206.425 Zhang-Server_TS5-scwrl costs 0 real_cost = -238.003 Zhang-Server_TS5 costs 0 real_cost = -240.705 Zhang-Server_TS4-scwrl costs 0 real_cost = -244.381 Zhang-Server_TS4 costs 0 real_cost = -245.723 Zhang-Server_TS3-scwrl costs 0 real_cost = -243.704 Zhang-Server_TS3 costs 0 real_cost = -245.818 Zhang-Server_TS2-scwrl costs 0 real_cost = -244.361 Zhang-Server_TS2 costs 0 real_cost = -248.201 Zhang-Server_TS1-scwrl costs 0 real_cost = -245.717 Zhang-Server_TS1 costs 0 real_cost = -244.642 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -141.331 UNI-EID_sfst_AL5 costs 0 real_cost = -52.3541 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -222.567 UNI-EID_sfst_AL4 costs 0 real_cost = -140.82 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -115.313 UNI-EID_sfst_AL3 costs 0 real_cost = -115.313 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -216.416 UNI-EID_sfst_AL2 costs 0 real_cost = -122.516 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -201.854 UNI-EID_sfst_AL1 costs 0 real_cost = -108.632 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -164.47 UNI-EID_expm_TS1 costs 0 real_cost = -164.466 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -141.331 UNI-EID_bnmx_TS5 costs 0 real_cost = -52.3541 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -222.567 UNI-EID_bnmx_TS4 costs 0 real_cost = -140.82 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -115.313 UNI-EID_bnmx_TS3 costs 0 real_cost = -115.313 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -216.416 UNI-EID_bnmx_TS2 costs 0 real_cost = -122.516 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -201.854 UNI-EID_bnmx_TS1 costs 0 real_cost = -108.632 SPARKS2_TS5-scwrl costs 0 real_cost = -104.535 SPARKS2_TS5 costs 0 real_cost = -108.611 SPARKS2_TS4-scwrl costs 0 real_cost = 57.5488 SPARKS2_TS4 costs 0 real_cost = 53.8153 SPARKS2_TS3-scwrl costs 0 real_cost = -175.369 SPARKS2_TS3 costs 0 real_cost = -177.028 SPARKS2_TS2-scwrl costs 0 real_cost = -216.019 SPARKS2_TS2 costs 0 real_cost = -218.146 SPARKS2_TS1-scwrl costs 0 real_cost = -233.806 SPARKS2_TS1 costs 0 real_cost = -241.384 SP4_TS5-scwrl costs 0 real_cost = 57.5488 SP4_TS5 costs 0 real_cost = 53.8153 SP4_TS4-scwrl costs 0 real_cost = -164.534 SP4_TS4 costs 0 real_cost = -162.325 SP4_TS3-scwrl costs 0 real_cost = -175.369 SP4_TS3 costs 0 real_cost = -177.028 SP4_TS2-scwrl costs 0 real_cost = -216.618 SP4_TS2 costs 0 real_cost = -218.624 SP4_TS1-scwrl costs 0 real_cost = -233.806 SP4_TS1 costs 0 real_cost = -241.384 SP3_TS5-scwrl costs 0 real_cost = 57.5488 SP3_TS5 costs 0 real_cost = 53.8153 SP3_TS4-scwrl costs 0 real_cost = -177.084 SP3_TS4 costs 0 real_cost = -173.517 SP3_TS3-scwrl costs 0 real_cost = -175.369 SP3_TS3 costs 0 real_cost = -177.028 SP3_TS2-scwrl costs 0 real_cost = -219.862 SP3_TS2 costs 0 real_cost = -212.814 SP3_TS1-scwrl costs 0 real_cost = -233.806 SP3_TS1 costs 0 real_cost = -241.384 SAM_T06_server_TS5-scwrl costs 0 real_cost = -169.196 SAM_T06_server_TS5 costs 0 real_cost = -170.566 SAM_T06_server_TS4-scwrl costs 0 real_cost = 102.296 SAM_T06_server_TS4 costs 0 real_cost = 82.2969 