# TARGET T0302 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0302.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 386 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.001 0.006 0.885 0.003 0.003 0.004 0.001 0.001 0.002 0.056 0.019 0.002 0.020 2 M 0.001 0.019 0.829 0.001 0.003 0.005 0.001 0.001 0.003 0.076 0.020 0.030 0.013 3 V 0.001 0.043 0.792 0.001 0.001 0.005 0.001 0.001 0.004 0.110 0.014 0.009 0.020 4 S 0.001 0.014 0.924 0.001 0.001 0.004 0.001 0.001 0.001 0.044 0.002 0.002 0.010 5 P 0.001 0.003 0.160 0.001 0.047 0.619 0.001 0.001 0.001 0.062 0.105 0.001 0.003 6 E 0.001 0.002 0.063 0.001 0.104 0.706 0.001 0.001 0.001 0.031 0.089 0.002 0.002 7 E 0.001 0.003 0.045 0.001 0.121 0.774 0.001 0.001 0.001 0.018 0.032 0.002 0.004 8 A 0.001 0.006 0.067 0.001 0.056 0.821 0.001 0.001 0.001 0.016 0.021 0.001 0.009 9 V 0.001 0.012 0.069 0.003 0.034 0.765 0.001 0.001 0.010 0.027 0.063 0.005 0.007 10 K 0.001 0.009 0.094 0.001 0.032 0.543 0.001 0.001 0.005 0.068 0.232 0.004 0.009 11 W 0.001 0.006 0.221 0.002 0.023 0.262 0.001 0.001 0.002 0.131 0.344 0.001 0.007 12 G 0.001 0.009 0.393 0.001 0.023 0.129 0.001 0.001 0.002 0.154 0.284 0.003 0.002 13 E 0.001 0.016 0.380 0.001 0.012 0.084 0.001 0.001 0.002 0.405 0.089 0.006 0.006 14 S 0.001 0.049 0.580 0.001 0.009 0.159 0.001 0.001 0.005 0.131 0.025 0.004 0.038 15 F 0.001 0.002 0.010 0.001 0.017 0.950 0.001 0.001 0.001 0.005 0.015 0.001 0.001 16 D 0.001 0.001 0.001 0.001 0.031 0.959 0.001 0.001 0.001 0.001 0.007 0.001 0.001 17 K 0.001 0.001 0.001 0.001 0.050 0.939 0.001 0.001 0.001 0.001 0.007 0.001 0.001 18 L 0.001 0.001 0.003 0.001 0.068 0.907 0.001 0.001 0.001 0.003 0.017 0.001 0.001 19 L 0.001 0.003 0.008 0.001 0.037 0.799 0.001 0.001 0.001 0.006 0.144 0.001 0.001 20 S 0.001 0.006 0.030 0.001 0.017 0.449 0.001 0.001 0.001 0.040 0.457 0.001 0.001 21 H 0.001 0.001 0.526 0.001 0.001 0.050 0.001 0.001 0.001 0.409 0.012 0.001 0.001 22 R 0.001 0.001 0.021 0.001 0.035 0.722 0.001 0.001 0.001 0.034 0.187 0.001 0.001 23 D 0.001 0.002 0.014 0.001 0.037 0.731 0.001 0.001 0.001 0.023 0.192 0.001 0.001 24 G 0.001 0.002 0.034 0.001 0.028 0.894 0.001 0.001 0.001 0.018 0.021 0.001 0.001 25 L 0.001 0.001 0.004 0.001 0.003 0.988 0.001 0.001 0.001 0.001 0.004 0.001 0.001 26 E 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 27 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 28 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 31 F 0.001 0.001 0.001 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.010 0.001 0.001 32 L 0.001 0.001 0.005 0.001 0.003 0.931 0.001 0.001 0.001 0.005 0.055 0.001 0.001 33 K 0.001 0.001 0.017 0.001 0.014 0.713 0.001 0.001 0.001 0.016 0.239 0.001 0.001 34 T 0.001 0.001 0.041 0.001 0.023 0.508 0.001 0.001 0.001 0.073 0.354 0.001 0.001 35 E 0.001 0.002 0.111 0.001 0.036 0.406 0.001 0.001 0.001 0.117 0.325 0.001 0.001 36 F 0.001 0.011 0.233 0.001 0.027 0.350 0.001 0.001 0.001 0.140 0.236 0.001 0.002 37 S 0.001 0.006 0.317 0.001 0.021 0.491 0.001 0.001 0.001 0.080 0.078 0.001 0.004 38 E 0.001 0.001 0.027 0.001 0.024 0.894 0.001 0.001 0.001 0.019 0.035 0.001 0.001 39 E 0.001 0.001 0.012 0.001 0.022 0.915 0.001 0.001 0.001 0.011 0.037 0.001 0.001 40 N 0.001 0.001 0.016 0.001 0.011 0.939 0.001 0.001 0.001 0.009 0.022 0.001 0.002 41 I 0.001 0.001 0.005 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.003 0.001 0.001 42 E 0.001 