# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 1.45e-07 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 2.10e-07 1w61A 414 2.83e-07 1bwzA 274 6.12e-07 1bwzA d.21.1.1,d.21.1.1 38337,38338 1tm0A 350 1.19e-05 d.21.1.3 107147 1u1wA 298 1.67e-02 1xubA 298 2.07e-02 1z94A 147 2.33e-02 1sdjA 310 2.79e-02 d.21.1.2,d.21.1.2 98807,98808 1qyaA 307 1.04e-01 d.21.1.2,d.21.1.2 104653,104654 2azpA 318 2.23e-01 1t6kA 278 2.73e-01 2g6yA 217 4.10e-01 1ym5A 300 5.63e-01 2essA 248 8.86e-01 1o0pA 104 1.48e+00 d.58.7.1 86535 1o17A 345 1.74e+00 a.46.2.1,c.27.1.1 80765,80766 1zvtA 256 1.78e+00 1z5hA 780 2.11e+00 1mkeA 152 2.59e+00 b.55.1.4 79231 1ycoA 279 2.79e+00 1umzA 278 2.86e+00 b.29.1.2 99639 1hx0A 496 3.15e+00 b.71.1.1,c.1.8.1 61346,61347 1mo9A 523 3.52e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ejxC 567 3.81e+00 b.92.1.1,c.1.9.2 83184,83185 1ixlA 131 4.51e+00 d.38.1.5 90717 1d0iA 156 6.26e+00 2dhqA c.23.13.1 31383 1g0sA 209 6.41e+00 1g0sA d.113.1.1 60187 2hrvA 142 6.71e+00 2hrvA b.47.1.4 26429 1eo9A 209 6.79e+00 3pchA b.3.6.1 22731 1iw7C 1119 7.76e+00 e.29.1.1 71474 2bw8A 227 8.15e+00 1prxA 224 8.17e+00 1prxA c.47.1.10 33076 1gtzA 156 8.67e+00 c.23.13.1 70539 1xoyA 161 8.87e+00 1y0gA 191 8.98e+00 1oe4A 247 8.99e+00 c.18.1.3 86895 1onqA 283 9.24e+00 b.1.1.2,d.19.1.1 93365,93366 2a6hC 1119 1.01e+01 1yg9A 330 1.04e+01 1vquA 374 1.07e+01 2calA 154 1.16e+01 1h7wA 1025 1.16e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1gteA 1025 1.18e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1e30A 155 1.20e+01 1rcy b.6.1.1 23016 1h0bA 256 1.22e+01 b.29.1.11 83422 2b3nA 159 1.23e+01 1v10A 521 1.24e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1oa4A 222 1.27e+01 b.29.1.11 86731 2sli 679 1.33e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1sr8A 298 1.36e+01 e.54.1.1 105959 1wp5A 323 1.39e+01 1wc3A 219 1.39e+01 1hzdA 272 1.51e+01 c.14.1.3 65969 1vdkA 466 1.52e+01 a.127.1.1 100561 1dkmA 410 1.54e+01 1dklA c.60.1.2 34000 2myr 501 1.56e+01 1xfjA 261 1.57e+01 d.194.1.2 109585 1wtaA 275 1.58e+01 1v58A 241 1.59e+01 c.47.1.9,d.17.3.1 108371,108372 2f6uA 234 1.60e+01 1b12A 248 1.64e+01 1b12A b.87.1.2 28388 2fclA 169 1.64e+01 2aliA 158 1.65e+01 2ewrA 170 1.68e+01 1s7jA 262 1.72e+01 d.21.1.2 98647 1dp4A 435 1.76e+01 1dp4A c.93.1.1 35710 1ogsA 497 1.82e+01 b.71.1.2,c.1.8.3 86997,86998 1w6sA 599 1.90e+01 1x82A 190 1.91e+01 1q47A 495 1.94e+01 b.69.12.1 104532 1wucA 250 1.96e+01 1rcy 151 1.97e+01 1rcy b.6.1.1 23018 1ut9A 609 1.97e+01 a.102.1.2,b.1.18.2 99912,99913 1azsB 212 1.99e+01 1azsA d.58.29.1 39423 1xtqA 177 1.99e+01 1wekA 217 2.00e+01 1q1rA 431 2.09e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2dddA 225 2.11e+01 2bx2L 517 2.11e+01 1xssA 225 2.16e+01 1ospO 257 2.16e+01 1ospO b.76.1.1 27971 1br9 194 2.17e+01 1br9 b.40.3.1 25235 2akrA 285 2.19e+01 1ac5 483 2.19e+01 1ac5 c.69.1.5 34653 1z5lA 285 2.22e+01 1vrmA 325 2.25e+01 1suuA 312 2.29e+01 b.68.10.1 99006 1qxrA 189 2.33e+01 b.82.1.7 96552 1p3dA 475 2.36e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1omrA 201 2.38e+01 a.39.1.5 93349 2bgiA 272 2.38e+01 1y0zA 330 2.38e+01 1vi6A 208 2.41e+01 c.23.15.1 100736 1rec 201 2.46e+01 1rec a.39.1.5 17326 1y9wA 140 2.49e+01 1uurA 473 2.49e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1dqqB 210 2.54e+01 1igtB b.1.1.1,b.1.1.2 20421,21391 1sotA 320 2.56e+01 b.36.1.4,b.47.1.1 105852,105853 1uisA 231 2.66e+01 d.22.1.1 99431 1wgoA 123 2.77e+01 2gc9A 179 2.82e+01 1smd 496 2.83e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1k24A 253 2.88e+01 f.4.4.2 72002 1kkcA 221 2.88e+01 a.2.11.1,d.44.1.1 68660,68661 1epfA 191 2.89e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1vlrA 350 2.91e+01 d.13.1.3,d.246.1.1 108860,108861 1z54A 132 2.92e+01 2eveA 157 2.95e+01 1dkqA 410 2.95e+01 1dklA c.60.1.2 33998 1omiA 248 2.96e+01 b.82.3.3,a.4.5.4 87079,87080 1nscA 390 3.10e+01 2qwc b.68.1.1 27591 2a6tA 271 3.15e+01 1u9yA 284 3.15e+01 1ywmA 200 3.18e+01 1tafB 70 3.19e+01 1tafB a.22.1.3 16482 1lm4A 194 3.23e+01 d.167.1.1 84626 1kay 381 3.28e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1bupA 386 3.30e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2fomB 185 3.45e+01 1uebA 184 3.52e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1jofA 365 3.54e+01 b.69.10.1 71775 1k12A 158 3.58e+01 b.18.1.15 71978 1x1nA 524 3.60e+01 1ton 235 3.66e+01 5ptp b.47.1.2 26307 2ai4A 119 3.69e+01 1mqvA 125 3.79e+01 a.24.3.2 79415 1ut8A 291 3.81e+01 a.60.7.1,c.120.1.2 99908,99909 1usyA 275 3.83e+01 1ciy 590 3.87e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1kq3A 376 3.91e+01 e.22.1.2 68790 1e4mM 501 3.95e+01 1e70M c.1.8.4 59226 1xo1A 291 3.96e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1ev7A 317 3.98e+01 1ev7B c.52.1.9 33315 1ut1A 148 4.02e+01 b.2.3.6 108014 1khdA 345 4.06e+01 a.46.2.1,c.27.1.1 77400,77401 1v8gA 329 4.09e+01 a.46.2.1,c.27.1.1 100505,100506 1xttA 216 4.20e+01 1o8bA 219 4.25e+01 c.124.1.4,d.58.40.1 81180,81181 2a8yA 270 4.25e+01 1ab8A 220 4.36e+01 1azsA d.58.29.1 39414 1zkiA 133 4.39e+01 1qstA 160 4.41e+01 1yghA d.108.1.1 40804 2ar1A 172 4.41e+01 1budA 197 4.47e+01 1atlA d.92.1.9 40328 1zl0A 311 4.50e+01 1josA 128 4.57e+01 d.52.7.1 84191 1e3aB 560 4.57e+01 1ajqB 1m7vA 363 4.60e+01 d.174.1.1 78748 2ae0X 345 4.64e+01 1ryiA 382 4.65e+01 2cxkA 95 4.66e+01 2aieP 203 4.79e+01 1mqoA 227 4.89e+01 d.157.1.1 103846 1i50B 1224 4.94e+01 e.29.1.1 61755 1ko7A 314 5.03e+01 c.98.2.1,c.91.1.2 72797,72798 1hj8A 222 5.03e+01 b.47.1.2 65844 1wleA 501 5.04e+01 1g291 372 5.04e+01 1g291 1yqfA 203 5.05e+01 2aexA 346 5.05e+01 2cr4A 126 5.15e+01 1pzsA 208 5.19e+01 b.1.8.1 104397 1fnnA 389 5.27e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1gk9B 557 5.30e+01 1qwdA 177 5.34e+01 b.60.1.1 96471 2cxcA 144 5.35e+01 1gv3A 248 5.41e+01 a.2.11.1,d.44.1.1 70585,70586 1cqqA 180 5.42e+01 1cqqA b.47.1.4 26422 1ci3M 249 5.44e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 2eifA 136 5.45e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1kv7A 488 5.46e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1oivA 191 5.46e+01 c.37.1.8 93076 7fd1A 106 5.47e+01 1a6l d.58.1.2 38953 2aioA 269 5.47e+01 