# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 1.46e-04 2gkeA 274 5.51e-04 1gqzA 274 5.53e-04 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 8.93e-04 1bwzA d.21.1.1,d.21.1.1 38337,38338 1tm0A 350 2.62e-02 d.21.1.3 107147 1z94A 147 9.14e-01 1xubA 298 1.39e+00 1u1wA 298 1.42e+00 1l1nA 183 2.64e+00 b.47.1.4 73476 1t6kA 278 2.76e+00 2g6yA 217 2.90e+00 1ym5A 300 4.50e+00 1sdjA 310 8.29e+00 d.21.1.2,d.21.1.2 98807,98808 1o97D 320 9.77e+00 c.26.2.3,c.31.1.2 81233,81234 1j6uA 469 1.39e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1azsB 212 1.41e+01 1azsA d.58.29.1 39423 1n7vA 555 1.44e+01 b.126.1.1 85377 1h7xD 1025 1.54e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15690,28635,30331,30616,39014 1qyaA 307 1.62e+01 d.21.1.2,d.21.1.2 104653,104654 1a8z 153 1.63e+01 1rcy b.6.1.1 23020 1ab8A 220 1.66e+01 1azsA d.58.29.1 39414 1vdkA 466 1.69e+01 a.127.1.1 100561 1h7xA 1025 1.73e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1mkeA 152 1.73e+01 b.55.1.4 79231 2calA 154 1.85e+01 1gteD 1025 1.94e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70455,70456,70457,70458,70459 1h7xC 1025 1.95e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15689,28634,30330,30615,39013 1h7xB 1025 1.99e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15688,28633,30329,30614,39012 1h7wB 1025 2.00e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15684,28629,30325,30610,39008 1gt8D 1025 2.01e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70433,70434,70435,70436,70437 1gt8B 1025 2.07e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70423,70424,70425,70426,70427 1gthB 1025 2.16e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70488,70489,70490,70491,70492 1e30A 155 2.17e+01 1rcy b.6.1.1 23016 1gthA 1025 2.20e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70483,70484,70485,70486,70487 1gthC 1025 2.27e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70493,70494,70495,70496,70497 1wekA 217 2.29e+01 1gqyA 475 2.33e+01 c.5.1.1,c.59.1.1,c.72.2.1 83305,83306,83307 1p3dA 475 2.40e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1gt8A 1025 2.40e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70418,70419,70420,70421,70422 1gthD 1025 2.57e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70498,70499,70500,70501,70502 1h7wA 1025 2.60e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1h7wD 1025 2.60e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15686,28631,30327,30612,39010 1gteA 1025 2.66e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1eo9A 209 2.70e+01 3pchA b.3.6.1 22731 1wc3A 219 2.72e+01 1ioaA 240 2.79e+01 1led b.29.1.1 24168 1gt8C 1025 2.84e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70428,70429,70430,70431,70432 1igtB 444 2.93e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19765,20867,20868,20869 1ut9A 609 3.11e+01 a.102.1.2,b.1.18.2 99912,99913 1d0iA 156 3.33e+01 2dhqA c.23.13.1 31383 1a3z 155 3.41e+01 1rcy b.6.1.1 23019 1rcy 151 3.41e+01 1rcy b.6.1.1 23018 1cur 155 3.43e+01 1rcy b.6.1.1 23021 2aaa 484 3.43e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1mxmA 254 3.60e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1cqqA 180 3.96e+01 1cqqA b.47.1.4 26422 1w6sA 599 3.96e+01 1k24A 253 4.05e+01 f.4.4.2 72002 1gtzA 156 4.68e+01 c.23.13.1 70539 1ffkE 119 4.74e+01 1ffkE d.79.3.1 39812 1o5zA 442 5.01e+01 c.59.1.2,c.72.2.2 92530,92531 2a74A 643 5.04e+01 1o0pA 104 5.19e+01 d.58.7.1 86535 1z5hA 780 5.25e+01 1ewqA 765 5.34e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1ofzA 312 5.47e+01 b.68.8.1 86978 1kvkA 395 5.53e+01 d.14.1.5,d.58.26.3 73060,73061 1v6cA 441 5.57e+01 1clqA 903 5.63e+01 1clqA c.55.3.5,e.8.1.1 33717,43006 1qatB 622 5.67e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17355,23172,29600 1vlrA 350 5.78e+01 d.13.1.3,d.246.1.1 108860,108861 2myr 501 5.99e+01 1eft 405 6.09e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1lybB 241 6.10e+01 1smrA 2f6uA 234 6.29e+01 2fclA 169 6.39e+01 2azpA 318 6.49e+01 1ton 235 6.50e+01 5ptp b.47.1.2 26307 2ewrA 170 6.62e+01 7catA 506 6.73e+01 1cf9A e.5.1.1 42781 2cxkA 95 6.88e+01 1usyA 275 6.89e+01 1l0wA 580 7.07e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1jscA 630 7.09e+01 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1dp4A 435 7.10e+01 1dp4A c.93.1.1 35710 1oe4A 247 7.22e+01 c.18.1.3 86895 1rzuA 485 7.53e+01 c.87.1.8 105140 1e6qM 501 7.58e+01 1e70M c.1.8.4 28920 1ut1A 148 7.62e+01 b.2.3.6 108014 1u9yA 284 7.71e+01 1xtqA 177 7.75e+01 1fi4A 416 7.75e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1ajqB 557 7.84e+01 1ajqB 1pnkB 557 7.84e+01 1ajqB 1gkfB 557 7.88e+01 1gm7B 557 7.88e+01 1gk9B 557 7.90e+01 1js8A 394 7.95e+01 a.86.1.1,b.112.1.1 67219,67220 1gm9B 557 7.98e+01 2fomB 185 8.02e+01 2essA 248 8.12e+01 1qasA 622 8.12e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1tafB 70 8.23e+01 1tafB a.22.1.3 16482 1bk0 331 8.27e+01 1bk0 b.82.2.1 28118 1odmA 331 8.27e+01 b.82.2.1 86875 1wosA 364 8.29e+01 b.44.2.1,d.250.1.1 109468,109469 1v61A 132 8.37e+01 b.55.1.1 108389 1mrzA 293 8.39e+01 b.43.5.1,c.26.1.3 91452,91453 5gcnA 166 8.41e+01 1yghA d.108.1.1 40807 1e70M 501 8.59e+01 1e70M c.1.8.4 28926 1y9zA 441 8.99e+01