0.001 0.005 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 43 F 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 44 W 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 47 C 0.001 0.001 0.004 0.001 0.002 0.984 0.001 0.001 0.001 0.001 0.006 0.001 0.001 48 E 0.001 0.001 0.004 0.001 0.021 0.943 0.001 0.001 0.001 0.003 0.025 0.001 0.001 49 D 0.001 0.001 0.010 0.001 0.040 0.807 0.001 0.001 0.001 0.015 0.122 0.002 0.003 50 F 0.001 0.001 0.061 0.001 0.088 0.660 0.001 0.001 0.001 0.029 0.152 0.001 0.006 51 K 0.001 0.022 0.218 0.001 0.047 0.458 0.001 0.001 0.004 0.074 0.157 0.010 0.007 52 K 0.001 0.010 0.260 0.002 0.051 0.231 0.001 0.001 0.002 0.122 0.289 0.004 0.028 53 S 0.001 0.008 0.443 0.001 0.027 0.097 0.001 0.001 0.003 0.181 0.220 0.008 0.010 54 K 0.001 0.022 0.443 0.001 0.007 0.043 0.001 0.001 0.001 0.394 0.079 0.005 0.006 55 G 0.001 0.005 0.841 0.001 0.001 0.016 0.001 0.001 0.001 0.125 0.007 0.001 0.003 56 P 0.001 0.001 0.041 0.001 0.035 0.806 0.001 0.001 0.001 0.024 0.092 0.001 0.001 57 Q 0.001 0.001 0.008 0.001 0.012 0.943 0.001 0.001 0.001 0.006 0.029 0.001 0.001 58 Q 0.001 0.001 0.009 0.001 0.016 0.960 0.001 0.001 0.001 0.005 0.009 0.001 0.001 59 I 0.001 0.001 0.021 0.001 0.005 0.961 0.001 0.001 0.001 0.004 0.006 0.001 0.001 60 H 0.001 0.001 0.009 0.001 0.001 0.981 0.001 0.001 0.001 0.002 0.005 0.001 0.001 61 L 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.002 0.003 0.001 0.001 62 K 0.001 0.001 0.003 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 63 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 66 I 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 67 Y 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 68 E 0.001 0.001 0.001 0.001 0.013 0.971 0.001 0.001 0.001 0.001 0.013 0.001 0.001 69 K 0.001 0.001 0.001 0.001 0.022 0.931 0.001 0.001 0.001 0.005 0.040 0.001 0.001 70 F 0.001 0.001 0.008 0.001 0.040 0.835 0.001 0.001 0.001 0.007 0.107 0.001 0.001 71 I 0.001 0.028 0.152 0.001 0.022 0.539 0.001 0.006 0.016 0.084 0.141 0.002 0.007 72 Q 0.001 0.013 0.676 0.006 0.019 0.060 0.001 0.001 0.006 0.146 0.064 0.006 0.004 73 T 0.001 0.002 0.046 0.002 0.034 0.020 0.001 0.001 0.001 0.112 0.783 0.001 0.001 74 D 0.001 0.001 0.059 0.002 0.018 0.003 0.001 0.001 0.001 0.052 0.864 0.001 0.001 75 A 0.001 0.013 0.743 0.002 0.010 0.002 0.001 0.001 0.006 0.172 0.034 0.011 0.007 76 P 0.001 0.026 0.662 0.009 0.016 0.005 0.001 0.001 0.022 0.128 0.066 0.004 0.060 77 K 0.002 0.012 0.439 0.004 0.019 0.010 0.002 0.001 0.069 0.246 0.026 0.156 0.015 78 E 0.004 0.026 0.512 0.003 0.010 0.013 0.006 0.002 0.095 0.051 0.012 0.004 0.260 79 V 0.010 0.045 0.369 0.006 0.005 0.011 0.013 0.002 0.155 0.065 0.008 0.270 0.041 80 N 0.005 0.046 0.606 0.002 0.001 0.007 0.004 0.001 0.073 0.019 0.005 0.010 0.221 81 L 0.001 0.025 0.779 0.002 0.004 0.017 0.001 0.001 0.018 0.081 0.026 0.034 0.011 82 D 0.001 0.003 0.816 0.001 0.004 0.048 0.001 0.001 0.005 0.084 0.017 0.001 0.021 83 F 0.001 0.001 0.006 0.001 0.030 0.909 0.001 0.001 0.001 0.013 0.041 0.001 0.001 84 H 0.001 0.001 0.005 0.001 0.026 0.929 0.001 0.001 0.001 0.005 0.033 0.001 0.001 85 T 0.001 0.001 0.003 0.001 0.012 0.970 0.001 0.001 0.001 0.002 0.011 0.001 0.001 86 K 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 88 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 89 I 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 90 T 0.001 