# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fqiA 147 3.12e-25 1agrE a.91.1.1 18542 1dk8A 147 1.86e-21 1agrE a.91.1.1 18548 1bf5A 545 2.58e-01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1iapA 211 6.82e-01 a.91.1.1 62119 1eca 136 1.31e+00 1flp a.1.1.2 15209 1nxuA 333 2.26e+00 c.122.1.1 86389 1f60B 94 2.28e+00 1b64 d.58.12.1 39307 1n08A 163 2.73e+00 b.43.5.1 79730 1r89A 437 3.02e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1lopA 164 3.49e+00 2cpl b.62.1.1 27510 1ee4A 423 3.65e+00 1ee4A a.118.1.1 19128 1qxmA 300 5.79e+00 b.42.2.1,b.42.2.1 96533,96534 1k3yA 221 5.81e+00 a.45.1.1,c.47.1.5 77245,77246 1ju2A 536 6.29e+00 c.3.1.2,d.16.1.1 77169,77170 1g8iA 190 7.46e+00 1rec a.39.1.5 60363 1v37A 177 7.85e+00 1jalA 363 8.36e+00 c.37.1.8,d.15.10.2 84138,84139 1ngnA 155 8.43e+00 a.96.1.2 85697 1itbB 315 8.80e+00 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1j8bA 112 9.31e+00 d.222.1.1 77101 1evyA 366 9.54e+00 1evyA a.100.1.6,c.2.1.6 18811,30215 1ieaB 228 9.97e+00 1iakB b.1.1.2,d.19.1.1 21632,38206 1f5vA 240 1.00e+01 1bkjA d.90.1.1 40255 1hx0A 496 1.17e+01 b.71.1.1,c.1.8.1 61346,61347 1ayl 541 1.19e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1np3A 338 1.26e+01 a.100.1.2,c.2.1.6 85946,85947 1pg4A 652 1.34e+01 e.23.1.1 88067 1nu0A 138 1.35e+01 c.55.3.8 92165 1d3bB 91 1.41e+01 1d3bB b.38.1.1 24804 1oaa 259 1.46e+01 1oaa c.2.1.2 29829 1f2tB 148 1.51e+01 1f2tB 2lisA 136 1.55e+01 1lis a.19.1.1 16405 1h5uA 842 1.56e+01 1a8i c.87.1.4 60655 1q32A 544 1.56e+01 d.136.1.3,d.136.1.3 104507,104508 1p1mA 406 1.59e+01 b.92.1.4,c.1.9.9 87696,87697 1qmvA 197 1.65e+01 1qq2A c.47.1.10 33066 1ezfA 340 1.67e+01 1ezfA a.128.1.2 19440 1tr9A 341 1.72e+01 1pylA 97 1.73e+01 d.1.1.2 104391 1kaeA 434 1.74e+01 c.82.1.2 72247 1bkjA 240 1.84e+01 1bkjA d.90.1.1 40243 1f06A 320 2.00e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1eerB 227 2.03e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1qahA 136 2.04e+01 d.79.1.1 96338 1o9iA 266 2.35e+01 a.25.1.3 92671 1auiB 169 2.38e+01 1auiB a.39.1.5 17325 1oa8A 133 2.48e+01 b.145.1.1 92698 1h0pA 182 2.52e+01 b.62.1.1 76450 1faaA 124 2.64e+01 1erv c.47.1.1 32738 1jx4A 352 2.66e+01 d.240.1.1,e.8.1.7 90378,90379 2ilk 160 2.67e+01 2ilk a.26.1.3 16885 1pu1A 94 2.73e+01 d.266.1.1 104307 1jv1A 505 2.74e+01 c.68.1.5 71892 1jljA 189 2.77e+01 c.57.1.1 63169 1oe1A 336 2.79e+01 b.6.1.3,b.6.1.3 86891,86892 1geqA 248 2.81e+01 2tysA c.1.2.4 28589 1ng6A 148 2.84e+01 a.182.1.1 85670 1h16A 759 2.85e+01 c.7.1.1 76462 1g6hA 257 2.87e+01 1gajA c.37.1.12 60318 1obbA 480 2.90e+01 c.2.1.5,d.162.1.2 86760,86761 1nz0A 118 2.90e+01 d.14.1.2 86433 1rss 151 2.94e+01 1rss a.75.1.1 18392 1k8kD 300 3.02e+01 d.198.2.1,d.198.2.1 68309,68310 1rvgA 305 3.02e+01 c.1.10.2 97920 1y9lA 115 3.36e+01 1j6wA 175 3.44e+01 1j98A d.185.1.2 62663 1fvkA 189 3.57e+01 1fvkA c.47.1.13 90351 1smd 496 3.59e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1oj5A 132 3.72e+01 d.110.3.8 93087 2dkaA 544 3.76e+01 1rz2A 254 3.83e+01 b.100.1.1 105130 1qhtA 775 3.97e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1mnaA 298 3.98e+01 c.69.1.22 79322 1ovnA 248 4.10e+01 a.71.1.1,c.47.1.7 93602,93603 1eljA 381 4.10e+01 4mbp c.94.1.1 