1x99A 145 5.49e+01 1nnsA 326 5.62e+01 c.88.1.1 85910 1smlA 269 5.67e+01 1smlA d.157.1.1 42053 1fa8A 135 5.69e+01 1qipA d.32.1.1 38486 2fnaA 357 5.70e+01 1st0A 337 5.70e+01 d.13.1.3,d.246.1.1 98979,98980 1acc 735 5.76e+01 1acc f.11.1.1 43828 1f00I 282 5.90e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 3dni 260 5.94e+01 3dni d.151.1.1 41791 1mi3A 322 6.05e+01 c.1.7.1 91274 2as9A 210 6.07e+01 1fo8A 343 6.08e+01 1foaA c.68.1.10 59927 1cv8 174 6.18e+01 1cv8 d.3.1.1 37089 1l6xA 207 6.19e+01 b.1.1.2,b.1.1.2 73642,73643 2tbs 222 6.21e+01 5ptp b.47.1.2 26009 1xhkA 187 6.27e+01 1hw5A 210 6.29e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2fikA 287 6.40e+01 1u7nA 336 6.46e+01 c.77.1.4 107726 1mngA 203 6.50e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1cl8A 276 6.56e+01 1ckqA c.52.1.1 33230 2etvA 346 6.63e+01 1jihA 531 6.65e+01 d.240.1.1,e.8.1.7 90374,90375 1wluA 136 6.65e+01 1pjcA 361 6.65e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 2ew2A 316 6.71e+01 1bvqA 141 6.75e+01 1bvqA d.38.1.1 38542 1j1tA 233 6.80e+01 b.29.1.18 90771 1o97D 320 6.81e+01 c.26.2.3,c.31.1.2 81233,81234 1sk4A 163 6.86e+01 d.118.1.1 105664 1f2rI 100 6.92e+01 1c9fA d.15.2.1 37641 1u24A 337 6.94e+01 2bs3A 656 6.99e+01 1mixA 206 7.03e+01 a.11.2.1,b.55.1.5 79166,79167 1ta3A 274 7.04e+01 c.1.8.5 106731 1nbwA 607 7.07e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1f9zA 135 7.13e+01 1qipA d.32.1.1 38484 1lm6A 215 7.15e+01 d.167.1.1 84628 1v61A 132 7.16e+01 b.55.1.1 108389 1bqbA 301 7.18e+01 1hyt d.92.1.2 58962 1lf6A 684 7.22e+01 a.102.1.5,b.30.5.5 77918,77919 1p49A 562 7.33e+01 c.76.1.2 94089 2an1A 292 7.36e+01 1pyoA 167 7.36e+01 c.17.1.1 95370 1ov3A 138 7.39e+01 b.34.2.1,b.34.2.1 87451,87452 1dl5A 317 7.41e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1ffa 214 7.42e+01 1cex c.69.1.30 31289 1o70A 324 7.44e+01 b.118.1.1,b.118.1.1 81115,81116 1rzuA 485 7.46e+01 c.87.1.8 105140 1ltsA 185 7.47e+01 1lt3A d.166.1.1 42229 1t6aA 126 7.47e+01 d.129.8.1 106555 1shwB 181 7.53e+01 b.18.1.4 105563 1ufbA 127 7.53e+01 a.24.16.3 99331 1j1yA 136 7.90e+01 d.38.1.5 90776 2bh1A 250 7.92e+01 1xs1A 193 7.98e+01 1twfB 1224 7.99e+01 1wosA 364 8.01e+01 b.44.2.1,d.250.1.1 109468,109469 1itwA 741 8.03e+01 c.77.1.2 76793 2gaeA 346 8.08e+01 1l1jA 239 8.11e+01 b.47.1.1 84516 1wab 232 8.17e+01 1wab c.23.10.3 31341 1i1iP 681 8.18e+01 1i1iP d.92.1.5 40297 1rz3A 201 8.20e+01 c.37.1.6 98132 1j5pA 253 8.23e+01 d.81.1.3,c.2.1.3 71577,83092 2bz1A 196 8.26e+01 2a40B 260 8.31e+01 1e5pA 151 8.33e+01 1bj7 b.60.1.1 59272 1jyaA 130 8.33e+01 d.198.1.1 67453 1qlaA 656 8.38e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 2g84A 197 8.40e+01 1o7nA 449 8.45e+01 b.33.1.2,d.129.3.3 81162,81163 1ug1A 92 8.53e+01 b.34.2.1 99360 1q7lA 198 8.56e+01 c.56.5.4 96044 1qpxA 218 8.56e+01 1qpxA b.1.11.1,b.7.2.1 22318,23200 1oixA 191 8.68e+01 1oruA 195 8.69e+01 b.58.1.2 93464 1q15A 503 8.71e+01 c.26.2.1,d.153.1.1 95538,95539 1oygA 447 8.75e+01 b.67.2.2 93726 1kbvA 327 8.84e+01 b.6.1.3,b.6.1.3 68395,68396 1jae 471 8.85e+01 1smd b.71.1.1,c.1.8.1 27773,28760