# TARGET T0302 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0302.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 386 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.143 0.212 0.287 0.144 0.081 0.027 0.053 0.025 0.020 0.009 0.001 2 M 0.086 0.267 0.462 0.034 0.063 0.027 0.022 0.005 0.025 0.006 0.001 3 V 0.101 0.177 0.614 0.047 0.010 0.037 0.002 0.001 0.009 0.001 0.002 4 S 0.020 0.175 0.628 0.004 0.084 0.018 0.005 0.001 0.053 0.011 0.001 5 P 0.614 0.007 0.324 0.019 0.002 0.008 0.001 0.001 0.001 0.002 0.021 6 E 0.741 0.029 0.158 0.035 0.011 0.005 0.003 0.008 0.004 0.004 0.001 7 E 0.746 0.028 0.158 0.042 0.008 0.006 0.002 0.002 0.005 0.002 0.001 8 A 0.781 0.029 0.114 0.046 0.006 0.015 0.003 0.001 0.003 0.001 0.002 9 V 0.731 0.088 0.053 0.094 0.014 0.011 0.002 0.001 0.005 0.001 0.001 10 K 0.428 0.139 0.170 0.159 0.046 0.015 0.020 0.003 0.018 0.002 0.001 11 W 0.256 0.077 0.318 0.188 0.035 0.030 0.053 0.012 0.026 0.003 0.001 12 G 0.224 0.054 0.160 0.054 0.088 0.008 0.037 0.215 0.009 0.151 0.001 13 E 0.233 0.124 0.469 0.070 0.049 0.035 0.008 0.003 0.005 0.004 0.001 14 S 0.060 0.177 0.578 0.008 0.081 0.048 0.002 0.001 0.041 0.005 0.001 15 F 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 D 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 K 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.927 0.001 0.004 0.066 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 L 0.774 0.017 0.063 0.127 0.004 0.006 0.005 0.001 0.003 0.001 0.001 20 S 0.219 0.019 0.066 0.639 0.009 0.019 0.014 0.007 0.006 0.002 0.001 21 H 0.010 0.069 0.645 0.013 0.015 0.106 0.004 0.001 0.136 0.001 0.001 22 R 0.970 0.001 0.003 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 D 0.920 0.001 0.005 0.069 0.001 0.001 0.002 0.001 0.001 0.001 0.001 24 G 0.928 0.001 0.003 0.052 0.001 0.001 0.002 0.008 0.001 0.004 0.001 25 L 0.990 0.001 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 F 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 F 0.988 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.962 0.001 0.003 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 K 0.944 0.003 0.010 0.035 0.001 0.003 0.004 0.001 0.001 0.001 0.001 34 T 0.833 0.024 0.021 0.107 0.006 0.003 0.001 0.001 0.002 0.001 0.001 35 E 0.723 0.042 0.044 0.156 0.010 0.008 0.006 0.002 0.008 0.001 0.001 36 F 0.446 0.071 0.102 0.188 0.038 0.028 0.057 0.013 0.046 0.011 0.001 37 S 0.765 0.021 0.078 0.063 0.018 0.018 0.014 0.008 0.004 0.010 0.001 38 E 0.886 0.013 0.019 0.061 0.008 0.004 0.002 0.003 0.001 0.002 0.001 39 E 0.891 0.015 0.035 0.043 0.005 0.004 0.002 0.001 0.001 0.001 0.001 40 N 0.866 0.016 0.014 0.077 0.003 0.009 0.009 0.002 0.004 0.001 0.001 41 I 0.890 0.052 0.032 0.010 0.003 0.008 0.001 0.001 0.002 0.001 0.001 42 E 0.979 0.009 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 F 0.977 0.011 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 W 0.975 0.011 0.006 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 45 I 0.968 0.009 0.004 0.014 0.001 0.002 0.001 0.001 0.001 0.001 0.001 46 A 0.937 0.011 0.016 0.024 0.004 0.004 0.001 0.001 0.002 0.001 0.001 47 C 0.955 0.003 0.004 0.034 0.001 0.002 0.001 0.001 0.001 0.001 0.001 48 E 0.985 0.001 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 D 0.893 0.001 0.003 0.095 0.001 0.001 0.003 0.002 0.001 0.001 0.001 50 F 0.617 0.014 0.034 0.316 0.002 0.006 0.007 0.001 0.004 0.001 0.001 51 K 0.766 0.030 0.096 0.064 0.005 0.012 0.021 0.002 0.004 0.001 0.001 52 K 0.500 0.041 0.063 0.314 0.009 0.023 0.023 0.010 0.016 0.001 0.001 53 S 0.181 0.131 0.483 0.091 0.021 0.058 0.015 0.003 0.015 0.002 0.001 54 K 0.163 0.171 0.138 0.439 0.036 0.023 0.012 0.002 0.017 0.001 0.001 55 G 0.024 0.045 0.474 0.005 0.138 0.014 0.008 0.009 0.036 0.247 0.001 56 P 0.965 0.001 0.015 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.002 57 Q 0.920 0.002 0.009 0.061 0.001 0.002 0.001 0.002 0.001 0.001 0.001 58 Q 0.952 0.003 0.007 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 I 0.965 0.003 0.008 0.017 0.001 0.003 0.001 0.001 0.001 0.001 0.001 60 H 0.985 0.002 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 L 0.991 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 K 