35791 1px5A 349 4.10e+01 a.160.1.2,d.218.1.6 95277,95278 1s2wA 295 4.10e+01 c.1.12.7 98407 1rxwA 336 4.24e+01 a.60.7.1,c.120.1.2 98059,98060 1ivnA 190 4.25e+01 c.23.10.5 83719 1n46A 258 4.33e+01 a.123.1.1 85315 1fs7A 485 4.35e+01 1qdbA a.138.1.3 19691 1s3eA 520 4.42e+01 c.3.1.2,d.16.1.5 98426,98427 1sc6A 404 4.53e+01 1hl2A 297 4.90e+01 c.1.10.1 83581 1aop 497 4.92e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1a0cA 438 4.93e+01 1a0cA c.1.15.3 29529 1k47A 337 5.04e+01 d.14.1.5,d.58.26.4 72040,72041 1f74A 293 5.11e+01 1nal3 c.1.10.1 29079 1cfzA 162 5.15e+01 1cfzA c.56.1.1 33754 1dxeA 256 5.16e+01 1dxeA c.1.12.5 29310 1qtoA 122 5.18e+01 1bylA d.32.1.2 38494 1dxsA 80 5.24e+01 1cokA a.60.1.2 17944 1bdb 277 5.28e+01 1bdb c.2.1.2 29874 1k0mA 241 5.36e+01 a.45.1.1,c.47.1.5 67949,67950 1xocA 520 5.51e+01 1ayx 492 5.53e+01 1ayx a.102.1.1 18825 1aa7A 158 5.78e+01 1aa7A a.95.1.1 18741 1qgiA 259 5.80e+01 1qgiA d.2.1.7 37001 1e5dA 402 5.89e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1n1fA 159 5.96e+01 a.26.1.3 79803 1dz3A 130 5.99e+01 1dz3A c.23.1.1 31105 1p99A 295 6.20e+01 c.94.1.1 94384 1p9aG 290 6.21e+01 c.10.2.7 87990 1gppA 237 6.31e+01 b.86.1.2 76262 1ncs 47 6.36e+01 1ncs g.37.1.1 45040 1vhwA 253 6.45e+01 c.56.2.1 100706 1fjgJ 105 6.45e+01 1fjfJ d.58.15.1 39330 1tqgA 105 6.57e+01 a.24.10.3 107224 1p32A 209 6.58e+01 1p32A d.25.1.1 38379 1hq1A 105 6.60e+01 1dulA a.36.1.1 17120 1bg1A 722 6.66e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1t1vA 93 6.70e+01 c.47.1.14 106278 1e5rA 290 6.75e+01 1e5rA b.82.2.4 59276 1oi0A 124 6.82e+01 c.97.3.1 93045 1oxjA 173 6.98e+01 a.60.1.2,a.118.1.13 87517,87518 1otgA 125 7.01e+01 1otgA d.80.1.2 39831 1h5rA 293 7.11e+01 c.68.1.6 65623 1hlb 158 7.13e+01 1hlb a.1.1.2 15625 1g94A 448 7.20e+01 b.71.1.1,c.1.8.1 65169,65170 1kamA 194 7.24e+01 c.26.1.3 72254 1h3gA 601 7.29e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1dd9A 338 7.31e+01 1dd9A e.13.1.1 43254 1snrA 341 7.34e+01 b.6.1.3,b.6.1.3 105823,105824 1j1iA 296 7.37e+01 c.69.1.10 83977 2dfkA 402 7.49e+01 1g8pA 350 7.50e+01 1g8pA c.37.1.20 60376 4ubpA 101 7.54e+01 1ubpA d.8.1.1 37352 1h3qA 140 7.77e+01 d.110.4.3 76652 1t6uA 117 7.77e+01 a.24.22.1 106584 1mtyB 384 7.82e+01 1mtyB a.25.1.2 16740 1s9rA 410 7.90e+01 d.126.1.4 98758 1e3oC 160 7.95e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1nlnA 204 7.96e+01 d.3.1.7 91962 1hf8A 289 7.96e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1edg 380 8.02e+01 1edg c.1.8.3 28807 1fiqB 350 8.16e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1m4iA 181 8.29e+01 d.108.1.1 74457 1pytA 94 8.41e+01 1pytA d.58.3.1 39064 1hm9A 468 8.42e+01 b.81.1.4,c.68.1.5 65866,65867 1k8kA 418 8.65e+01 c.55.1.1,c.55.1.1 68305,68306 1r1tA 122 8.66e+01 a.4.5.5 104769 1dc1A 323 8.66e+01 1dc1A c.52.1.11 33321 1epwA 1290 8.69e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1ikpA 613 8.77e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1kqfB 294 8.83e+01 d.58.1.5,f.23.22.1 75900,75901 1dciA 275 8.88e+01 1dciA c.14.1.3 30918 1t95A 240 8.88e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1s5aA 150 8.91e+01 d.17.4.10 98525 1mzhA 225 8.94e+01 c.1.10.1 79698 1mfmA 153 8.99e+01 1mfmA b.1.8.1 22246