SAM_T06_server_TS3-scwrl costs 0 real_cost = -189.828 SAM_T06_server_TS3 costs 0 real_cost = -206.813 SAM_T06_server_TS2-scwrl costs 0 real_cost = -211.447 SAM_T06_server_TS2 costs 0 real_cost = -217.471 SAM_T06_server_TS1-scwrl costs 0 real_cost = -214.247 SAM_T06_server_TS1 costs 0 real_cost = -215.683 SAM-T99_AL5-scwrl costs 0 real_cost = -227.726 SAM-T99_AL5 costs 0 real_cost = -134.858 SAM-T99_AL4-scwrl costs 0 real_cost = -227.054 SAM-T99_AL4 costs 0 real_cost = -136.227 SAM-T99_AL3-scwrl costs 0 real_cost = -152.739 SAM-T99_AL3 costs 0 real_cost = -60.3064 SAM-T99_AL2-scwrl costs 0 real_cost = -195.208 SAM-T99_AL2 costs 0 real_cost = -115.823 SAM-T99_AL1-scwrl costs 0 real_cost = -199.054 SAM-T99_AL1 costs 0 real_cost = -107.032 SAM-T02_AL5-scwrl costs 0 real_cost = -115.313 SAM-T02_AL5 costs 0 real_cost = -115.313 SAM-T02_AL4-scwrl costs 0 real_cost = -110.232 SAM-T02_AL4 costs 0 real_cost = -110.232 SAM-T02_AL3-scwrl costs 0 real_cost = -204.556 SAM-T02_AL3 costs 0 real_cost = -120.99 SAM-T02_AL2-scwrl costs 0 real_cost = 62.3549 SAM-T02_AL2 costs 0 real_cost = 166.273 SAM-T02_AL1-scwrl costs 0 real_cost = -201.036 SAM-T02_AL1 costs 0 real_cost = -115.304 ROKKY_TS5-scwrl costs 0 real_cost = -233.544 ROKKY_TS5 costs 0 real_cost = -232.051 ROKKY_TS4-scwrl costs 0 real_cost = -192.094 ROKKY_TS4 costs 0 real_cost = -190.285 ROKKY_TS3-scwrl costs 0 real_cost = -143.323 ROKKY_TS3 costs 0 real_cost = -137.095 ROKKY_TS2-scwrl costs 0 real_cost = -162.131 ROKKY_TS2 costs 0 real_cost = -158.072 ROKKY_TS1-scwrl costs 0 real_cost = -218.601 ROKKY_TS1 costs 0 real_cost = -211.818 ROBETTA_TS5-scwrl costs 0 real_cost = -171.929 ROBETTA_TS5 costs 0 real_cost = -164.519 ROBETTA_TS4-scwrl costs 0 real_cost = -225.481 ROBETTA_TS4 costs 0 real_cost = -228.35 ROBETTA_TS3-scwrl costs 0 real_cost = -226.709 ROBETTA_TS3 costs 0 real_cost = -227.322 ROBETTA_TS2-scwrl costs 0 real_cost = -204.593 ROBETTA_TS2 costs 0 real_cost = -204.927 ROBETTA_TS1-scwrl costs 0 real_cost = -224.547 ROBETTA_TS1 costs 0 real_cost = -228.055 RAPTOR_TS5-scwrl costs 0 real_cost = -237.401 RAPTOR_TS5 costs 0 real_cost = -241.703 RAPTOR_TS4-scwrl costs 0 real_cost = -206.818 RAPTOR_TS4 costs 0 real_cost = -207.538 RAPTOR_TS3-scwrl costs 0 real_cost = -230.877 RAPTOR_TS3 costs 0 real_cost = -230.923 RAPTOR_TS2-scwrl costs 0 real_cost = -219.7 RAPTOR_TS2 costs 0 real_cost = -222.363 RAPTOR_TS1-scwrl costs 0 real_cost = -202.768 RAPTOR_TS1 costs 0 real_cost = -196.209 RAPTORESS_TS5-scwrl costs 0 real_cost = -234.105 RAPTORESS_TS5 costs 0 real_cost = -236.304 RAPTORESS_TS4-scwrl costs 0 real_cost = -198.775 RAPTORESS_TS4 costs 0 real_cost = -198.526 RAPTORESS_TS3-scwrl costs 0 real_cost = -222.216 RAPTORESS_TS3 costs 0 real_cost = -228.627 RAPTORESS_TS2-scwrl costs 0 real_cost = -221.637 RAPTORESS_TS2 costs 0 real_cost = -225.666 RAPTORESS_TS1-scwrl costs 0 real_cost = -206.8 RAPTORESS_TS1 costs 0 real_cost = -203.574 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -239.435 RAPTOR-ACE_TS5 costs 0 real_cost = -247.142 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -241.241 RAPTOR-ACE_TS4 costs 0 real_cost = -246.967 