# TARGET T0302 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0302.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 386 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.199 0.204 0.220 0.170 0.106 0.026 0.029 0.017 0.018 0.010 0.001 2 M 0.139 0.260 0.325 0.088 0.090 0.029 0.028 0.009 0.024 0.007 0.001 3 V 0.085 0.284 0.491 0.058 0.025 0.038 0.002 0.001 0.013 0.001 0.001 4 S 0.016 0.201 0.597 0.002 0.074 0.019 0.006 0.001 0.071 0.014 0.001 5 P 0.704 0.004 0.223 0.022 0.001 0.011 0.001 0.001 0.001 0.001 0.032 6 E 0.787 0.019 0.096 0.065 0.007 0.009 0.005 0.007 0.003 0.002 0.001 7 E 0.700 0.069 0.124 0.071 0.013 0.009 0.002 0.002 0.010 0.001 0.001 8 A 0.711 0.054 0.148 0.044 0.009 0.018 0.005 0.003 0.005 0.002 0.001 9 V 0.683 0.109 0.056 0.111 0.013 0.014 0.002 0.001 0.009 0.001 0.001 10 K 0.375 0.170 0.168 0.155 0.063 0.020 0.021 0.004 0.021 0.003 0.001 11 W 0.314 0.063 0.265 0.199 0.022 0.040 0.051 0.013 0.026 0.005 0.001 12 G 0.265 0.062 0.257 0.061 0.079 0.014 0.038 0.092 0.010 0.121 0.001 13 E 0.535 0.065 0.235 0.093 0.022 0.021 0.013 0.008 0.003 0.005 0.001 14 S 0.179 0.190 0.462 0.013 0.070 0.044 0.001 0.001 0.033 0.005 0.001 15 F 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 D 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 K 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.972 0.001 0.002 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 L 0.829 0.005 0.017 0.137 0.001 0.004 0.002 0.001 0.002 0.001 0.001 20 S 0.235 0.015 0.082 0.619 0.005 0.019 0.011 0.007 0.004 0.002 0.001 21 H 0.009 0.057 0.584 0.012 0.013 0.135 0.006 0.001 0.182 0.002 0.001 22 R 0.957 0.001 0.005 0.029 0.001 0.002 0.004 0.003 0.001 0.001 0.001 23 D 0.929 0.001 0.004 0.059 0.001 0.001 0.004 0.001 0.001 0.001 0.001 24 G 0.918 0.001 0.002 0.062 0.001 0.001 0.002 0.010 0.001 0.001 0.001 25 L 0.991 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 F 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 F 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.972 0.001 0.002 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 K 0.942 0.002 0.006 0.045 0.001 0.002 0.002 0.001 0.001 0.001 0.001 34 T 0.826 0.021 0.023 0.115 0.005 0.005 0.002 0.001 0.002 0.001 0.001 35 E 0.739 0.027 0.045 0.155 0.005 0.009 0.010 0.002 0.006 0.001 0.001 36 F 0.584 0.038 0.077 0.161 0.018 0.023 0.050 0.013 0.023 0.012 0.001 37 S 0.765 0.021 0.079 0.064 0.011 0.022 0.016 0.009 0.005 0.007 0.001 38 E 0.917 0.012 0.017 0.038 0.004 0.004 0.002 0.003 0.001 0.002 0.001 39 E 0.950 0.007 0.018 0.018 0.001 0.002 0.002 0.001 0.001 0.001 0.001 40 N 0.951 0.003 0.005 0.032 0.001 0.003 0.002 0.001 0.001 0.001 0.001 41 I 0.971 0.011 0.008 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 42 E 0.994 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 F 0.990 0.002 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 W 0.990 0.003 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 I 0.990 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.960 0.006 0.006 0.023 0.002 0.002 0.001 0.001 0.001 0.001 0.001 47 C 0.966 0.003 0.003 0.023 0.001 0.002 0.001 0.001 0.001 0.001 0.001 48 E 0.985 0.001 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 D 0.903 0.002 0.002 0.085 0.001 0.002 0.002 0.001 0.001 0.001 0.001 50 F 0.610 0.017 0.031 0.320 0.002 0.007 0.007 0.002 0.004 0.001 0.001 51 K 0.723 0.038 0.113 0.068 0.006 0.014 0.029 0.002 0.006 0.001 0.001 52 K 0.530 0.029 0.062 0.278 0.011 0.022 0.029 0.023 0.013 0.003 0.001 53 S 0.108 0.122 0.587 0.062 0.021 0.058 0.013 0.003 0.023 0.002 0.001 54 K 0.243 0.128 0.210 0.321 0.038 0.031 0.009 0.002 0.015 0.001 0.001 55 G 0.030 0.060 0.380 0.007 0.229 0.008 0.011 0.011 0.029 0.235 0.001 56 P 0.914 0.001 0.045 0.026 0.001 0.004 0.001 0.001 0.001 0.001 0.006 57 Q 0.896 0.008 0.018 0.064 0.002 0.005 0.004 0.003 0.001 0.001 0.001 58 Q 0.923 0.009 0.016 0.038 0.002 0.004 0.002 0.002 0.003 0.001 0.001 59 I 0.960 0.006 0.011 0.014 0.001 0.004 0.001 0.001 0.002 0.001 0.001 60 H 0.985 0.002 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 L 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 K 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 