# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 7.60e-02 1gqzA 274 7.72e-02 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 1.24e-01 1pzgA 331 1.41e-01 c.2.1.5,d.162.1.1 95425,95426 1xubA 298 4.06e-01 1ym5A 300 4.29e-01 1oe4A 247 4.37e-01 c.18.1.3 86895 1kkoA 413 6.58e-01 c.1.11.2,d.54.1.1 68675,68676 2b3nA 159 1.05e+00 1wchA 315 1.29e+00 1umkA 275 1.47e+00 1qx4A 274 1.47e+00 b.43.4.2,c.25.1.1 104624,104625 1k6dA 220 2.02e+00 c.124.1.2 72082 1ep3B 262 2.04e+00 1ep2B b.43.4.2,c.25.1.3 25664,31554 1yoxA 250 2.18e+00 2fp4B 395 5.80e+00 1uz5A 402 6.15e+00 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1vjzA 341 6.90e+00 c.1.8.3 100838 1nnxA 109 7.37e+00 b.40.10.1 92013 2g09A 297 7.46e+00 2azpA 318 7.88e+00 1gvhA 396 7.92e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1ixlA 131 8.25e+00 d.38.1.5 90717 1nnsA 326 8.56e+00 c.88.1.1 85910 16pk 415 8.57e+00 16pk c.86.1.1 35454 1hzdA 272 9.15e+00 c.14.1.3 65969 2bsxA 253 1.09e+01 1ogiA 303 1.16e+01 b.43.4.2,c.25.1.1 92914,92915 1evhA 112 1.24e+01 1evhA b.55.1.4 26997 1vknA 351 1.46e+01 c.2.1.3,d.81.1.1 108676,108677 1jhjA 171 1.51e+01 b.18.1.9 66714 1w9hA 427 1.53e+01 1v9kA 228 1.62e+01 d.265.1.3 108449 1g55A 343 1.71e+01 1g55A c.66.1.26 34247 1dgfA 497 1.75e+01 1cf9A e.5.1.1 42782 1mjfA 281 1.95e+01 c.66.1.17 79198 1g2iA 166 1.99e+01 1g2iA c.23.16.2 31438 1k8kE 178 2.00e+01 a.148.1.1 68311 1lqaA 346 2.13e+01 c.1.7.1 84674 1o6sB 105 2.38e+01 b.1.6.1 81096 1gvfA 286 2.51e+01 c.1.10.2 70599 2gjgA 248 2.61e+01 1cq3A 233 2.62e+01 1cq3A b.27.1.1 23923 2cc0A 195 2.63e+01 1gtzA 156 2.63e+01 c.23.13.1 70539 1s7zA 117 2.64e+01 a.159.3.1 98715 1n8jA 186 2.65e+01 c.47.1.10 85401 1yge 839 2.72e+01 1yge a.119.1.1,b.12.1.1 19234,23634 3tgl 269 2.78e+01 3tgl c.69.1.17 34733 1prxA 224 2.81e+01 1prxA c.47.1.10 33076 1fnd 314 2.83e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1zu4A 320 2.89e+01 1szqA 483 2.99e+01 e.44.1.1 99045 2b7kA 200 3.03e+01 2pgd 482 3.08e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 2gp4A 628 3.10e+01 1io7A 368 3.13e+01 1f4tA a.104.1.1 18971 2b1xA 470 3.25e+01 1umdB 324 3.30e+01 c.36.1.7,c.48.1.2 99600,99601 1b7yB 785 3.33e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1wc3A 219 3.39e+01 1t9bA 677 3.43e+01 2dfkA 402 3.48e+01 1b00A 127 3.55e+01 3chy c.23.1.1 31122 1vpt 348 3.58e+01 3mag c.66.1.25 34207 1sr8A 298 3.59e+01 e.54.1.1 105959 1bx1A 314 3.60e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1ycdA 243 3.63e+01 1php 394 3.63e+01 16pk c.86.1.1 35452 2calA 154 3.79e+01 2anuA 255 3.83e+01 1vr3A 191 3.92e+01 1mv8A 436 3.96e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2b0jA 358 4.06e+01 1q6uA 245 4.07e+01 d.26.1.1 95998 1yqdA 366 4.14e+01 1rreA 200 4.19e+01 d.14.1.10 97791 1gmiA 136 4.34e+01 b.7.1.1 65309 1e30A 155 4.41e+01 1rcy b.6.1.1 23016 1q6hA 224 4.44e+01 d.26.1.1 95975 1u5kA 244 4.51e+01 1oi6A 205 4.54e+01 b.82.1.1 103940 1o59A 355 4.66e+01 b.18.1.22,b.18.1.22 92495,92496 2g7sA 194 4.75e+01 2blnA 305 4.82e+01 2gfoA 396 4.82e+01 2d1yA 256 4.93e+01 1aozA 552 5.24e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1hw5A 210 5.48e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1afwA 393 5.49e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1q8fA 313 5.57e+01 c.70.1.1 96203 2erfA 209 5.65e+01 1b56 135 5.70e+01 1hmt b.60.1.2 27183 1s1qA 145 5.73e+01 d.20.1.2 98351 1vljA 407 5.79e+01 e.22.1.2 108832 1sdjA 310 5.96e+01 d.21.1.2,d.21.1.2 98807,98808 1s5jA 847 5.96e+01 1cqxA 403 6.01e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2fr2A 172 6.03e+01 1hxhA 253 6.07e+01 c.2.1.2 76725 1jb9A 316 6.12e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1uf3A 228 6.31e+01 d.159.1.6 99317 1ni9A 338 6.45e+01 e.7.1.2 85739 1dpgA 485 6.50e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1i0rA 169 6.61e+01 1i0rA b.45.1.2 61489 1sz7A 200 6.67e+01 1t2dA 322 6.75e+01 c.2.1.5,d.162.1.1 99084,99085 1wu4A 396 6.76e+01 2a8eA 220 6.95e+01 1ss4A 153 7.01e+01 d.32.1.6 105976 2g7zA 282 7.07e+01 1zxxA 319 7.10e+01 1ja9A 274 7.14e+01 c.2.1.2 62817 1ry6A 360 7.28e+01 c.37.1.9 98090 1twuA 139 7.37e+01 d.32.1.8 107413 1kte 105 7.55e+01 1kte c.47.1.1 32771 1v25A 541 7.60e+01 e.23.1.1 108275 1zzkA 82 7.64e+01 1uk8A 282 7.77e+01 c.69.1.10 107907 1x0rA 249 7.89e+01 1ma3A 253 7.89e+01 c.31.1.5 78883 1dqgA 135 8.02e+01 1dqgA b.42.2.2 25579 1a8y 367 8.14e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1p4oA 322 8.18e+01 d.144.1.7 87775 1dnv 437 8.21e+01 1dnv b.121.5.3 23332 1nnvA 110 8.22e+01 d.17.7.1 92012 1qipA 183 8.28e+01 1qipA d.32.1.1 38470 1t82A 155 8.31e+01 d.38.1.5 106639 1zvnA 99 8.39e+01 2avdA 219 8.54e+01 1ia8A 289 8.76e+01 1ia8A d.144.1.7 62112 2cxcA 144 8.85e+01