% SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 07/18/05_14:54:13 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0302.t06-100-30-bys Host: orcas.cse.ucsc.edu Thu May 25 10:19:58 2006 % bort Dir: /projects/compbio/experiments/protein-predict/casp7/T0302 % --------------------------------------------------------------------- % Inserted Files: % Database Files: /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.byss % MODLIBMOD T0302.t06-100-30-bys T0302.t06-100-30-bys model number 1 % Calibration data for 5042 database sequences % 1364 of 5042 scores > calibrate_threshold (0) used. trackmod T0302.t06.w0.5.mod,T0302.t06.bys.mod trackcoeff 1.0,0.3 alphabet protein,BYS lambda 2.225773 tau 0.730592 sw 2 dpstyle 0 jumpinprob 1.000000 jumpoutprob 1.000000 subtractnull 4 FIMmethodscore -6 insertmethodscore 0 adjust_score 2 ENDMODLIBMOD