# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xubA 298 1.76e-01 2gkeA 274 2.03e-01 1gqzA 274 2.39e-01 d.21.1.1,d.21.1.1 83311,83312 1p3dA 475 2.79e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1oe4A 247 3.34e+00 c.18.1.3 86895 1dkmA 410 3.43e+00 1dklA c.60.1.2 34000 1ab8A 220 3.45e+00 1azsA d.58.29.1 39414 1qx4A 274 3.48e+00 b.43.4.2,c.25.1.1 104624,104625 1ixlA 131 3.60e+00 d.38.1.5 90717 1dp4A 435 3.69e+00 1dp4A c.93.1.1 35710 1vdkA 466 4.54e+00 a.127.1.1 100561 1umkA 275 5.20e+00 1kq3A 376 5.78e+00 e.22.1.2 68790 1dkqA 410 5.98e+00 1dklA c.60.1.2 33998 1mxmA 254 6.50e+00 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1mkiA 330 7.41e+00 e.3.1.2 84994 1o5zA 442 9.03e+00 c.59.1.2,c.72.2.2 92530,92531 1gtzA 156 1.08e+01 c.23.13.1 70539 1rzhL 281 1.10e+01 f.26.1.1 98164 1nnsA 326 1.13e+01 c.88.1.1 85910 1t6cA 315 1.34e+01 c.55.1.8,c.55.1.8 106558,106559 1ijyA 130 1.36e+01 1ijxA a.141.1.1 62517 1josA 128 1.45e+01 d.52.7.1 84191 1sr8A 298 1.54e+01 e.54.1.1 105959 1hzdA 272 1.69e+01 c.14.1.3 65969 1kvkA 395 1.71e+01 d.14.1.5,d.58.26.3 73060,73061 1j5pA 253 1.75e+01 d.81.1.3,c.2.1.3 71577,83092 1ryiA 382 1.79e+01 1cl8A 276 1.81e+01 1ckqA c.52.1.1 33230 1t6aA 126 1.87e+01 d.129.8.1 106555 1ghpA 258 1.88e+01 1btl e.3.1.1 60520 1iznB 277 2.00e+01 e.43.1.2 83848 1bupA 386 2.02e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1k0eA 453 2.05e+01 d.161.1.1 67938 1qstA 160 2.09e+01 1yghA d.108.1.1 40804 1ig8A 486 2.34e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1tafB 70 2.41e+01 1tafB a.22.1.3 16482 1giqA 413 2.44e+01 d.166.1.1,d.166.1.1 76224,76225 1sk4A 163 2.71e+01 d.118.1.1 105664 1prxA 224 2.99e+01 1prxA c.47.1.10 33076 1j1iA 296 3.00e+01 c.69.1.10 83977 4uagA 437 3.02e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1q15A 503 3.13e+01 c.26.2.1,d.153.1.1 95538,95539 1aa6 715 3.13e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1h9dB 134 3.33e+01 2jhbA b.54.1.1 60822 1vh5A 148 3.39e+01 d.38.1.5 100642 1iicA 422 3.49e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1e1oA 504 3.67e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1o8bA 219 3.68e+01 c.124.1.4,d.58.40.1 81180,81181 1pj5A 830 3.73e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1v9yA 167 3.92e+01 d.110.3.2 108454 1k24A 253 3.95e+01 f.4.4.2 72002 1pzgA 331 4.14e+01 c.2.1.5,d.162.1.1 95425,95426 1lshA 1056 4.15e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1q3iA 214 4.16e+01 d.220.1.1 104524 3proC 166 4.20e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1jf9A 408 4.54e+01 1c0nA c.67.1.3 62931 1od3A 168 4.65e+01 b.18.1.10 86825 1izmA 184 4.74e+01 a.199.1.1 90725 1o17A 345 4.78e+01 a.46.2.1,c.27.1.1 80765,80766 1b7yA 350 4.79e+01 1pysA d.104.1.1 40776 1hbnC 248 4.81e+01 1mroC d.58.31.1 60902 1lo7A 141 4.87e+01 d.38.1.1 74144 1uwkA 557 4.92e+01 e.51.1.1 108065 1r5eA 115 4.94e+01 1rsy 152 4.98e+01 1rsy b.7.1.2 23192 1b63A 333 5.01e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1g5cA 170 5.04e+01 1g5cA c.53.2.1 60264 1jc9A 269 5.17e+01 d.171.1.1 66490 1h2eA 207 5.18e+01 c.60.1.1 70857 1ru0A 105 5.29e+01 1rzuA 485 5.35e+01 c.87.1.8 105140 1snzA 344 5.44e+01 b.30.5.4 98930 1vljA 407 5.46e+01 e.22.1.2 108832 1sg6A 393 5.58e+01 e.22.1.1 105522 1q1rA 431 5.70e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1pjcA 361 5.73e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1jhjA 171 5.82e+01 b.18.1.9 66714 2ga9D 469 5.83e+01 1h65A 270 6.08e+01 c.37.1.8 65640 1jb9A 316 6.10e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1evhA 112 6.11e+01 1evhA b.55.1.4 26997 1xttA 216 6.12e+01 1l5oA 356 6.19e+01 c.39.1.1 77711 1sauA 115 6.22e+01 1jihA 531 6.27e+01 d.240.1.1,e.8.1.7 90374,90375 1xjvA 294 6.27e+01 1q5dA 419 6.47e+01 a.104.1.1 95891 1oohA 126 6.66e+01 a.39.2.1 93383 1rl0A 255 6.69e+01 1gmuA 143 7.04e+01 b.107.1.1,d.58.38.1 65335,65336 1gy8A 397 7.05e+01 c.2.1.2 83376 1tkeA 224 7.05e+01 1r9fA 136 7.17e+01 d.255.1.1 97257 1pyoA 167 7.17e+01 c.17.1.1 95370 1sziA 247 7.19e+01 a.24.23.1 106159 1elvA 333 7.20e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1s1qA 145 7.31e+01 d.20.1.2 98351 1iujA 106 7.34e+01 d.58.4.5 90701 1m0uA 249 7.57e+01 a.45.1.1,c.47.1.5 78359,78360 1mqvA 125 7.63e+01 a.24.3.2 79415 1vl2A 421 7.67e+01 c.26.2.1,d.210.1.1 108708,108709 1kr7A 110 7.68e+01 a.1.1.4 72890 1xgkA 352 7.68e+01 1gkmA 509 7.71e+01 a.127.1.2 70228 1k6iA 352 7.77e+01 c.2.1.2 68223 1bdo 80 7.82e+01 1bdo b.84.1.1 28214 1ecfA 504 7.89e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1dwkA 156 8.01e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1rypD 241 8.15e+01 1rypD d.153.1.4 41935 2gfgA 193 8.21e+01 1ogsA 497 8.24e+01 b.71.1.2,c.1.8.3 86997,86998 1eueA 86 8.26e+01 1cyo d.120.1.1 59504 1mngA 203 8.40e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1f3uA 118 8.40e+01 1f3uA b.65.1.1 27521 1sz7A 200 8.48e+01 1mp9A 198 8.53e+01 d.129.1.1,d.129.1.1 91385,91386 1ubkL 534 8.62e+01 e.18.1.1 88422 1woqA 267 8.75e+01 c.55.1.10,c.55.1.10 109462,109463 1eexA 554 8.78e+01 1dioA c.1.19.3 29650 1s12A 94 8.81e+01 1o7nA 449 9.00e+01 b.33.1.2,d.129.3.3 81162,81163