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -233.806 RAPTOR-ACE_TS3 costs 0 real_cost = -241.384 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -165.505 RAPTOR-ACE_TS2 costs 0 real_cost = -167.811 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -241.241 RAPTOR-ACE_TS1 costs 0 real_cost = -246.967 Pmodeller6_TS5-scwrl costs 0 real_cost = -223.802 Pmodeller6_TS5 costs 0 real_cost = -230.31 Pmodeller6_TS4-scwrl costs 0 real_cost = -223.802 Pmodeller6_TS4 costs 0 real_cost = -230.31 Pmodeller6_TS3-scwrl costs 0 real_cost = -223.802 Pmodeller6_TS3 costs 0 real_cost = -230.31 Pmodeller6_TS2-scwrl costs 0 real_cost = -225.793 Pmodeller6_TS2 costs 0 real_cost = -225.741 Pmodeller6_TS1-scwrl costs 0 real_cost = -212.293 Pmodeller6_TS1 costs 0 real_cost = -220.93 Phyre-2_TS5-scwrl costs 0 real_cost = -227.15 Phyre-2_TS5 costs 0 real_cost = -227.425 Phyre-2_TS4-scwrl costs 0 real_cost = -229.111 Phyre-2_TS4 costs 0 real_cost = -227.835 Phyre-2_TS3-scwrl costs 0 real_cost = -227.15 Phyre-2_TS3 costs 0 real_cost = -227.425 Phyre-2_TS2-scwrl costs 0 real_cost = -229.111 Phyre-2_TS2 costs 0 real_cost = -227.795 Phyre-2_TS1-scwrl costs 0 real_cost = -229.111 Phyre-2_TS1 costs 0 real_cost = -227.801 Phyre-1_TS1-scwrl costs 0 real_cost = -199.054 Phyre-1_TS1 costs 0 real_cost = -199.043 Pcons6_TS5-scwrl costs 0 real_cost = -215.735 Pcons6_TS5 costs 0 real_cost = -223.045 Pcons6_TS4-scwrl costs 0 real_cost = -225.793 Pcons6_TS4 costs 0 real_cost = -225.741 Pcons6_TS3-scwrl costs 0 real_cost = -220.424 Pcons6_TS3 costs 0 real_cost = -225.748 Pcons6_TS2-scwrl costs 0 real_cost = -223.802 Pcons6_TS2 costs 0 real_cost = -230.31 Pcons6_TS1-scwrl costs 0 real_cost = -223.802 Pcons6_TS1 costs 0 real_cost = -230.31 PROTINFO_TS5-scwrl costs 0 real_cost = -241.025 PROTINFO_TS5 costs 0 real_cost = -240.96 PROTINFO_TS4-scwrl costs 0 real_cost = -215.119 PROTINFO_TS4 costs 0 real_cost = -212.277 PROTINFO_TS3-scwrl costs 0 real_cost = -236.425 PROTINFO_TS3 costs 0 real_cost = -235.645 PROTINFO_TS2-scwrl costs 0 real_cost = -203.762 PROTINFO_TS2 costs 0 real_cost = -207.098 PROTINFO_TS1-scwrl costs 0 real_cost = -233.113 PROTINFO_TS1 costs 0 real_cost = -243.043 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -228.858 PROTINFO-AB_TS5 costs 0 real_cost = -220.833 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -226.287 PROTINFO-AB_TS4 costs 0 real_cost = -231.228 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -233.268 PROTINFO-AB_TS3 costs 0 real_cost = -226.807 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -241.025 PROTINFO-AB_TS2 costs 0 real_cost = -240.96 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -236.425 PROTINFO-AB_TS1 costs 0 real_cost = -235.645 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -195.657 NN_PUT_lab_TS1 costs 0 real_cost = -189.169 MetaTasser_TS1-scwrl costs 0 real_cost = -224.852 MetaTasser_TS1 costs 0 real_cost = -222.475 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -121.066 Ma-OPUS-server_TS5 costs 0 real_cost = -132.523 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -75.2956 Ma-OPUS-server_TS4 costs 0 real_cost = -67.7779 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -189.528 Ma-OPUS-server_TS3 costs 0 real_cost = -186.716 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -237.546 Ma-OPUS-server_TS2 costs 0 real_cost = -239.204 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -218.118 Ma-OPUS-server_TS1 costs 0 real_cost = -222.017 MIG_FROST_AL1-scwrl costs 0 real_cost = -211.099 MIG_FROST_AL1 costs 0 real_cost = -116.156 LOOPP_TS5-scwrl costs 0 real_cost = -208.182 LOOPP_TS5 costs 0 real_cost = -206.84 LOOPP_TS4-scwrl costs 0 real_cost = -130.256 LOOPP_TS4 costs 0 real_cost = -129.579 LOOPP_TS3-scwrl costs 0 real_cost = -190.21 LOOPP_TS3 costs 0 real_cost = -192.631 LOOPP_TS2-scwrl costs 0 real_cost = -213.153 LOOPP_TS2 costs 0 real_cost = -212.353 LOOPP_TS1-scwrl costs 0 real_cost = -195.657 LOOPP_TS1 costs 0 real_cost = -189.169 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = -142.394 Huber-Torda-Server_TS5 costs 0 real_cost = -142.414 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -141.188 Huber-Torda-Server_TS4 costs 0 real_cost = -74.9671 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -222.567 Huber-Torda-Server_TS3 costs 0 real_cost = -164.783 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -139.465 Huber-Torda-Server_TS2 costs 0 real_cost = -139.497 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -135.042 Huber-Torda-Server_TS1 costs 0 real_cost = -135.03 HHpred3_TS1-scwrl costs 0 real_cost = -251.086 HHpred3_TS1 costs 0 real_cost = -250.099 HHpred2_TS1-scwrl costs 0 real_cost = -251.086 HHpred2_TS1 costs 0 real_cost = -250.099 HHpred1_TS1-scwrl costs 0 real_cost = -240.821 HHpred1_TS1 costs 0 real_cost = -247.291 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -168.425 GeneSilicoMetaServer_TS5 costs 0 real_cost = -171.797 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -204.547 GeneSilicoMetaServer_TS4 costs 0 real_cost = -211.435 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -225.578 GeneSilicoMetaServer_TS3 costs 0 real_cost = -230.441 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -238.572 GeneSilicoMetaServer_TS2 costs 0 real_cost = -237.972 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -238.572 GeneSilicoMetaServer_TS1 costs 0 real_cost = -237.972 Frankenstein_TS4-scwrl costs 0 real_cost = -234.25 Frankenstein_TS4 costs 0 real_cost = -235.075 FUNCTION_TS5-scwrl costs 0 real_cost = -230.985 FUNCTION_TS5 costs 0 real_cost = -231.037 FUNCTION_TS4-scwrl costs 0 real_cost = -199.43 FUNCTION_TS4 costs 0 real_cost = -195.891 FUNCTION_TS3-scwrl costs 0 real_cost = -197.327 FUNCTION_TS3 costs 0 real_cost = -201.505 FUNCTION_TS2-scwrl costs 0 real_cost = -196.112 FUNCTION_TS2 costs 0 real_cost = -199 FUNCTION_TS1-scwrl costs 0 real_cost = -207.851 FUNCTION_TS1 costs 0 real_cost = -202.598 FUGUE_AL5-scwrl costs 0 real_cost = 217.19 FUGUE_AL5 costs 0 real_cost = 317.397 FUGUE_AL4-scwrl costs 0 real_cost = 31.2555 FUGUE_AL4 costs 0 real_cost = 107.203 FUGUE_AL3-scwrl costs 0 real_cost = -90.9417 FUGUE_AL3 costs 0 real_cost = 7.1289 FUGUE_AL2-scwrl costs 0 real_cost = -212.663 FUGUE_AL2 costs 0 real_cost = -137.999 FUGUE_AL1-scwrl costs 0 real_cost = -222.567 FUGUE_AL1 costs 0 real_cost = -140.82 FUGMOD_TS5-scwrl costs 0 real_cost = 212.36 FUGMOD_TS5 costs 0 real_cost = 213.241 FUGMOD_TS4-scwrl costs 0 real_cost = 18.7079 FUGMOD_TS4 costs 0 real_cost = 25.0935 FUGMOD_TS3-scwrl costs 0 real_cost = -55.1935 FUGMOD_TS3 costs 0 real_cost = -51.5436 FUGMOD_TS2-scwrl costs 0 real_cost = -242.968 FUGMOD_TS2 costs 0 real_cost = -247.046 FUGMOD_TS1-scwrl costs 0 real_cost = -222.671 FUGMOD_TS1 costs 0 real_cost = -239.502 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 238.408 FPSOLVER-SERVER_TS5 costs 0 real_cost = 238.142 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 245.162 FPSOLVER-SERVER_TS4 costs 0 real_cost = 246.227 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 240.839 FPSOLVER-SERVER_TS3 costs 0 real_cost = 242.612 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 261.746 FPSOLVER-SERVER_TS2 costs 0 real_cost = 262.674 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 218.261 FPSOLVER-SERVER_TS1 costs 0 real_cost = 221.996 FORTE2_AL5-scwrl costs 0 real_cost = 58.1826 FORTE2_AL5 costs 0 real_cost = 138.52 FORTE2_AL4-scwrl costs 0 real_cost = -178.552 FORTE2_AL4 costs 0 real_cost = -97.2381 FORTE2_AL3-scwrl costs 0 real_cost = -28.4781 FORTE2_AL3 costs 0 real_cost = -28.4781 FORTE2_AL2-scwrl costs 0 real_cost = -215.821 FORTE2_AL2 costs 0 real_cost = -120.755 FORTE2_AL1-scwrl costs 0 real_cost = -222.567 FORTE2_AL1 costs 0 real_cost = -140.82 FORTE1_AL5-scwrl costs 0 real_cost = 313.456 FORTE1_AL5 costs 0 real_cost = 313.456 FORTE1_AL4-scwrl costs 0 real_cost = -126.014 FORTE1_AL4 costs 0 real_cost = -47.9545 FORTE1_AL3-scwrl costs 0 real_cost = -4.9042 FORTE1_AL3 costs 0 real_cost = -4.9042 FORTE1_AL2-scwrl costs 0 real_cost = -215.821 FORTE1_AL2 costs 0 real_cost = -120.755 FORTE1_AL1-scwrl costs 0 real_cost = -222.567 FORTE1_AL1 costs 0 real_cost = -140.82 FOLDpro_TS5-scwrl costs 0 real_cost = 57.6005 FOLDpro_TS5 costs 0 real_cost = 63.0003 FOLDpro_TS4-scwrl costs 0 real_cost = -201.147 FOLDpro_TS4 costs 0 real_cost = -195.124 FOLDpro_TS3-scwrl costs 0 real_cost = 54.21 FOLDpro_TS3 costs 0 real_cost = 55.911 FOLDpro_TS2-scwrl costs 0 real_cost = -254.581 FOLDpro_TS2 costs 0 real_cost = -261.593 FOLDpro_TS1-scwrl costs 0 real_cost = -244.411 FOLDpro_TS1 costs 0 real_cost = -244.399 FAMS_TS5-scwrl costs 0 real_cost = -227.63 FAMS_TS5 costs 0 real_cost = -224.004 FAMS_TS4-scwrl costs 0 real_cost = -196.112 FAMS_TS4 costs 0 real_cost = -199 FAMS_TS3-scwrl costs 0 real_cost = -192.035 FAMS_TS3 costs 0 real_cost = -194.218 FAMS_TS2-scwrl costs 0 real_cost = -218.835 FAMS_TS2 costs 0 real_cost = -204.57 FAMS_TS1-scwrl costs 0 real_cost = -234.5 FAMS_TS1 costs 0 real_cost = -234.626 FAMSD_TS5-scwrl costs 0 real_cost = -155.449 FAMSD_TS5 costs 0 real_cost = -144.949 FAMSD_TS4-scwrl costs 0 real_cost = -201.641 FAMSD_TS4 costs 0 real_cost = -205.026 FAMSD_TS3-scwrl costs 0 real_cost = -193.582 FAMSD_TS3 costs 0 real_cost = -190.123 FAMSD_TS2-scwrl costs 0 real_cost = -206.562 FAMSD_TS2 costs 0 real_cost = -194.338 FAMSD_TS1-scwrl costs 0 real_cost = -205.648 FAMSD_TS1 costs 0 real_cost = -209.952 Distill_TS5-scwrl costs 0 real_cost = 228.8 Distill_TS4-scwrl costs 0 real_cost = 226.235 Distill_TS3-scwrl costs 0 real_cost = 222.092 Distill_TS2-scwrl costs 0 real_cost = 233.899 Distill_TS1-scwrl costs 0 real_cost = 221.777 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -223.232 CaspIta-FOX_TS5 costs 0 real_cost = -221.589 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -186.666 CaspIta-FOX_TS4 costs 0 real_cost = -198.431 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -189.722 CaspIta-FOX_TS3 costs 0 real_cost = -183.546 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -204.443 CaspIta-FOX_TS2 costs 0 real_cost = -203.675 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -161.589 CaspIta-FOX_TS1 costs 0 real_cost = -163.922 CPHmodels_TS1-scwrl costs 0 real_cost = -178.225 CPHmodels_TS1 costs 0 real_cost = -190.187 CIRCLE_TS5-scwrl costs 0 real_cost = -192.035 CIRCLE_TS5 costs 0 real_cost = -194.218 CIRCLE_TS4-scwrl costs 0 real_cost = -218.835 CIRCLE_TS4 costs 0 real_cost = -204.57 CIRCLE_TS3-scwrl costs 0 real_cost = -206.562 CIRCLE_TS3 costs 0 real_cost = -194.338 CIRCLE_TS2-scwrl costs 0 real_cost = -227.63 CIRCLE_TS2 costs 0 real_cost = -224.004 CIRCLE_TS1-scwrl costs 0 real_cost = -224.319 CIRCLE_TS1 costs 0 real_cost = -224.869 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -198.34 Bilab-ENABLE_TS5 costs 0 real_cost = -198.343 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -209.485 Bilab-ENABLE_TS4 costs 0 real_cost = -209.485 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -223.092 Bilab-ENABLE_TS3 costs 0 real_cost = -223.467 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -215.882 Bilab-ENABLE_TS2 costs 0 real_cost = -215.144 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -230.223 Bilab-ENABLE_TS1 costs 0 real_cost = -230.223 BayesHH_TS1-scwrl costs 0 real_cost = -239.097 BayesHH_TS1 costs 0 real_cost = -236.133 ABIpro_TS5-scwrl costs 0 real_cost = 177.665 ABIpro_TS5 costs 0 real_cost = 177.665 ABIpro_TS4-scwrl costs 0 real_cost = 141.238 ABIpro_TS4 costs 0 real_cost = 141.24 ABIpro_TS3-scwrl costs 0 real_cost = 173.284 ABIpro_TS3 costs 0 real_cost = 173.284 ABIpro_TS2-scwrl costs 0 real_cost = 186.371 ABIpro_TS2 costs 0 real_cost = 186.371 ABIpro_TS1-scwrl costs 0 real_cost = 171.813 ABIpro_TS1 costs 0 real_cost = 172.27 3Dpro_TS5-scwrl costs 0 real_cost = -169.736 3Dpro_TS5 costs 0 real_cost = -169.474 3Dpro_TS4-scwrl costs 0 real_cost = 73.2689 3Dpro_TS4 costs 0 real_cost = 66.5867 3Dpro_TS3-scwrl costs 0 real_cost = 37.97 3Dpro_TS3 costs 0 real_cost = 38.8855 3Dpro_TS2-scwrl costs 0 real_cost = -241.798 3Dpro_TS2 costs 0 real_cost = -238.716 3Dpro_TS1-scwrl costs 0 real_cost = -242.731 3Dpro_TS1 costs 0 real_cost = -242.011 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -161.161 3D-JIGSAW_TS5 costs 0 real_cost = -148.534 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -164.951 3D-JIGSAW_TS4 costs 0 real_cost = -159.466 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -223.602 3D-JIGSAW_TS3 costs 0 real_cost = -223.176 