# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 1.97e-08 1gqzA 274 2.31e-08 d.21.1.1,d.21.1.1 83311,83312 1sdjA 310 1.47e-01 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 1.63e-01 d.21.1.2,d.21.1.2 104653,104654 1xubA 298 3.76e-01 1oe4A 247 4.47e-01 c.18.1.3 86895 1nnsA 326 1.32e+00 c.88.1.1 85910 1pzgA 331 1.61e+00 c.2.1.5,d.162.1.1 95425,95426 1ep3B 262 2.10e+00 1ep2B b.43.4.2,c.25.1.3 25664,31554 1k6dA 220 2.46e+00 c.124.1.2 72082 1hzdA 272 4.10e+00 c.14.1.3 65969 1g55A 343 4.15e+00 1g55A c.66.1.26 34247 1oi6A 205 5.57e+00 b.82.1.1 103940 1kkoA 413 5.74e+00 c.1.11.2,d.54.1.1 68675,68676 1npyA 271 7.04e+00 c.2.1.7,c.58.1.5 85995,85996 1m6eX 359 7.58e+00 c.66.1.35 91188 1ni4B 341 8.01e+00 c.36.1.7,c.48.1.2 85729,85730 1yn9A 169 8.24e+00 1m1sA 116 8.79e+00 b.1.11.2 84747 1sr8A 298 1.04e+01 e.54.1.1 105959 16pk 415 1.11e+01 16pk c.86.1.1 35454 1e30A 155 1.12e+01 1rcy b.6.1.1 23016 1gw5A 621 1.15e+01 a.118.1.10 70629 1rreA 200 1.20e+01 d.14.1.10 97791 1s5jA 847 1.24e+01 1nw1A 429 1.42e+01 d.144.1.8 86286 1ss4A 153 1.45e+01 d.32.1.6 105976 1c8uA 285 1.73e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1hl9A 449 1.76e+01 b.71.1.3,c.1.8.11 90650,90651 1nc5A 373 1.76e+01 a.102.1.6 85548 1khbA 625 1.79e+01 c.91.1.1,c.109.1.1 68606,68607 1q6hA 224 1.84e+01 d.26.1.1 95975 1sc6A 404 1.85e+01 1ryaA 160 1.86e+01 d.113.1.5 105122 1k8kE 178 1.95e+01 a.148.1.1 68311 1rp0A 284 1.97e+01 1st9A 143 1.98e+01 c.47.1.10 98987 1hfuA 503 2.00e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1ouwA 152 2.16e+01 b.77.3.1 93571 1i8aA 189 2.24e+01 1i82A b.1.9.2 61951 1q6uA 245 2.24e+01 d.26.1.1 95998 1qx4A 274 2.26e+01 b.43.4.2,c.25.1.1 104624,104625 1g2iA 166 2.31e+01 1g2iA c.23.16.2 31438 1lqaA 346 2.32e+01 c.1.7.1 84674 1zelA 298 2.33e+01 1vknA 351 2.33e+01 c.2.1.3,d.81.1.1 108676,108677 1n1bA 549 2.60e+01 a.102.4.1,a.128.1.3 79799,79800 1bjt 793 2.66e+01 1bjt e.11.1.1 43249 1mpp 361 2.68e+01 2rmpA b.50.1.2 26856 1io7A 368 2.82e+01 1f4tA a.104.1.1 18971 1gvfA 286 2.84e+01 c.1.10.2 70599 1kb0A 677 2.89e+01 a.3.1.6,b.70.1.1 68378,68379 1hnjA 317 2.90e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1dzfA 215 2.98e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1mjfA 281 3.09e+01 c.66.1.17 79198 1php 394 3.19e+01 16pk c.86.1.1 35452 2dfkA 402 3.19e+01 1b24A 188 3.20e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1i4uA 181 3.26e+01 b.60.1.1 61732 1q6oA 216 3.27e+01 c.1.2.3 95986 1jhjA 171 3.44e+01 b.18.1.9 