0.001 0.001 0.001 0.005 0.984 0.001 0.001 0.001 0.001 0.010 0.001 0.001 91 N 0.001 0.001 0.001 0.001 0.011 0.925 0.001 0.001 0.001 0.002 0.060 0.001 0.001 92 S 0.001 0.001 0.008 0.001 0.025 0.798 0.001 0.001 0.001 0.007 0.161 0.001 0.001 93 I 0.001 0.009 0.168 0.001 0.025 0.495 0.001 0.001 0.003 0.102 0.195 0.001 0.001 94 T 0.001 0.013 0.328 0.002 0.028 0.157 0.001 0.001 0.003 0.211 0.256 0.001 0.002 95 Q 0.001 0.004 0.567 0.001 0.004 0.015 0.001 0.001 0.003 0.373 0.031 0.001 0.001 96 P 0.001 0.017 0.777 0.001 0.012 0.018 0.001 0.001 0.003 0.119 0.049 0.001 0.003 97 T 0.001 0.027 0.699 0.001 0.012 0.039 0.001 0.001 0.010 0.176 0.030 0.002 0.004 98 L 0.001 0.004 0.092 0.001 0.102 0.589 0.001 0.001 0.004 0.079 0.128 0.001 0.001 99 H 0.001 0.007 0.071 0.001 0.087 0.612 0.001 0.001 0.003 0.056 0.160 0.001 0.002 100 S 0.001 0.015 0.075 0.001 0.067 0.698 0.001 0.001 0.005 0.048 0.089 0.001 0.002 101 F 0.001 0.001 0.033 0.001 0.010 0.933 0.001 0.001 0.001 0.009 0.013 0.001 0.001 102 D 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 103 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 104 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 105 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 S 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 107 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 108 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 109 Y 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 110 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 111 L 0.001 0.001 0.001 0.001 0.001 0.983 0.001 0.001 0.001 0.001 0.014 0.001 0.001 112 M 0.001 0.001 0.006 0.001 0.004 0.927 0.001 0.001 0.001 0.008 0.055 0.001 0.001 113 E 0.001 0.001 0.025 0.001 0.017 0.637 0.001 0.001 0.001 0.015 0.303 0.001 0.001 114 Q 0.001 0.001 0.045 0.001 0.021 0.443 0.001 0.001 0.001 0.093 0.397 0.001 0.001 115 D 0.001 0.003 0.171 0.001 0.037 0.280 0.001 0.001 0.001 0.162 0.346 0.001 0.001 116 S 0.001 0.017 0.204 0.001 0.069 0.341 0.001 0.001 0.004 0.119 0.243 0.001 0.003 117 Y 0.001 0.011 0.199 0.001 0.053 0.499 0.001 0.001 0.003 0.142 0.087 0.002 0.003 118 T 0.001 0.005 0.096 0.001 0.107 0.655 0.001 0.001 0.002 0.046 0.083 0.001 0.003 119 R 0.001 0.003 0.047 0.001 0.101 0.717 0.001 0.001 0.002 0.029 0.096 0.002 0.002 120 F 0.001 0.004 0.046 0.001 0.160 0.602 0.001 0.001 0.001 0.033 0.149 0.001 0.003 121 L 0.001 0.009 0.074 0.001 0.097 0.542 0.001 0.001 0.002 0.045 0.224 0.003 0.003 122 K 0.001 0.005 0.124 0.001 0.034 0.523 0.001 0.001 0.001 0.063 0.243 0.002 0.004 123 S 0.001 0.001 0.284 0.001 0.008 0.575 0.001 0.001 0.001 0.104 0.024 0.001 0.002 124 D 0.001 0.001 0.008 0.001 0.021 0.935 0.001 0.001 0.001 0.005 0.031 0.001 0.001 125 I 0.001 0.001 0.003 0.001 0.016 0.946 0.001 0.001 0.001 0.003 0.031 0.001 0.001 126 Y 0.001 0.001 0.004 0.001 0.017 0.960 0.001 0.001 0.001 0.002 0.015 0.001 0.001 127 L 0.001 0.001 0.003 0.001 0.020 0.964 0.001 0.001 0.001 0.002 0.010 0.001 0.001 128 D 0.001 0.001 0.004 0.001 0.035 0.929 0.001 0.001 0.001 0.003 0.027 0.001 0.001 129 L 0.001 0.001 0.006 0.001 0.055 0.885 0.001 0.001 0.001 0.004 0.047 0.001 0.001 130 M 0.001 0.003 0.034 0.001 0.027 0.776 0.001 0.001 0.001 0.027 0.127 0.001 0.002 131 E 0.001 0.003 0.127 0.001 0.022 0.408 0.001 0.001 0.001 0.034 0.401 0.001 0.002 132 G 0.001 0.001 0.762 0.001 0.007 0.051 0.001 0.001 0.001 0.130 0.046 0.001 0.002