Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1w61A/T0301-1w61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5407e-071.94e-40
1gqzA/T0301-1gqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4554e-054.26e-45 d.21.1.1
d.21.1.1
2gkeA/T0301-2gkeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9214e-055.15e-45
1tm0A/T0301-1tm0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6316e-041.48e-36 d.21.1.3
1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2715e-023.52e-30
1sdjA/T0301-1sdjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7398e-021.97e-26 d.21.1.2
d.21.1.2
1u1wA/T0301-1u1wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1355e-022.75e-29
1ym5A/T0301-1ym5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ym5A/T0301-1ym5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5389e-029.77e-32
1t6kA/T0301-1t6kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6kA/T0301-1t6kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6319e-021.45e-30
2azpA/T0301-2azpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1921e-012.00e-32

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001