# List of top-scoring protein chains for T0301.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uf2K 506 5.70e-01 1kkoA 413 1.66e+00 c.1.11.2,d.54.1.1 68675,68676 2b3nA 159 1.83e+00 1ygs 234 2.02e+00 1ygs b.26.1.1 23907 1mr1A 235 2.03e+00 b.26.1.1 79418 1u7vB 236 2.04e+00 b.26.1.1 107730 1u7fB 239 2.08e+00 b.26.1.1 107721 1g88A 268 2.12e+00 1ygs b.26.1.1 23911 1dd1A 268 2.14e+00 b.26.1.1 23908 1z8wA 208 3.82e+00 1ioiA 208 3.84e+00 1a2zA c.56.4.1 62629 1x12A 208 3.85e+00 1z8xA 208 3.85e+00 1z8tA 208 3.85e+00 1x10A 208 3.87e+00 1lm6A 215 3.88e+00 d.167.1.1 84628 1iofA 208 4.08e+00 1a2zA c.56.4.1 62625 1re5A 450 4.56e+00 a.127.1.1 104911 1ewrA 649 5.21e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1 19073,32387,33744 2aiaA 203 5.25e+00 1shzC 233 5.27e+00 2aieP 203 5.28e+00 1ewqA 765 5.56e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1fw6A 768 5.59e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19071,32385,33742,39745 2gkeA 274 6.02e+00 1tm0A 350 6.23e+00 d.21.1.3 107147 1wchA 315 7.03e+00 1bwzA 274 7.61e+00 1bwzA d.21.1.1,d.21.1.1 38337,38338 1b1cA 181 8.34e+00 1amoA c.23.5.2 31212 2deoA 230 8.75e+00 1o0pA 104 9.23e+00 d.58.7.1 86535 2fug3 783 1.11e+01 1xi6A 262 1.11e+01 1o9jA 501 1.46e+01 c.82.1.1 86694 2biwA 490 1.90e+01 1gdeA 389 2.04e+01 c.67.1.1 60456 1djuA 388 2.04e+01 1bjwA c.67.1.1 59116 2ftsA 419 2.10e+01 1t3eA 421 2.11e+01 b.85.6.1,b.103.1.1,c.57.1.2 106348,106349,106350 2a5vA 213 2.24e+01 1ym3A 215 2.25e+01 1hl9A 449 2.45e+01 b.71.1.3,c.1.8.11 90650,90651 1vhxA 150 2.70e+01 c.55.3.8 100712 1jscA 630 2.83e+01 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 2b94A 267 2.97e+01 1t9bA 677 2.99e+01 1udeA 195 3.11e+01 b.40.5.1 99208 1f5vA 240 3.21e+01 1bkjA d.90.1.1 40255 1y8xA 160 3.24e+01 1n1jB 97 3.34e+01 a.22.1.3 79814 1gynA 358 3.48e+01 c.1.10.2 83385 1yeeL 219 3.62e+01 32c2A b.1.1.1,b.1.1.2 20156,21186 1yejL 219 3.85e+01 8fabA b.1.1.1,b.1.1.2 20140,21170 1cm0A 168 3.85e+01 1yghA d.108.1.1 40800 1o0sA 605 3.94e+01 c.2.1.7,c.58.1.3 86540,86541 1pprM 312 4.04e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1ci0A 228 4.07e+01 1ci0A b.45.1.1 25750 1yedA 219 4.22e+01 32c2A b.1.1.1,b.1.1.2 20150,21180 2b1xA 470 4.26e+01 1gc9A 345 4.42e+01 1cnzA c.77.1.1 35037 2gsq 202 4.63e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1jryA 571 4.72e+01 a.138.1.3,c.3.1.4,d.168.1.1 67199,67200,67201 1k6nL 281 4.77e+01 f.26.1.1 72090 1vhzA 198 4.86e+01 d.113.1.1 100718 1kxjA 205 4.98e+01 c.23.16.1 73153 1jh0L 281 4.98e+01 f.26.1.1 63036 1v1cA 71 5.00e+01 1dj3A 442 5.01e+01 1adeA c.37.1.10 32239 2a8nA 144 5.04e+01 2cb5A 453 5.09e+01 3gcb d.3.1.1 37035 1kssA 571 5.14e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1w0dA 337 5.15e+01 1y0pA 571 5.15e+01 1ixlA 131 5.17e+01 d.38.1.5 90717 1ksuA 571 5.17e+01 a.138.1.3,c.3.1.4,d.168.1.1 72931,72932,72933 1k9vF 201 5.31e+01 c.23.16.1 68365 2c1pA 218 5.40e+01 1esxA 96 5.41e+01 1esxA j.11.1.1 59501 1jrzA 571 5.42e+01 a.138.1.3,c.3.1.4,d.168.1.1 67205,67206,67207 1zccA 248 5.50e+01 1pgjA 478 5.66e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1p2hA 571 5.69e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1miqA 375 5.73e+01 b.50.1.2 79151 1sxjA 516 5.89e+01 a.80.1.1,c.37.1.20 106081,106082 1sq6A 253 6.03e+01 c.56.2.1 98964 2b7rA 571 6.12e+01 2c1oA 254 6.23e+01 1jrxA 571 6.30e+01 a.138.1.3,c.3.1.4,d.168.1.1 67193,67194,67195 2bsxA 253 6.31e+01 2d85A 124 6.31e+01 1yecL 219 6.36e+01 8fabA b.1.1.1,b.1.1.2 20144,21174 1prxA 224 6.52e+01 1prxA c.47.1.10 33076 1q1gA 276 6.56e+01 c.56.2.1 95574 1dosA 358 6.67e+01 1dosA c.1.10.2 29175 1q9iA 571 6.69e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1cb5A 453 6.71e+01 3gcb d.3.1.1 37037 1d4dA 572 6.73e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19702,30439,42322 1oe4A 247 6.77e+01 c.18.1.3 86895 1j3jA 280 6.92e+01 c.71.1.1 84066 1lmhA 184 7.06e+01 d.167.1.1 74036 2b7sA 571 7.10e+01 1w78A 422 7.10e+01 1rzhL 281 7.20e+01 f.26.1.1 98164 1ystL 273 7.27e+01 6prcL f.26.1.1 43509 1p8aA 146 7.38e+01 c.44.1.1 104084 1unfX 238 7.40e+01 1moq 368 7.46e+01 1moq c.80.1.1 35302 2b5oA 402 7.49e+01 2atvA 196 7.58e+01 1lqwA 183 7.64e+01 d.167.1.1 74210 1rybA 212 7.64e+01 c.56.3.1 98098 1itwA 741 7.91e+01 c.77.1.2 76793 1j3iA 280 7.97e+01 c.71.1.1 84062 1d4cA 572 7.99e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19698,30435,42318 1q1yA 191 8.14e+01 d.167.1.1 104480 1p2eA 571 8.21e+01 a.138.1.3,c.3.1.4,d.168.1.1 93926,93927,93928 1xhkA 187 8.24e+01 2g23A 612 8.33e+01 1c7qA 445 8.37e+01 2pgi c.80.1.2 35307 1qovL 281 8.55e+01 6prcL f.26.1.1 43455 1fnqL 281 8.63e+01 6prcL f.26.1.1 59918 1g8pA 350 8.68e+01 1g8pA c.37.1.20 60376 1lqyA 184 8.71e+01 d.167.1.1 74212 1zo1I 501 8.76e+01 1yf6L 281 8.86e+01 1yioA 208 8.98e+01