# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 8.89e-06 1gqzA 274 1.79e-05 d.21.1.1,d.21.1.1 83311,83312 1sdjA 310 2.82e-01 d.21.1.2,d.21.1.2 98807,98808 1xubA 298 7.62e-01 1ep3B 262 9.21e-01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1pzgA 331 2.00e+00 c.2.1.5,d.162.1.1 95425,95426 1oe4A 247 3.60e+00 c.18.1.3 86895 1othA 321 4.16e+00 1othA c.78.1.1,c.78.1.1 35260,35261 1kkoA 413 4.19e+00 c.1.11.2,d.54.1.1 68675,68676 1sr8A 298 5.34e+00 e.54.1.1 105959 1qyaA 307 5.68e+00 d.21.1.2,d.21.1.2 104653,104654 1nscA 390 6.00e+00 2qwc b.68.1.1 27591 1xjvA 294 6.20e+00 1s5jA 847 6.39e+00 1ht6A 405 6.52e+00 b.71.1.1,c.1.8.1 83629,83630 1dlwA 116 7.01e+00 1dlyA a.1.1.1 14982 1g55A 343 7.94e+00 1g55A c.66.1.26 34247 1gtzA 156 8.81e+00 c.23.13.1 70539 1nnsA 326 9.30e+00 c.88.1.1 85910 1a2zA 220 9.79e+00 1a2zA c.56.4.1 33794 1mpp 361 1.03e+01 2rmpA b.50.1.2 26856 1lqaA 346 1.12e+01 c.1.7.1 84674 1pgyA 47 1.20e+01 a.5.2.1 94696 1g2iA 166 1.27e+01 1g2iA c.23.16.2 31438 1h21A 247 1.30e+01 a.138.1.3 76510 1orrA 347 1.36e+01 c.2.1.2 93460 1cp2A 269 1.84e+01 1cp2A c.37.1.10 32269 1hnjA 317 1.84e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1gvhA 396 1.86e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1guzA 310 1.88e+01 c.2.1.5,d.162.1.1 65586,65587 1sc6A 404 2.12e+01 1oi7A 288 2.15e+01 c.2.1.8,c.23.4.1 87049,87050 1f6fA 199 2.21e+01 1f6fA a.26.1.1 16839 1q6uA 245 2.21e+01 d.26.1.1 95998 1q4gA 553 2.29e+01 a.93.1.2,g.3.11.1 95789,95790 1r61A 207 2.44e+01 c.8.8.1 97138 1mpxA 615 2.44e+01 b.18.1.13,c.69.1.21 85041,85042 1khbA 625 2.45e+01 c.91.1.1,c.109.1.1 68606,68607 1quuA 250 2.52e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1to6A 371 2.66e+01 c.141.1.1 107170 1dnv 437 2.70e+01 1dnv b.121.5.3 23332 1u84A 90 2.94e+01 16pk 415 3.01e+01 16pk c.86.1.1 35454 1nkpA 88 3.04e+01 a.38.1.1 80573 1jogA 146 3.09e+01 a.24.16.2 77142 1q5zA 177 3.10e+01 a.196.1.1 95954 1pvvA 315 3.11e+01 c.78.1.1,c.78.1.1 95190,95191 1nc5A 373 3.17e+01 a.102.1.6 85548 1m1sA 116 3.24e+01 b.1.11.2 84747 1ak0 270 3.30e+01 1ak0 a.124.1.2 19345 1t64A 377 3.33e+01 c.42.1.2 106543 1izmA 184 3.35e+01 a.199.1.1 90725 1nznA 126 3.36e+01 a.118.8.1 92382 1nw1A 429 3.40e+01 d.144.1.8 86286 1mkiA 330 3.42e+01 e.3.1.2 84994 1vljA 407 3.44e+01 e.22.1.2 108832 1uebA 184 3.50e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1e30A 155 3.62e+01 1rcy b.6.1.1 23016 1om4A 422 3.78e+01 d.174.1.1 87067 1jmkC 230 3.85e+01 c.69.1.22 71747 1rdfA 267 3.90e+01 c.108.1.3 104884 1onwA 390 3.93e+01 b.92.1.7,c.1.9.13 87172,87173 1qhkA 47 4.27e+01 1qhkA d.100.1.2 40694 1oi6A 205 4.30e+01 b.82.1.1 103940 2gfaA 119 4.37e+01 1j1jA 240 4.46e+01 a.118.16.1 90762 