# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 1.22e-05 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 2.78e-05 1bwzA 274 3.32e-05 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 1.53e-04 1tm0A 350 6.48e-04 d.21.1.3 107147 1sdjA 310 1.84e-01 d.21.1.2,d.21.1.2 98807,98808 1z94A 147 2.38e-01 1xubA 298 3.90e-01 1qyaA 307 4.12e-01 d.21.1.2,d.21.1.2 104653,104654 1u1wA 298 4.64e-01 1t6kA 278 6.36e-01 2g6yA 217 1.08e+00 1zvtA 256 2.14e+00 2essA 248 2.30e+00 1mixA 206 3.09e+00 a.11.2.1,b.55.1.5 79166,79167 1o0pA 104 3.61e+00 d.58.7.1 86535 1ym5A 300 3.74e+00 2a6tA 271 3.94e+00 2ewrA 170 5.38e+00 1ejxC 567 5.54e+00 b.92.1.1,c.1.9.2 83184,83185 2fclA 169 5.56e+00 1z5hA 780 5.80e+00 1dp4A 435 5.82e+00 1dp4A c.93.1.1 35710 1o17A 345 6.07e+00 a.46.2.1,c.27.1.1 80765,80766 1xtqA 177 6.50e+00 1y0gA 191 8.10e+00 1wc3A 219 8.10e+00 1umzA 278 9.47e+00 b.29.1.2 99639 2sli 679 9.50e+00 2sli b.29.1.9,b.68.1.1 24274,27611 1o97D 320 9.73e+00 c.26.2.3,c.31.1.2 81233,81234 1e8gA 560 9.73e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1h7wA 1025 1.02e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1mo9A 523 1.14e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1q47A 495 1.15e+01 b.69.12.1 104532 1ev7A 317 1.15e+01 1ev7B c.52.1.9 33315 1gteA 1025 1.17e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2bgcA 238 1.24e+01 1s7jA 262 1.33e+01 d.21.1.2 98647 1ycoA 279 1.59e+01 1wekA 217 1.67e+01 1p3dA 475 1.69e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1w1kA 560 1.71e+01 d.58.32.1,d.145.1.1 109059,109060 1v58A 241 1.78e+01 c.47.1.9,d.17.3.1 108371,108372 1d0iA 156 1.84e+01 2dhqA c.23.13.1 31383 1sotA 320 1.93e+01 b.36.1.4,b.47.1.1 105852,105853 2tbs 222 1.98e+01 5ptp b.47.1.2 26009 1oe4A 247 2.05e+01 c.18.1.3 86895 1azsB 212 2.09e+01 1azsA d.58.29.1 39423 1rec 201 2.10e+01 1rec a.39.1.5 17326 2a6hC 1119 2.11e+01 1mxmA 254 2.14e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1usyA 275 2.15e+01 1br9 194 2.23e+01 1br9 b.40.3.1 25235 1v25A 541 2.23e+01 e.23.1.1 108275 2d0oA 610 2.26e+01 1g72A 573 2.28e+01 4aahA b.70.1.1 27680 2eveA 157 2.35e+01 1ton 235 2.42e+01 5ptp b.47.1.2 26307 1iw7C 1119 2.50e+01 e.29.1.1 71474 1g291 372 2.56e+01 1g291 1t6aA 126 2.63e+01 d.129.8.1 106555 1ab8A 220 2.79e+01 1azsA d.58.29.1 39414 1w6sA 599 2.80e+01 2bx2L 517 2.87e+01 1lf6A 684 2.90e+01 a.102.1.5,b.30.5.5 77918,77919 1dzlA 505 2.92e+01 1dzlA b.121.6.1 23586 1i7oA 429 3.00e+01 1i7oA d.177.1.1,d.177.1.1 61893,61894 1pzsA 208 3.27e+01 b.1.8.1 104397 1abrA 251 3.31e+01 1mrj d.165.1.1 42196 1su4A 994 3.32e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1q1rA 431 3.35e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1prxA 224 3.45e+01 1prxA c.47.1.10 33076 2ar1A 172 3.52e+01 1cqqA 180 3.70e+01 1cqqA b.47.1.4 26422 1ut9A 609 3.79e+01 a.102.1.2,b.1.18.2 99912,99913 1o5zA 442 3.81e+01 c.59.1.2,c.72.2.2 92530,92531 1u9yA 284 3.93e+01 1xttA 216 4.10e+01 2dddA 225 4.15e+01 1z4vA 532 4.25e+01 2aliA 158 4.46e+01 1obwA 175 4.48e+01 2prd b.40.5.1 25416 1hj8A 222 4.56e+01 