# TARGET T0302 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0302.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 386 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.026 0.010 0.016 0.019 0.232 0.697 2 M 0.035 0.018 0.005 0.007 0.138 0.797 3 V 0.032 0.034 0.003 0.005 0.093 0.834 4 S 0.021 0.017 0.001 0.003 0.099 0.859 5 P 0.012 0.004 0.015 0.043 0.150 0.776 6 E 0.020 0.004 0.106 0.471 0.209 0.190 7 E 0.043 0.010 0.128 0.420 0.283 0.116 8 A 0.086 0.016 0.088 0.390 0.233 0.187 9 V 0.088 0.027 0.037 0.485 0.162 0.200 10 K 0.071 0.019 0.047 0.456 0.183 0.225 11 W 0.042 0.008 0.027 0.455 0.195 0.274 12 G 0.032 0.008 0.028 0.249 0.262 0.421 13 E 0.043 0.041 0.018 0.410 0.163 0.325 14 S 0.027 0.017 0.014 0.456 0.094 0.392 15 F 0.001 0.001 0.012 0.979 0.005 0.003 16 D 0.001 0.001 0.019 0.972 0.006 0.002 17 K 0.001 0.001 0.023 0.966 0.008 0.002 18 L 0.001 0.001 0.021 0.949 0.022 0.007 19 L 0.001 0.003 0.017 0.884 0.063 0.032 20 S 0.001 0.005 0.007 0.570 0.164 0.254 21 H 0.001 0.003 0.001 0.052 0.170 0.773 22 R 0.001 0.001 0.007 0.925 0.044 0.024 23 D 0.001 0.001 0.011 0.924 0.054 0.010 24 G 0.001 0.001 0.007 0.966 0.018 0.007 25 L 0.001 0.001 0.002 0.993 0.002 0.003 26 E 0.001 0.001 0.001 0.996 0.001 0.001 27 A 0.001 0.001 0.001 0.997 0.001 0.001 28 F 0.001 0.001 0.001 0.997 0.001 0.001 29 T 0.001 0.001 0.001 0.998 0.001 0.001 30 R 0.001 0.001 0.001 0.996 0.001 0.001 31 F 0.001 0.001 0.002 0.992 0.003 0.002 32 L 0.001 0.001 0.005 0.972 0.010 0.012 33 K 0.001 0.001 0.015 0.934 0.029 0.021 34 T 0.001 0.001 0.017 0.876 0.062 0.042 35 E 0.001 0.001 0.013 0.797 0.072 0.116 36 F 0.002 0.005 0.014 0.246 0.159 0.575 37 S 0.003 0.006 0.016 0.115 0.277 0.583 38 E 0.001 0.001 0.124 0.725 0.115 0.034 39 E 0.003 0.001 0.105 0.782 0.077 0.031 40 N 0.002 0.001 0.052 0.894 0.032 0.019 41 I 0.012 0.003 0.013 0.899 0.031 0.042 42 E 0.023 0.002 0.008 0.931 0.017 0.019 43 F 0.068 0.002 0.023 0.870 0.026 0.011 44 W 0.085 0.001 0.033 0.848 0.025 0.009 45 I 0.083 0.002 0.058 0.815 0.031 0.010 46 A 0.054 0.003 0.035 0.838 0.038 0.033 47 C 0.008 0.002 0.051 0.809 0.046 0.084 48 E 0.003 0.001 0.164 0.771 0.039 0.022 49 D 0.004 0.001 0.177 0.731 0.065 0.021 50 F 0.006 0.005 0.111 0.735 0.104 0.039 51 K 0.013 0.008 0.068 0.561 0.176 0.175 52 K 0.026 0.011 0.056 0.418 0.262 0.226 53 S 0.019 0.015 0.027 0.286 0.325 0.330 54 K 0.008 0.014 0.004 0.108 0.222 0.643 55 G 0.002 0.002 0.001 0.020 0.107 0.869 56 P 0.001 0.001 0.009 0.959 0.014 0.017 57 Q 0.001 0.001 0.008 0.979 0.008 0.004 58 Q 0.001 0.001 0.010 0.980 0.007 0.003 59 I 0.001 0.001 0.002 0.991 0.002 0.003 60 H 0.001 0.001 0.002 0.994 0.001 0.002 61 L 0.001 0.001 0.001 0.997 0.001 0.001 62 K 0.001 0.001 0.001 0.995 0.002 0.002 63 A 0.001 0.001 0.001 0.999 0.001 0.001 64 K 0.001 0.001 0.001 0.995 0.002 0.001 65 A 0.001 0.001 0.001 0.996 0.002 0.001 66 I 0.001 0.001 0.002 0.991 0.004 0.002 67 Y 0.001 0.001 0.003 0.991 0.003 0.002 68 E 0.001 0.001 0.010 0.980 0.006 0.003 69 K 0.002 0.001 0.010 0.972 0.008 0.008 70 F 0.005 0.001 0.015 0.896 0.016 0.066 71 I 0.021 0.015 0.020 0.706 0.048 0.190 72 Q 0.033 0.014 0.025 0.374 0.395 0.159 73 T 0.015 0.006 0.027 0.157 0.610 0.184 74 D 0.007 0.004 0.018 0.021 0.745 0.205 75 A 0.025 0.014 0.013 0.005 0.769 0.174 76 P 0.047 0.013 0.034 0.018 0.381 0.507 77 K 0.157 0.020 0.047 0.021 0.315 0.440 78 E 0.478 0.021 0.037 0.019 0.177 0.267 79 V 0.618 0.048 0.011 0.030 0.068 0.226 80 N 0.456 0.032 0.007 0.032 0.151 0.321 81 L 0.105 0.016 0.003 0.024 0.172 0.680 82 D 0.044 0.005 0.004 0.031 0.251 0.664 83 F 0.009 0.003 0.062 0.600 0.209 0.116 84 H 0.015 0.006 0.050 0.616 0.155 0.158 85 T 0.011 0.005 0.012 0.894 0.031 0.048 86 K 0.004 0.001 0.002 0.977 0.006 0.010 87 E 0.002 0.001 0.001 0.993 0.002 0.002 88 V 0.002 0.001 0.002 0.992 0.003 0.001 89 I 0.001 0.001 0.001 0.995 0.002 0.001 90 T 0.001 0.001 0.002 0.993 0.003 0.001 91 N 0.001 0.001 0.003 0.986 0.006 0.004 92 S 0.001 0.001 0.005 0.927 0.026 0.040 93 I 0.005 0.009 0.014 0.662 0.155 0.156 94 T 0.013 0.013 0.017 0.419 0.205 0.334 95 Q 0.009 0.009 0.010 0.072 0.356 0.544 96 P 0.003 0.007 0.013 0.048 0.321 0.608 97 T 0.006 0.012 0.012 0.027 0.411 0.533 98 L 0.003 0.004 0.201 0.288 0.387 0.118 99 H 0.003 0.003 0.174 0.529 0.222 0.068 100 S 0.006 0.005 0.104 0.726 0.109 0.049 101 F 0.005 0.004 0.017 0.897 0.026 0.051 102 D 0.001 0.001 0.006 0.975 0.008 0.010 103 A 0.001 0.001 0.005 0.992 0.002 0.001 104 A 0.001 0.001 0.002 0.997 0.001 0.001 105 Q 0.001 0.001 0.001 0.998 0.001 0.001 106 S 0.001 0.001 0.001 0.998 0.001 0.001 107 R 0.001 0.001 0.001 0.998 0.001 0.001 108 V 0.001 0.001 0.001 0.999 0.001 0.001 109 Y 0.001 0.001 0.001 0.998 0.001 0.001 110 Q 0.001 0.001 0.001 0.998 0.001 0.001 111 L 0.001 0.001 0.002 0.995 0.001 0.002 112 M 0.001 0.001 0.005 0.979 0.006 0.010 113 E 0.001 0.002 0.011 0.942 0.021 0.023 114 Q 0.001 0.001 0.016 0.839 0.072 0.070 115 D 0.003 0.004 0.020 0.431 0.230 0.313 116 S 0.003 0.005 0.052 0.451 0.244 0.245 117 Y 0.011 0.008 0.064 0.427 0.298 0.192 118 T 0.007 0.003 0.066 0.604 0.201 0.119 119 R 0.016 0.005 0.102 0.710 0.108 0.059 120 F 0.016 0.005 0.064 0.822 0.062 0.032 121 L 0.022 0.007 0.056 0.750 0.076 0.089 122 K 0.011 0.005 0.018 0.757 0.061 0.149 123 S 0.009 0.003 0.004 0.481 0.082 0.421 124 D 0.001 0.001 0.004 0.970 0.010 0.014 125 I 0.001 0.001 0.005 0.982 0.008 0.003 126 Y 0.001 0.001 0.003 0.991 0.004 0.001 127 L 0.001 0.001 0.004 0.992 0.003 0.001 128 D 0.001 0.001 0.005 0.987 0.004 0.003 129 L 0.001 0.001 0.009 0.952 0.018 0.020 130 M 0.001 0.002 0.007 0.893 0.037 0.060 131 E 0.002 0.003 0.005 0.734 0.075 0.180 132 G 0.003 0.002 0.003 0.072 0.140 0.780