1i8aA 189 4.49e+01 1i82A b.1.9.2 61951 1mkmA 249 4.52e+01 a.4.5.33,d.110.2.2 79242,79243 1je5A 206 4.53e+01 1je5A b.40.4.7 62909 1s4cA 155 4.54e+01 1rqpA 299 4.59e+01 b.141.1.1,c.132.1.1 97754,97755 1g1kA 143 4.73e+01 1aohA b.2.2.2 22404 1vdkA 466 4.80e+01 a.127.1.1 100561 1aihA 170 4.83e+01 1aihA d.163.1.1 42149 1qd1A 325 4.88e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1kkhA 317 4.94e+01 d.14.1.5,d.58.26.3 72645,72646 1c93A 265 4.96e+01 2ebn c.1.8.5 28998 1edt 271 5.04e+01 2ebn c.1.8.5 28993 1f8fA 371 5.05e+01 b.35.1.2,c.2.1.1 83246,83247 1qx4A 274 5.07e+01 b.43.4.2,c.25.1.1 104624,104625 1m6eX 359 5.23e+01 c.66.1.35 91188 1dp4A 435 5.23e+01 1dp4A c.93.1.1 35710 1uxaA 194 5.31e+01 b.21.1.1 108091 1hg8A 349 5.33e+01 b.80.1.3 65830 1ef8A 261 5.38e+01 1ef8A c.14.1.3 30921 1s4iA 175 5.42e+01 1nmoA 247 5.43e+01 c.135.1.1 91980 1qgvA 142 5.43e+01 1qgvA c.47.1.8 33056 1ju3A 583 5.43e+01 b.18.1.13,c.69.1.21 67300,67301 1dosA 358 5.47e+01 1dosA c.1.10.2 29175 1iapA 211 5.48e+01 a.91.1.1 62119 1o54A 277 5.57e+01 c.66.1.13 92482 1l6sA 323 5.60e+01 c.1.10.3 73627 1swvA 267 5.62e+01 1gwmA 153 5.65e+01 b.18.1.19 83348 1nf2A 268 5.81e+01 c.108.1.10 91849 1e0fI 57 5.84e+01 1e0fI g.3.15.2 44377 1jb3A 131 5.84e+01 1jc7A b.40.3.2 62833 1s2xA 206 5.87e+01 a.47.3.1 105229 1sknP 92 5.98e+01 1sknP a.37.1.1 17127 1js8A 394 5.99e+01 a.86.1.1,b.112.1.1 67219,67220 1mdl 359 6.04e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1k8kE 178 6.07e+01 a.148.1.1 68311 1c4rA 182 6.41e+01 1c4rA b.29.1.4 24229 1pzsA 208 6.46e+01 b.1.8.1 104397 1q6hA 224 6.50e+01 d.26.1.1 95975 1bif 469 6.55e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1php 394 6.62e+01 16pk c.86.1.1 35452 1j75A 67 6.64e+01 a.4.5.19 62673 1rl4A 188 6.75e+01 d.167.1.1 97636 1h8uA 117 6.77e+01 1h8uA d.169.1.1 60793 1r44A 202 6.79e+01 d.65.1.4 104787 1evhA 112 6.83e+01 1evhA b.55.1.4 26997 1ouwA 152 6.89e+01 b.77.3.1 93571 1qipA 183 6.96e+01 1qipA d.32.1.1 38470 1npsA 88 7.05e+01 1prs b.11.1.1 23622 1bx1A 314 7.18e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1r7lA 110 7.21e+01 d.277.1.1 104837 1dozA 309 7.28e+01 1ak1 c.92.1.1 35592 1kvkA 395 7.53e+01 d.14.1.5,d.58.26.3 73060,73061 1rd5A 262 7.62e+01 1vk1A 242 7.69e+01 d.268.1.2 108634 1wvfA 520 8.11e+01 1pjxA 314 8.15e+01 b.68.6.1 104167 1pbyA 489 8.16e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1fh0A 221 8.21e+01 1cs8A d.3.1.1 59832 1ti6B 274 8.29e+01 b.3.5.1,d.58.1.5 106976,106977 1moq 368 8.39e+01 1moq c.80.1.1 35302 1cfzA 162 8.52e+01 1cfzA c.56.1.1 33754 1l7vA 326 8.55e+01 f.22.1.1 73672 1ogiA 303 8.59e+01 b.43.4.2,c.25.1.1 92914,92915 1s12A 94 8.74e+01 1bxyA 60 8.82e+01 1bxyA d.59.1.1 39525