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 I 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 Y 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 E 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 K 0.931 0.002 0.002 0.064 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 F 0.833 0.006 0.014 0.113 0.002 0.006 0.012 0.003 0.010 0.001 0.001 71 I 0.608 0.085 0.132 0.124 0.007 0.029 0.004 0.001 0.009 0.001 0.001 72 Q 0.226 0.157 0.313 0.120 0.066 0.055 0.020 0.003 0.032 0.008 0.001 73 T 0.696 0.021 0.179 0.080 0.010 0.006 0.002 0.001 0.002 0.002 0.001 74 D 0.182 0.009 0.035 0.599 0.007 0.017 0.061 0.074 0.014 0.002 0.001 75 A 0.037 0.110 0.695 0.007 0.030 0.018 0.017 0.003 0.072 0.011 0.001 76 P 0.201 0.007 0.465 0.040 0.001 0.017 0.001 0.001 0.001 0.001 0.264 77 K 0.043 0.516 0.262 0.022 0.083 0.016 0.012 0.003 0.043 0.001 0.001 78 E 0.039 0.128 0.714 0.007 0.003 0.074 0.002 0.001 0.019 0.001 0.014 79 V 0.131 0.566 0.137 0.054 0.023 0.051 0.001 0.001 0.035 0.001 0.001 80 N 0.020 0.140 0.229 0.044 0.032 0.354 0.067 0.001 0.110 0.001 0.001 81 L 0.167 0.238 0.225 0.281 0.030 0.034 0.004 0.001 0.018 0.001 0.001 82 D 0.061 0.094 0.685 0.014 0.037 0.069 0.004 0.001 0.026 0.009 0.001 83 F 0.966 0.001 0.003 0.022 0.001 0.001 0.002 0.004 0.001 0.001 0.001 84 H 0.972 0.001 0.003 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 T 0.967 0.003 0.005 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 K 0.993 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 E 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 V 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 I 0.982 0.003 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 T 0.971 0.005 0.004 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 N 0.924 0.005 0.010 0.046 0.005 0.001 0.006 0.002 0.001 0.001 0.001 92 S 0.520 0.015 0.017 0.421 0.005 0.006 0.008 0.003 0.004 0.001 0.001 93 I 0.391 0.111 0.256 0.112 0.016 0.059 0.023 0.004 0.027 0.001 0.001 94 T 0.421 0.098 0.090 0.329 0.011 0.023 0.010 0.001 0.015 0.002 0.001 95 Q 0.065 0.141 0.495 0.010 0.073 0.018 0.053 0.003 0.132 0.009 0.001 96 P 0.197 0.007 0.683 0.026 0.001 0.023 0.001 0.001 0.001 0.001 0.062 97 T 0.035 0.278 0.365 0.024 0.136 0.079 0.005 0.003 0.069 0.005 0.001 98 L 0.873 0.020 0.027 0.057 0.005 0.008 0.003 0.002 0.003 0.002 0.001 99 H 0.793 0.011 0.024 0.148 0.004 0.007 0.006 0.003 0.004 0.001 0.001 100 S 0.719 0.028 0.034 0.174 0.012 0.013 0.007 0.002 0.010 0.002 0.001 101 F 0.957 0.003 0.012 0.017 0.001 0.005 0.002 0.001 0.001 0.001 0.001 102 D 0.988 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 R 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 L 0.979 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 M 0.888 0.001 0.003 0.102 0.001 0.001 0.002 0.001 0.001 0.001 0.001 113 E 0.883 0.004 0.030 0.063 0.001 0.008 0.009 0.001 0.001 0.001 0.001 114 Q 0.585 0.026 0.068 0.273 0.011 0.015 0.009 0.006 0.004 0.001 0.001 115 D 0.210 0.088 0.276 0.182 0.040 0.084 0.057 0.006 0.055 0.002 0.001 116 S 0.616 0.050 0.085 0.156 0.023 0.019 0.021 0.017 0.008 0.004 0.001 117 Y 0.656 0.070 0.084 0.116 0.018 0.024 0.012 0.004 0.013 0.003 0.001 118 T 0.822 0.024 0.055 0.075 0.005 0.008 0.003 0.001 0.003 0.001 0.001 119 R 0.853 0.015 0.039 0.064 0.006 0.007 0.011 0.002 0.003 0.001 0.001 120 F 0.747 0.034 0.055 0.106 0.006 0.022 0.014 0.003 0.013 0.001 0.001 121 L 0.595 0.081 0.182 0.101 0.007 0.020 0.007 0.001 0.005 0.001 0.001 122 K 0.393 0.099 0.156 0.222 0.045 0.031 0.024 0.008 0.014 0.009 0.001 123 S 0.246 0.099 0.479 0.026 0.091 0.022 0.004 0.003 0.019 0.013 0.001 124 D 0.973 0.001 0.003 0.016 0.001 0.002 0.002 0.003 0.001 0.001 0.001 125 I 0.981 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 126 Y 0.979 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 L 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 D 0.986 0.001 0.003 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 L 0.919 0.002 0.003 0.076 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 M 0.803 0.017 0.038 0.128 0.002 0.003 0.003 0.001 0.004 0.001 0.001 131 E 0.383 0.027 0.091 0.418 0.009 0.010 0.040 0.010 0.008 0.005 0.001 132 G 0.169 0.034 0.210 0.045 0.075 0.005 0.054 0.210 0.006 0.193 0.001