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -192.813 3D-JIGSAW_TS2 costs 0 real_cost = -183.689 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -180.954 3D-JIGSAW_TS1 costs 0 real_cost = -187.726 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -199.243 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -202.731 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -184.998 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -194.357 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -193.917 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -207.446 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -198.318 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -214.894 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -176.064 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -188.837 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -163.948 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -174.987 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -215.153 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -215.196 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -180.09 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -180.075 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -133.793 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -143.159 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -168.285 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -168.286 T0302.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -234.044 T0302.try2-opt2.pdb.gz costs 0 real_cost = -234.634 T0302.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -232.139 T0302.try2-opt1.pdb.gz costs 0 real_cost = -235.089 T0302.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -231.66 T0302.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -233.507 T0302.try1-opt2.pdb.gz costs 0 real_cost = -233.694 T0302.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -232.947 T0302.try1-opt1.pdb.gz costs 0 real_cost = -226.26 T0302.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -226.308 ../model5.ts-submitted costs 0 real_cost = 78.3273 ../model4.ts-submitted costs 0 real_cost = -207.387 ../model3.ts-submitted costs 0 real_cost = -211.417 ../model2.ts-submitted costs 0 real_cost = -233.704 ../model1.ts-submitted costs 0 real_cost = -234.831 align5 costs 0 real_cost = -13.7808 align4 costs 0 real_cost = -95.2828 align3 costs 0 real_cost = 78.2216 align2 costs 0 real_cost = -212.24 align1 costs 0 real_cost = -211.713 T0302.try1-opt2.pdb costs 0 real_cost = -233.703 model5-scwrl costs 0 real_cost = 91.6559 model5.ts-submitted costs 0 real_cost = 78.3273 model4-scwrl costs 0 real_cost = -192.453 model4.ts-submitted costs 0 real_cost = -207.387 model3-scwrl costs 0 real_cost = -207.174 model3.ts-submitted costs 0 real_cost = -211.417 model2-scwrl costs 0 real_cost = -233.699 model2.ts-submitted costs 0 real_cost = -233.704 model1-scwrl costs 0 real_cost = -231.935 model1.ts-submitted costs 0 real_cost = -234.819 T0302_1.real.pdb costs 0 real_cost = -888.2 # command:CPU_time= 357.335 sec, elapsed time= 597.509 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty