# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 3.26e-05 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 4.72e-05 1bwzA 274 9.70e-05 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 1.17e-04 1tm0A 350 2.22e-03 d.21.1.3 107147 1z94A 147 6.60e-01 1qyaA 307 8.27e-01 d.21.1.2,d.21.1.2 104653,104654 1ym5A 300 9.75e-01 1sdjA 310 1.05e+00 d.21.1.2,d.21.1.2 98807,98808 2g6yA 217 1.45e+00 1u1wA 298 1.64e+00 1xubA 298 1.74e+00 1t6kA 278 2.12e+00 1dp4A 435 5.97e+00 1dp4A c.93.1.1 35710 1h7wA 1025 6.12e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1gteA 1025 6.27e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1wekA 217 7.37e+00 1o0pA 104 7.93e+00 d.58.7.1 86535 1z5hA 780 7.94e+00 1ut9A 609 8.04e+00 a.102.1.2,b.1.18.2 99912,99913 1mkeA 152 8.15e+00 b.55.1.4 79231 1o97D 320 8.54e+00 c.26.2.3,c.31.1.2 81233,81234 1kq3A 376 1.28e+01 e.22.1.2 68790 1prxA 224 1.48e+01 1prxA c.47.1.10 33076 1oe4A 247 1.49e+01 c.18.1.3 86895 1wc3A 219 1.56e+01 1v58A 241 1.69e+01 c.47.1.9,d.17.3.1 108371,108372 1o5zA 442 1.74e+01 c.59.1.2,c.72.2.2 92530,92531 1mo9A 523 1.76e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1azsB 212 1.88e+01 1azsA d.58.29.1 39423 1p3dA 475 1.96e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2calA 154 2.10e+01 1sa3A 262 2.21e+01 c.52.1.23 105400 1ycoA 279 2.21e+01 1d0iA 156 2.22e+01 2dhqA c.23.13.1 31383 1mkiA 330 2.45e+01 e.3.1.2 84994 1e30A 155 2.48e+01 1rcy b.6.1.1 23016 1t6cA 315 2.49e+01 c.55.1.8,c.55.1.8 106558,106559 2eifA 136 2.54e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1cqqA 180 2.55e+01 1cqqA b.47.1.4 26422 1t6aA 126 2.66e+01 d.129.8.1 106555 1ab8A 220 2.67e+01 1azsA d.58.29.1 39414 1vlrA 350 2.70e+01 d.13.1.3,d.246.1.1 108860,108861 1eo9A 209 2.83e+01 3pchA b.3.6.1 22731 1g291 372 3.13e+01 1g291 1ixlA 131 3.14e+01 d.38.1.5 90717 1qxrA 189 3.15e+01 b.82.1.7 96552 1gtzA 156 3.20e+01 c.23.13.1 70539 1ejxC 567 3.34e+01 b.92.1.1,c.1.9.2 83184,83185 2eveA 157 3.35e+01 1xtqA 177 3.39e+01 1g0sA 209 3.52e+01 1g0sA d.113.1.1 60187 2fclA 169 3.55e+01 1hzdA 272 3.57e+01 c.14.1.3 65969 1y0zA 330 3.58e+01 1v1pA 211 3.66e+01 b.40.2.2,d.15.6.1 108268,108269 1iw7C 1119 3.68e+01 e.29.1.1 71474 1o17A 345 3.69e+01 a.46.2.1,c.27.1.1 80765,80766 1cl8A 276 3.74e+01 1ckqA c.52.1.1 33230 2ewrA 170 3.76e+01 1vdkA 466 3.78e+01 a.127.1.1 100561 1k24A 253 3.94e+01 f.4.4.2 72002 2tbs 222 3.97e+01 5ptp b.47.1.2 26009 1hj8A 222 3.97e+01 b.47.1.2 65844 1x82A 190 3.98e+01 1n7vA 555 4.01e+01 b.126.1.1 85377 1tafB 70 4.12e+01 1tafB a.22.1.3 16482 1w6sA 599 4.26e+01 1suwA 249 4.36e+01 e.52.1.1 106027 2hrvA 142 4.37e+01 2hrvA b.47.1.4 26429 2cxkA 95 4.42e+01 1q1rA 431 4.60e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1s7jA 262 4.69e+01 d.21.1.2 98647 1rcy 151 4.84e+01 1rcy b.6.1.1 23018 1o70A 324 4.90e+01 b.118.1.1,b.118.1.1 81115,81116 1h0bA 256 4.98e+01 b.29.1.11 83422 2a6tA 271 5.05e+01 1wosA 364 5.18e+01 b.44.2.1,d.250.1.1 109468,109469 3ladA 476 5.19e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1b12A 248 5.21e+01 1b12A b.87.1.2 28388 1y0gA 191 5.21e+01 1ut1A 148 5.24e+01 b.2.3.6 108014 1mxmA 254 5.32e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1ton 235 5.33e+01 5ptp b.47.1.2 26307 2f6uA 234 5.37e+01 2ar1A 172 5.53e+01 1z0sA 278 5.54e+01 1ac5 483 5.80e+01 1ac5 c.69.1.5 34653 1rzhL 281 5.81e+01 f.26.1.1 98164 1dgfA 497 5.85e+01 1cf9A e.5.1.1 42782 1j5pA 253 5.88e+01 d.81.1.3,c.2.1.3 71577,83092 1f00I 282 6.03e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1nnsA 326 6.17e+01 c.88.1.1 85910 1xo8A 151 6.52e+01 2essA 248 6.71e+01 1b8fA 509 6.73e+01 1b8fA a.127.1.2 19434 1umzA 278 6.79e+01 b.29.1.2 99639 1u9yA 284 6.90e+01 1czfA 362 6.95e+01 1czfA b.80.1.3 28031 2a6hC 1119 6.97e+01 1kvkA 395 6.99e+01 d.14.1.5,d.58.26.3 73060,73061 1v61A 132 7.06e+01 b.55.1.1 108389 1u0kA 288 7.07e+01 d.21.1.2,d.21.1.2 107547,107548 1mixA 206 7.19e+01 a.11.2.1,b.55.1.5 79166,79167 1ofzA 312 7.30e+01 b.68.8.1 86978 1aun 208 7.30e+01 1thv b.25.1.1 23900 2bw8A 227 7.49e+01 2a74A 643 7.56e+01 1so7A 382 7.59e+01 1bkb 136 7.76e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1xe7A 203 7.77e+01 1ijyA 130 7.79e+01 1ijxA a.141.1.1 62517 1pkhA 204 7.85e+01 b.85.4.1 94832 1n0uA 842 7.87e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2myr 501 7.87e+01 1uurA 473 8.23e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1oa4A 222 8.33e+01 b.29.1.11 86731 2acfA 182 8.43e+01 1kkcA 221 8.44e+01 a.2.11.1,d.44.1.1 68660,68661 1yqdA 366 8.58e+01 1elvA 333 8.70e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1js8A 394 8.97e+01 a.86.1.1,b.112.1.1 67219,67220