# List of top-scoring protein chains for T0301.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 6.65e-02 1bwzA 274 7.19e-02 1bwzA d.21.1.1,d.21.1.1 38337,38338 1ygs 234 2.15e+00 1ygs b.26.1.1 23907 1mr1A 235 2.17e+00 b.26.1.1 79418 1u7vB 236 2.26e+00 b.26.1.1 107730 1u7fB 239 2.28e+00 b.26.1.1 107721 1udeA 195 2.33e+00 b.40.5.1 99208 1g88A 268 2.35e+00 1ygs b.26.1.1 23911 1dd1A 268 2.36e+00 b.26.1.1 23908 1uf2K 506 2.42e+00 1s6yA 450 2.43e+00 c.2.1.5,d.162.1.2 105314,105315 1kkoA 413 4.91e+00 c.1.11.2,d.54.1.1 68675,68676 1ioiA 208 6.47e+00 1a2zA c.56.4.1 62629 1iofA 208 6.92e+00 1a2zA c.56.4.1 62625 2g23A 612 8.25e+00 1y9kA 157 8.45e+00 1xhkA 187 9.50e+00 1st8A 543 9.69e+00 2b3nA 159 1.04e+01 1s5jA 847 1.14e+01 1hl9A 449 1.52e+01 b.71.1.3,c.1.8.11 90650,90651 1oe4A 247 1.61e+01 c.18.1.3 86895 1re5A 450 1.68e+01 a.127.1.1 104911 1vk1A 242 1.73e+01 d.268.1.2 108634 1sdjA 310 1.77e+01 d.21.1.2,d.21.1.2 98807,98808 2a9aA 372 1.80e+01 2a9bA 372 1.84e+01 1qyaA 307 1.92e+01 d.21.1.2,d.21.1.2 104653,104654 1qy9A 297 1.93e+01 d.21.1.2,d.21.1.2 104645,104646 1o9jA 501 2.09e+01 c.82.1.1 86694 1soxA 466 2.22e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 2g6yA 217 2.23e+01 1cp2A 269 2.39e+01 1cp2A c.37.1.10 32269 1xa6A 466 2.52e+01 2aw5A 541 2.97e+01 1shzC 233 3.00e+01 2ax3A 502 3.19e+01 1de0A 289 3.23e+01 1cp2A c.37.1.10 32255 1hixA 190 3.37e+01 b.29.1.11 65839 2fug3 783 3.43e+01 1e0fI 57 3.67e+01 1e0fI g.3.15.2 44377 1djuA 388 3.82e+01 1bjwA c.67.1.1 59116 1gdeA 389 3.83e+01 c.67.1.1 60456 1hus 155 3.99e+01 1rss a.75.1.1 18391 2ccaA 740 4.00e+01 1sj2A 743 4.00e+01 a.93.1.3,a.93.1.3 105597,105598 1o0pA 104 4.04e+01 d.58.7.1 86535 2afhE 289 4.15e+01 1xd8A 289 4.24e+01 1s4iA 175 4.45e+01 2ccdA 740 4.48e+01 1hfeL 421 4.61e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2f6uA 234 4.63e+01 1tm0A 350 4.81e+01 d.21.1.3 107147 1r18A 227 5.12e+01 c.66.1.7 96800 1e08A 371 5.30e+01 i.4.1.1 45914 2cakA 154 5.31e+01 1n1jB 97 5.49e+01 a.22.1.3 79814 1ie7C 570 5.61e+01 1ubpC b.92.1.1,c.1.9.2 62315,62316 4ubpC 570 5.63e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1u3nA 162 5.67e+01 2ew1A 201 5.83e+01 1moq 368 5.86e+01 1moq c.80.1.1 35302 1g20E 289 6.14e+01 1cp2A c.37.1.10 32247 1wocA 103 6.21e+01 1l1nA 183 6.27e+01 b.47.1.4 73476 1rw4A 272 6.35e+01 c.37.1.10 97962 1txyA 104 6.36e+01 1xdbA 289 6.39e+01 1my6A 199 6.52e+01 a.2.11.1,d.44.1.1 85232,85233 2biwA 490 6.68e+01 1ewrA 649 6.73e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1 19073,32387,33744 1jscA 630 6.75e+01 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1baiA 124 6.85e+01 2rspB b.50.1.1 26773 2rspA 124 6.98e+01 2rspB b.50.1.1 26771 1ioaA 240 6.99e+01 1led b.29.1.1 24168 1to6A 371 6.99e+01 c.141.1.1 107170 2b1xA 470 7.09e+01 1uc2A 481 7.13e+01 d.261.1.1 99161 1ewqA 765 7.18e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1lm6A 215 7.19e+01 d.167.1.1 84628 1fw6A 768 7.19e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19071,32385,33742,39745 1t9bA 677 7.26e+01 1nscA 390 7.50e+01 2qwc b.68.1.1 27591 1f5vA 240 7.51e+01 1bkjA d.90.1.1 40255 1f3dJ 219 7.53e+01 32c2A b.1.1.1,b.1.1.2 20461,21425 1pgjA 478 7.56e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1b1cA 181 7.65e+01 1amoA c.23.5.2 31212 1v1qA 134 7.69e+01 1zy8K 229 7.90e+01 1djxA 624 7.94e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1qasA 622 7.94e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1mvpA 124 7.98e+01 2rspB b.50.1.1 26775 1xfjA 261 8.16e+01 d.194.1.2 109585 1qi1A 475 8.22e+01 1euhA c.82.1.1 35381 1euhA 475 8.51e+01 1euhA c.82.1.1 35369 2cb5A 453 8.53e+01 3gcb d.3.1.1 37035 1dlwA 116 8.56e+01 1dlyA a.1.1.1 14982 1souA 194 8.59e+01 c.124.1.6 105858 1o0sA 605 8.65e+01 c.2.1.7,c.58.1.3 86540,86541 2deoA 230 8.71e+01 1yzfA 195 8.73e+01 1f74A 293 8.75e+01 1nal3 c.1.10.1 29079 1vhzA 198 8.80e+01 d.113.1.1 100718 1zivA 339 8.86e+01 1sxjA 516 8.86e+01 a.80.1.1,c.37.1.20 106081,106082