Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9907e-025.99e-19
2gkeA/T0301-2gkeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4565e-022.64e-17
1gqzA/T0301-1gqzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6502e-023.01e-19 d.21.1.1
d.21.1.1
1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0427e-011.05e-17 d.21.1.3
1w61A/T0301-1w61A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1618e-011.25e-20
1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7154e-012.56e-21
1t6kA/T0301-1t6kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6kA/T0301-1t6kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4690e-015.52e-17
1ym5A/T0301-1ym5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ym5A/T0301-1ym5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2915e+004.46e-20
2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2382e+001.30e-23
1oe4A/T0301-1oe4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oe4A/T0301-1oe4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6577e+002.58e-07 c.18.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001