b.47.1.2 65844 1ko7A 314 4.62e+01 c.98.2.1,c.91.1.2 72797,72798 1eo9A 209 4.68e+01 3pchA b.3.6.1 22731 1vdkA 466 4.74e+01 a.127.1.1 100561 1xssA 225 4.83e+01 1kq3A 376 4.89e+01 e.22.1.2 68790 1lm8V 160 4.90e+01 b.3.3.1 74035 1yobA 179 4.90e+01 1zq1A 438 4.91e+01 1yg9A 330 4.91e+01 1jb7B 260 5.08e+01 1otcB b.40.4.3 62839 1ywmA 200 5.13e+01 2a74A 643 5.19e+01 1xhkA 187 5.24e+01 1vquA 374 5.25e+01 1g0sA 209 5.26e+01 1g0sA d.113.1.1 60187 2calA 154 5.36e+01 2azpA 318 5.41e+01 1sr8A 298 5.46e+01 e.54.1.1 105959 1ukvG 453 5.46e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 1kkcA 221 5.62e+01 a.2.11.1,d.44.1.1 68660,68661 1i1iP 681 5.65e+01 1i1iP d.92.1.5 40297 1pjpA 226 5.69e+01 5ptp b.47.1.2 26301 1q7lA 198 5.78e+01 c.56.5.4 96044 1z0sA 278 5.79e+01 1fo8A 343 5.80e+01 1foaA c.68.1.10 59927 1ema 236 5.81e+01 1ema d.22.1.1 38339 1xo8A 151 5.89e+01 1lj5A 379 5.91e+01 e.1.1.1 73928 1k12A 158 6.08e+01 b.18.1.15 71978 4uagA 437 6.08e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1r2rA 248 6.10e+01 c.1.1.1 96875 1kay 381 6.10e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 2bcgG 453 6.11e+01 1ofzA 312 6.13e+01 b.68.8.1 86978 2sak 121 6.21e+01 2sak d.15.5.1 37711 1oxdA 227 6.22e+01 d.22.1.1 93687 1z4xA 532 6.25e+01 2a19A 175 6.34e+01 2cr4A 126 6.34e+01 1e30A 155 6.35e+01 1rcy b.6.1.1 23016 2gc9A 179 6.37e+01 1v1pA 211 6.41e+01 b.40.2.2,d.15.6.1 108268,108269 2fgtA 417 6.43e+01 1fm2B 520 6.48e+01 1fm2B 1hzdA 272 6.51e+01 c.14.1.3 65969 1kkoA 413 6.54e+01 c.1.11.2,d.54.1.1 68675,68676 1suwA 249 6.56e+01 e.52.1.1 106027 1ej8A 140 6.61e+01 1qupA b.1.8.1 22300 1gkmA 509 6.66e+01 a.127.1.2 70228 2a8yA 270 6.72e+01 1p1mA 406 6.74e+01 b.92.1.4,c.1.9.9 87696,87697 2a1hA 365 6.85e+01 1mkeA 152 6.90e+01 b.55.1.4 79231 1nkqA 259 6.97e+01 d.177.1.1 103862 2d4qA 257 6.99e+01 1v54F 98 7.05e+01 g.41.5.3 100327 1bupA 386 7.08e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1dwnA 127 7.12e+01 1dwnA d.85.1.1 40141 1y7wA 291 7.18e+01 1kvkA 395 7.26e+01 d.14.1.5,d.58.26.3 73060,73061 1g87A 614 7.31e+01 a.102.1.2,b.2.2.2 83275,83276 1oivA 191 7.39e+01 c.37.1.8 93076 1i40A 175 7.41e+01 b.40.5.1 66024 1zl0A 311 7.47e+01 1j6pA 418 7.47e+01 b.92.1.4,c.1.9.9 77089,77090 1eluA 390 7.49e+01 1elqA c.67.1.3 34434 1pjcA 361 7.52e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1bkb 136 7.54e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1qwtA 255 7.60e+01 b.26.1.3 96501 2bcgY 206 7.60e+01 1j5yA 187 7.85e+01 a.4.5.1,d.94.2.1 71592,71593 1wucA 250 7.87e+01 1rqwA 207 7.94e+01 b.25.1.1 97781 2occF 98 8.00e+01 2occF g.41.5.3 45256 1ukvY 206 8.01e+01 c.37.1.8 107918 1x82A 190 8.15e+01 1nnsA 326 8.18e+01 c.88.1.1 85910 2awkA 228 8.20e+01 2ajuL 216 8.22e+01 7fd1A 106 8.25e+01 1a6l d.58.1.2 38953 2aieP 203 8.30e+01 1xhlA 297 8.30e+01 c.2.1.2 109591 1bv1 159 8.34e+01 1bv1 d.129.3.1 41313 2bvlA 543 8.35e+01 2f6uA 234 8.36e+01 1rz3A 201 8.37e+01 c.37.1.6 98132 1xuvA 178 8.38e+01 1omrA 201 8.38e+01 a.39.1.5 93349 1zy7A 403 8.42e+01 1b8fA 509 8.62e+01 1b8fA a.127.1.2 19434 2bvyA 475 8.65e+01