# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 1.06e-06 1gqzA 274 1.10e-06 d.21.1.1,d.21.1.1 83311,83312 1bwzA 274 1.55e-06 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 1.48e-03 1tm0A 350 1.59e-02 d.21.1.3 107147 1t6kA 278 2.12e-01 1xubA 298 3.69e-01 1oe4A 247 3.83e-01 c.18.1.3 86895 1ym5A 300 4.82e-01 2b3nA 159 5.74e-01 1u1wA 298 7.06e-01 1pzgA 331 7.70e-01 c.2.1.5,d.162.1.1 95425,95426 1qyaA 307 1.02e+00 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 1.51e+00 d.21.1.2,d.21.1.2 98807,98808 1x1nA 524 3.53e+00 1souA 194 3.63e+00 c.124.1.6 105858 1lox 662 4.32e+00 1lox a.119.1.2,b.12.1.1 19238,23638 2g6yA 217 4.65e+00 1k6dA 220 5.43e+00 c.124.1.2 72082 1m6eX 359 6.02e+00 c.66.1.35 91188 1wbpA 397 7.82e+00 1zq4A 693 9.01e+00 1s7jA 262 9.34e+00 d.21.1.2 98647 2bduA 297 1.02e+01 1hzdA 272 1.20e+01 c.14.1.3 65969 2fp4B 395 1.25e+01 1fa0A 537 1.28e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1s5jA 847 1.40e+01 2b1xA 470 1.54e+01 1mkeA 152 1.79e+01 b.55.1.4 79231 1ss4A 153 1.91e+01 d.32.1.6 105976 1ep3B 262 2.02e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1mjfA 281 2.07e+01 c.66.1.17 79198 1sr8A 298 2.10e+01 e.54.1.1 105959 2fbeA 201 2.15e+01 1kkoA 413 2.23e+01 c.1.11.2,d.54.1.1 68675,68676 2calA 154 2.53e+01 1yn9A 169 2.57e+01 2g09A 297 2.64e+01 2a4hA 126 2.81e+01 1i4uA 181 2.82e+01 b.60.1.1 61732 1oi6A 205 2.86e+01 b.82.1.1 103940 1ut9A 609 2.90e+01 a.102.1.2,b.1.18.2 99912,99913 1vknA 351 3.04e+01 c.2.1.3,d.81.1.1 108676,108677 1nnsA 326 3.06e+01 c.88.1.1 85910 1uj6A 227 3.10e+01 c.124.1.4,d.58.40.1 107898,107899 1e30A 155 3.19e+01 1rcy b.6.1.1 23016 1zmdA 474 3.22e+01 1wchA 315 3.29e+01 1igrA 478 3.33e+01 1igrA c.10.2.5,c.10.2.5,g.3.9.1 30877,30878,44188 2bnmA 198 3.40e+01 1ofnA 205 3.53e+01 b.82.1.1 92830 1prxA 224 3.53e+01 1prxA c.47.1.10 33076 1a65A 504 3.64e+01 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1yzhA 214 3.82e+01 1pg6A 243 3.89e+01 b.82.5.2 94673 2cr4A 126 3.93e+01 1io7A 368 3.94e+01 1f4tA a.104.1.1 18971 1nw1A 429 3.95e+01 d.144.1.8 86286 1ak0 270 4.01e+01 1ak0 a.124.1.2 19345 1tjvA 474 4.02e+01 a.127.1.1 107054 1o0pA 104 4.20e+01 d.58.7.1 86535 16pk 415 4.21e+01 16pk c.86.1.1 35454 1xd8A 289 4.27e+01 1bjt 793 4.27e+01 1bjt e.11.1.1 43249 1khbA 625 4.33e+01 c.91.1.1,c.109.1.1 68606,68607 1ryaA 160 4.55e+01 d.113.1.5 105122 2azpA 318 4.66e+01 1npyA 271 4.72e+01 c.2.1.7,c.58.1.5 85995,85996 2avdA 219 4.77e+01 1vjzA 341 4.86e+01 c.1.8.3 100838 1eudB 396 4.88e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1wycA 392 5.09e+01 2atvA 196 5.11e+01 1php 394 5.12e+01 16pk c.86.1.1 35452 1zesA 125 5.30e+01 1kte 105 5.31e+01 1kte c.47.1.1 32771 1ia8A 289 5.36e+01 1ia8A d.144.1.7 62112 1c0eA 157 5.39e+01 1dg9A c.44.1.1 32638 1uk8A 282 5.43e+01 c.69.1.10 107907 1o04A 500 5.53e+01 c.82.1.1 86508 1nc5A 373 5.73e+01 a.102.1.6 85548 1v10A 521 5.73e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1wdkC 390 5.81e+01 c.95.1.1,c.95.1.1 109258,109259 1kyhA 276 5.85e+01 c.72.1.4 73222 1rcy 151 5.90e+01 1rcy b.6.1.1 23018 1q6hA 224 5.93e+01 d.26.1.1 95975 1gw5A 621 5.99e+01 a.118.1.10 70629 1kv9A 668 5.99e+01 a.3.1.6,b.70.1.1 73056,73057 1rreA 200 6.06e+01 d.14.1.10 97791 2g7zA 282 6.09e+01 2aamA 309 6.16e+01 1qqsA 174 6.19e+01 1nglA b.60.1.1 27143 1iupA 282 6.22e+01 c.69.1.10 76815 1z0sA 278 6.24e+01 1s1qA 145 6.24e+01 d.20.1.2 98351 1umdB 324 6.27e+01 c.36.1.7,c.48.1.2 99600,99601 1csn 298 6.28e+01 1csn d.144.1.7 41664 1ci3M 249 6.33e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1nzyA 269 6.49e+01 1nzyA c.14.1.3 30903 1o6sB 105 6.77e+01 b.1.6.1 81096 1itwA 741 7.12e+01 c.77.1.2 76793 1q6uA 245 7.20e+01 d.26.1.1 95998 1b00A 127 7.28e+01 3chy c.23.1.1 31122 1zzcA 198 7.65e+01 1whi 122 7.70e+01 1whi b.39.1.1 24810 1ry6A 360 7.87e+01 c.37.1.9 98090 1k7wA 468 7.92e+01 a.127.1.1 72130 1vljA 407 7.92e+01 e.22.1.2 108832 1yw4A 341 7.99e+01 1fnc 314 8.12e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1spxA 278 8.36e+01 c.2.1.2 98958 1k8kE 178 8.37e+01 a.148.1.1 68311 1zelA 298 8.52e+01 1senA 164 8.52e+01 c.47.1.1 105465 1tzbA 302 8.66e+01 c.80.1.1 107470 1hl9A 449 8.74e+01 b.71.1.3,c.1.8.11 90650,90651 1y0gA 191 8.74e+01 1x9iA 302 8.76e+01 1vr3A 191 8.77e+01 1suwA 249 8.80e+01 e.52.1.1 106027 1w9hA 427 8.86e+01 1pqhA 143 8.94e+01 b.52.2.1 95017