# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 1.86e-04 1gqzA 274 3.37e-04 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 5.26e-04 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 2.25e-03 1tm0A 350 5.71e-01 d.21.1.3 107147 1sdjA 310 6.15e-01 d.21.1.2,d.21.1.2 98807,98808 1t6kA 278 2.00e+00 1xubA 298 2.44e+00 1u1wA 298 2.57e+00 1ym5A 300 4.60e+00 1pzgA 331 5.50e+00 c.2.1.5,d.162.1.1 95425,95426 1s5jA 847 7.24e+00 1oe4A 247 7.54e+00 c.18.1.3 86895 1o0pA 104 8.43e+00 d.58.7.1 86535 1qyaA 307 8.95e+00 d.21.1.2,d.21.1.2 104653,104654 2azpA 318 1.01e+01 1soxA 466 1.21e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 2awaA 390 1.25e+01 1fp6A 289 1.34e+01 1cp2A c.37.1.10 32243 1d0iA 156 1.44e+01 2dhqA c.23.13.1 31383 1l5jA 865 1.61e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1g2iA 166 1.63e+01 1g2iA c.23.16.2 31438 1gtzA 156 1.65e+01 c.23.13.1 70539 1vr3A 191 1.70e+01 1g5pA 289 1.72e+01 1cp2A c.37.1.10 32253 2cxcA 144 2.13e+01 1a3z 155 2.13e+01 1rcy b.6.1.1 23019 1ep2B 261 2.17e+01 1ep2B b.43.4.2,c.25.1.3 25666,31556 1xfjA 261 2.19e+01 d.194.1.2 109585 1wybA 392 2.21e+01 1dlwA 116 2.26e+01 1dlyA a.1.1.1 14982 1kkoA 413 2.32e+01 c.1.11.2,d.54.1.1 68675,68676 1jj2F 119 2.36e+01 1ffkE d.79.3.1 63091 1cur 155 2.37e+01 1rcy b.6.1.1 23021 1h21A 247 2.43e+01 a.138.1.3 76510 1ep3B 262 2.64e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1e30A 155 2.76e+01 1rcy b.6.1.1 23016 1rcy 151 3.21e+01 1rcy b.6.1.1 23018 1zowA 313 3.21e+01 1a8z 153 3.22e+01 1rcy b.6.1.1 23020 2b3nA 159 3.26e+01 1nc5A 373 3.29e+01 a.102.1.6 85548 2calA 154 3.56e+01 1ortA 335 3.59e+01 1othA c.78.1.1,c.78.1.1 35204,35205 1xd8A 289 3.65e+01 1f76A 336 3.66e+01 c.1.4.1 76160 2cr4A 126 3.71e+01 1pgyA 47 3.85e+01 a.5.2.1 94696 1souA 194 3.86e+01 c.124.1.6 105858 2ewrA 170 4.09e+01 1wycA 392 4.16e+01 1xp8A 366 4.26e+01 1ht6A 405 4.54e+01 b.71.1.1,c.1.8.1 83629,83630 1s7jA 262 4.61e+01 d.21.1.2 98647 1eysH 259 4.65e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1orrA 347 4.78e+01 c.2.1.2 93460 1xjvA 294 4.83e+01 1hg3A 225 5.22e+01 1hg3A c.1.1.1 61025 1othA 321 5.31e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1yzhA 214 5.49e+01 1n25A 368 5.51e+01 c.37.1.20 85264 2gsq 202 5.64e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1nipA 289 5.89e+01 1cp2A c.37.1.10 32263 1ak0 270 5.96e+01 1ak0 a.124.1.2 19345 1sr8A 298 6.00e+01 e.54.1.1 105959 1cp2A 269 6.15e+01 1cp2A c.37.1.10 32269 1jb3A 131 6.16e+01 1jc7A b.40.3.2 62833 1f6fA 199 6.25e+01 1f6fA a.26.1.1 16839 2bl9A 238 6.42e+01 1khbA 625 6.61e+01 c.91.1.1,c.109.1.1 68606,68607 2bw0A 329 6.89e+01 1nscA 390 7.01e+01 2qwc b.68.1.1 27591 1edt 271 7.03e+01 2ebn c.1.8.5 28993 1ac5 483 7.04e+01 1ac5 c.69.1.5 34653 1r61A 207 7.10e+01 c.8.8.1 97138 1nkpA 88 7.12e+01 a.38.1.1 80573 1ixlA 131 7.31e+01 d.38.1.5 90717 1g55A 343 7.36e+01 1g55A c.66.1.26 34247 2blcA 238 7.37e+01 1jjiA 311 7.42e+01 c.69.1.2 66766 1m6eX 359 7.44e+01 c.66.1.35 91188 1e32A 458 7.49e+01 1e32A b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1dnv 437 7.50e+01 1dnv b.121.5.3 23332 1hmy 327 7.52e+01 6mhtA c.66.1.26 34229 2fclA 169 7.64e+01 1hn9A 317 7.75e+01 1hn9A c.95.1.2,c.95.1.2 35977,35978 1lqaA 346 7.84e+01 c.1.7.1 84674 1e5eA 404 7.93e+01 1ibjA c.67.1.3 59265 1qatB 622 7.95e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17355,23172,29600 1xzpB 150 7.98e+01 1c93A 265 8.07e+01 2ebn c.1.8.5 28998 1izmA 184 8.16e+01 a.199.1.1 90725 1gmyA 261 8.18e+01 d.3.1.1 76236 1jc7A 131 8.20e+01 1jc7A b.40.3.2 62873 2av4A 162 8.27e+01 1om4A 422 8.35e+01 d.174.1.1 87067 1z5bA 469 8.53e+01 1gv3A 248 8.64e+01 a.2.11.1,d.44.1.1 70585,70586 1yqzA 438 8.68e+01 2avdA 219 8.68e+01 1mpp 361 8.78e+01 2rmpA b.50.1.2 26856 2az4A 429 8.86e+01 1moq 368 8.88e+01 1moq c.80.1.1 35302 1b9vA 390 8.90e+01 2qwc b.68.1.1 27603 1wchA 315 8.90e+01