CreatePredAlphaCost pred_alpha2k alpha11 T0300.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0300.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0300.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 25 dry8 15 dry12 5 \
	phobic_fit 1 \
	sidechain 3 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 20 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 

# from T0300.dssp-ehl2.constraints
HelixConstraint 	Y10	K32	0.863
HelixConstraint 	A46	A76	0.6595
HelixConstraint 	E82	Q90	0.7193
StrandConstraint	L94	D97	0.7883

#I added constraints from rr.constraints 
#that seem like they will keep the 3-helix bundle shape that we want

Constraint I68.CB L92.CB -10. 7.0 14.0 0.577835536214
Constraint V72.CB L92.CB -10. 7.0 14.0 0.50192074196
Constraint V31.CB I53.CB -10. 7.0 14.0 0.475238586834
Constraint V72.CB L88.CB -10. 7.0 14.0 0.452385272469
Constraint M13.CB L88.CB -10. 7.0 14.0 0.417488375912
Constraint A64.CB L92.CB -10. 7.0 14.0 0.39486183416
Constraint I68.CB L89.CB -10. 7.0 14.0 0.394166953933
Constraint I68.CB L88.CB -10. 7.0 14.0 0.377061549273
Constraint V72.CB L85.CB -10. 7.0 14.0 0.342677895522
Constraint V31.CB S51.CB -10. 7.0 14.0 0.321555660613
Constraint R75.CB L85.CB -10. 7.0 14.0 0.302003819108

#if we don't want the end of the helix extended
#then these might be good
Constraint I68.CB V96.CB -10. 7.0 14.0 0.318536397971
Constraint V72.CB V96.CB -10. 7.0 14.0 0.308804336134