66714 1fm4A 159 3.48e+01 1bv1 d.129.3.1 76186 1h21A 247 3.54e+01 a.138.1.3 76510 1g0cA 364 3.60e+01 7a3hA c.1.8.3 60165 1sz7A 200 3.72e+01 1qfxA 460 3.73e+01 1qfxA c.60.1.2 33994 1bdb 277 4.02e+01 1bdb c.2.1.2 29874 1gvhA 396 4.04e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1prxA 224 4.11e+01 1prxA c.47.1.10 33076 1ry6A 360 4.15e+01 c.37.1.9 98090 1hynP 379 4.46e+01 1hynP d.112.1.2 61408 1o04A 500 4.48e+01 c.82.1.1 86508 1ku0A 388 4.65e+01 c.69.1.18 72994 1k66A 149 4.65e+01 c.23.1.1 90941 2cfuA 658 4.73e+01 1txgA 335 4.74e+01 1iapA 211 4.74e+01 a.91.1.1 62119 1vljA 407 4.82e+01 e.22.1.2 108832 1y8aA 332 4.83e+01 1n8jA 186 4.93e+01 c.47.1.10 85401 1m9zA 111 4.98e+01 g.7.1.3 78881 1dnv 437 4.99e+01 1dnv b.121.5.3 23332 1t2dA 322 5.02e+01 c.2.1.5,d.162.1.1 99084,99085 1pzsA 208 5.04e+01 b.1.8.1 104397 1ogiA 303 5.22e+01 b.43.4.2,c.25.1.1 92914,92915 1s7zA 117 5.36e+01 a.159.3.1 98715 1pg6A 243 5.45e+01 b.82.5.2 94673 1kktA 511 5.57e+01 a.102.2.1 68687 1gtzA 156 5.62e+01 c.23.13.1 70539 1ak0 270 5.68e+01 1ak0 a.124.1.2 19345 1tedA 393 5.72e+01 c.95.1.2 106807 1uk8A 282 5.75e+01 c.69.1.10 107907 1x74A 360 5.78e+01 1a0tP 413 5.98e+01 1a0tP f.4.3.2 43794 1ej8A 140 6.05e+01 1qupA b.1.8.1 22300 1umkA 275 6.11e+01 1s1qA 145 6.13e+01 d.20.1.2 98351 1j0hA 588 6.13e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1or7A 194 6.15e+01 a.4.13.2,a.177.1.1 87332,87333 1o20A 427 6.32e+01 c.82.1.1 86556 1jbkA 195 6.36e+01 c.37.1.20 71631 1q4gA 553 6.48e+01 a.93.1.2,g.3.11.1 95789,95790 1ju3A 583 6.53e+01 b.18.1.13,c.69.1.21 67300,67301 1pqhA 143 6.63e+01 b.52.2.1 95017 1o59A 355 6.77e+01 b.18.1.22,b.18.1.22 92495,92496 1senA 164 6.85e+01 c.47.1.1 105465 1jb9A 316 6.88e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1cp2A 269 6.98e+01 1cp2A c.37.1.10 32269 1ia8A 289 7.27e+01 1ia8A d.144.1.7 62112 1b6a 478 7.30e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1s55A 156 7.42e+01 1t82A 155 7.46e+01 d.38.1.5 106639 2blnA 305 7.69e+01 1avbA 226 7.73e+01 1led b.29.1.1 24158 1hfeL 421 7.96e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1dosA 358 8.03e+01 1dosA c.1.10.2 29175 1l6sA 323 8.09e+01 c.1.10.3 73627 1i2sA 282 8.34e+01 e.3.1.1 71104 1tw9A 206 8.46e+01 a.45.1.1,c.47.1.5 107381,107382 1h16A 759 8.49e+01 c.7.1.1 76462 1v6sA 390 8.53e+01 c.86.1.1 100424 1gmiA 136 8.81e+01 b.7.1.1 65309 1x9iA 302 8.81e+01 1guzA 310 8.83e+01 c.2.1.5,d.162.1.1 65586,65587 1s4cA 155 8.86e+01 1kte 105 8.93e+01 1kte c.47.1.1 32771