Y 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 K 0.952 0.003 0.001 0.043 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 F 0.919 0.004 0.009 0.055 0.001 0.004 0.003 0.001 0.004 0.001 0.001 71 I 0.766 0.040 0.036 0.138 0.003 0.010 0.002 0.001 0.005 0.001 0.001 72 Q 0.373 0.117 0.233 0.115 0.064 0.040 0.017 0.005 0.025 0.011 0.001 73 T 0.732 0.014 0.148 0.088 0.004 0.007 0.002 0.001 0.002 0.002 0.001 74 D 0.175 0.007 0.025 0.568 0.005 0.018 0.119 0.067 0.014 0.002 0.001 75 A 0.022 0.111 0.675 0.002 0.029 0.028 0.028 0.001 0.099 0.004 0.001 76 P 0.421 0.004 0.355 0.075 0.001 0.020 0.001 0.001 0.001 0.001 0.124 77 K 0.047 0.530 0.214 0.019 0.128 0.013 0.017 0.003 0.029 0.002 0.001 78 E 0.059 0.128 0.699 0.014 0.002 0.067 0.003 0.001 0.018 0.001 0.009 79 V 0.080 0.588 0.156 0.034 0.038 0.054 0.003 0.001 0.046 0.001 0.001 80 N 0.025 0.137 0.305 0.035 0.014 0.309 0.087 0.003 0.082 0.002 0.002 81 L 0.090 0.370 0.307 0.113 0.043 0.045 0.005 0.001 0.024 0.001 0.001 82 D 0.042 0.081 0.733 0.008 0.032 0.070 0.005 0.001 0.017 0.010 0.001 83 F 0.957 0.001 0.004 0.023 0.001 0.001 0.005 0.006 0.001 0.001 0.001 84 H 0.974 0.001 0.004 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 T 0.975 0.002 0.003 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 K 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 V 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 I 0.984 0.002 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 T 0.963 0.006 0.004 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 N 0.861 0.009 0.016 0.100 0.004 0.003 0.004 0.002 0.001 0.001 0.001 92 S 0.493 0.016 0.032 0.401 0.004 0.018 0.022 0.004 0.010 0.001 0.001 93 I 0.316 0.129 0.235 0.221 0.013 0.046 0.015 0.003 0.020 0.001 0.001 94 T 0.361 0.068 0.110 0.299 0.038 0.031 0.056 0.013 0.015 0.011 0.001 95 Q 0.042 0.212 0.387 0.005 0.032 0.027 0.044 0.001 0.249 0.002 0.001 96 P 0.080 0.003 0.847 0.007 0.001 0.020 0.001 0.001 0.001 0.001 0.043 97 T 0.057 0.178 0.558 0.017 0.057 0.085 0.004 0.002 0.037 0.004 0.001 98 L 0.887 0.018 0.036 0.035 0.003 0.009 0.005 0.002 0.003 0.002 0.001 99 H 0.879 0.014 0.017 0.076 0.003 0.005 0.003 0.001 0.002 0.001 0.001 100 S 0.852 0.013 0.017 0.091 0.006 0.009 0.003 0.002 0.006 0.001 0.001 101 F 0.957 0.003 0.009 0.018 0.001 0.005 0.003 0.002 0.002 0.001 0.001 102 D 0.978 0.002 0.004 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 103 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 V 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 Q 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 L 0.974 0.001 0.001 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 M 0.921 0.001 0.005 0.064 0.001 0.001 0.003 0.003 0.001 0.001 0.001 113 E 0.865 0.005 0.023 0.081 0.001 0.010 0.009 0.002 0.002 0.002 0.001 114 Q 0.661 0.031 0.055 0.206 0.010 0.016 0.010 0.005 0.004 0.002 0.001 115 D 0.382 0.063 0.164 0.211 0.028 0.066 0.044 0.006 0.035 0.003 0.001 116 S 0.613 0.041 0.062 0.199 0.020 0.021 0.015 0.013 0.012 0.004 0.001 117 Y 0.685 0.064 0.100 0.064 0.017 0.026 0.017 0.005 0.020 0.003 0.001 118 T 0.909 0.008 0.038 0.032 0.002 0.005 0.002 0.001 0.001 0.002 0.001 119 R 0.898 0.008 0.019 0.053 0.002 0.006 0.007 0.003 0.002 0.001 0.001 120 F 0.828 0.017 0.032 0.092 0.003 0.012 0.007 0.002 0.005 0.001 0.001 121 L 0.664 0.060 0.123 0.103 0.006 0.022 0.010 0.003 0.007 0.001 0.001 122 K 0.444 0.079 0.145 0.233 0.022 0.034 0.018 0.006 0.014 0.006 0.001 123 S 0.304 0.106 0.417 0.026 0.091 0.019 0.005 0.003 0.016 0.013 0.001 124 D 0.976 0.001 0.002 0.014 0.001 0.001 0.003 0.003 0.001 0.001 0.001 125 I 0.983 0.001 0.002 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 126 Y 0.983 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 L 0.991 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 D 0.986 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 L 0.926 0.002 0.003 0.068 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 M 0.763 0.016 0.032 0.173 0.002 0.005 0.002 0.002 0.004 0.001 0.001 131 E 0.399 0.037 0.123 0.332 0.015 0.016 0.047 0.011 0.012 0.008 0.001 132 G 0.187 0.037 0.184 0.037 0.082 0.007 0.045 0.202 0.006 0.212 0.001