# TARGET T0300 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0300.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.004 0.002 0.005 0.004 0.005 0.007 0.974 2 A 0.035 0.045 0.017 0.020 0.015 0.038 0.830 3 S 0.039 0.024 0.030 0.032 0.231 0.105 0.541 4 K 0.035 0.014 0.061 0.058 0.212 0.153 0.467 5 K 0.022 0.012 0.066 0.048 0.188 0.113 0.552 6 P 0.033 0.012 0.060 0.043 0.179 0.145 0.527 7 D 0.036 0.015 0.030 0.031 0.196 0.122 0.570 8 K 0.028 0.030 0.008 0.021 0.269 0.030 0.614 9 T 0.015 0.050 0.002 0.036 0.106 0.006 0.784 10 Y 0.001 0.001 0.008 0.970 0.008 0.008 0.006 11 E 0.001 0.001 0.005 0.975 0.004 0.012 0.004 12 E 0.001 0.001 0.004 0.984 0.002 0.008 0.002 13 M 0.001 0.001 0.001 0.990 0.002 0.006 0.002 14 V 0.001 0.001 0.001 0.986 0.003 0.008 0.003 15 K 0.001 0.001 0.001 0.988 0.002 0.007 0.002 16 E 0.001 0.001 0.001 0.989 0.002 0.005 0.004 17 V 0.001 0.001 0.001 0.992 0.002 0.002 0.003 18 E 0.001 0.001 0.001 0.986 0.001 0.011 0.002 19 R 0.001 0.001 0.001 0.962 0.001 0.035 0.001 20 L 0.001 0.001 0.001 0.950 0.006 0.036 0.007 21 K 0.001 0.001 0.001 0.919 0.010 0.058 0.010 22 L 0.005 0.003 0.006 0.789 0.051 0.067 0.079 23 E 0.004 0.004 0.015 0.770 0.040 0.085 0.082 24 N 0.004 0.001 0.011 0.845 0.030 0.064 0.045 25 K 0.002 0.001 0.019 0.903 0.019 0.038 0.019 26 T 0.002 0.001 0.011 0.934 0.010 0.030 0.013 27 L 0.003 0.001 0.013 0.922 0.010 0.019 0.032 28 K 0.003 0.001 0.008 0.955 0.008 0.012 0.013 29 Q 0.005 0.001 0.007 0.955 0.006 0.018 0.010 30 K 0.002 0.001 0.008 0.955 0.005 0.025 0.005 31 V 0.003 0.002 0.007 0.934 0.012 0.028 0.014 32 K 0.005 0.003 0.014 0.854 0.016 0.093 0.017 33 S 0.006 0.003 0.010 0.559 0.088 0.288 0.045 34 S 0.006 0.009 0.013 0.153 0.191 0.328 0.301 35 G 0.006 0.015 0.011 0.023 0.247 0.147 0.551 36 A 0.012 0.022 0.031 0.015 0.311 0.224 0.386 37 V 0.011 0.029 0.022 0.013 0.427 0.077 0.421 38 S 0.011 0.028 0.019 0.009 0.265 0.057 0.611 39 S 0.027 0.046 0.046 0.026 0.209 0.163 0.482 40 D 0.021 0.026 0.084 0.027 0.186 0.175 0.481 41 D 0.020 0.017 0.099 0.024 0.245 0.104 0.491 42 S 0.061 0.026 0.096 0.026 0.174 0.100 0.517 43 I 0.097 0.047 0.050 0.018 0.174 0.063 0.550 44 L 0.043 0.041 0.006 0.010 0.242 0.012 0.646 45 T 0.018 0.016 0.001 0.009 0.063 0.002 0.890 46 A 0.001 0.001 0.028 0.916 0.013 0.030 0.012 47 A 0.001 0.001 0.019 0.950 0.005 0.021 0.005 48 K 0.001 0.001 0.019 0.958 0.003 0.011 0.008 49 R 0.001 0.001 0.002 0.990 0.001 0.004 0.003 50 E 0.002 0.001 0.001 0.986 0.002 0.006 0.003 51 S 0.002 0.001 0.001 0.985 0.001 0.009 0.002 52 I 0.001 0.001 0.001 0.983 0.002 0.010 0.003 53 I 0.001 0.001 0.001 0.987 0.001 0.008 0.002 54 V 0.001 0.001 0.001 0.989 0.002 0.006 0.001 55 S 0.001 0.001 0.001 0.988 0.002 0.007 0.002 56 S 0.001 0.001 0.002 0.988 0.001 0.007 0.001 57 S 0.001 0.001 0.002 0.989 0.001 0.007 0.001 58 R 0.001 0.001 0.002 0.981 0.001 0.014 0.001 59 A 0.001 0.001 0.005 0.953 0.002 0.039 0.002 60 L 0.001 0.001 0.008 0.944 0.005 0.038 0.005 61 G 0.001 0.001 0.006 0.964 0.007 0.017 0.006 62 A 0.001 0.001 0.005 0.967 0.006 0.017 0.004 63 V 0.001 0.001 0.004 0.962 0.003 0.026 0.004 64 A 0.001 0.001 0.002 0.965 0.003 0.024 0.005 65 M 0.001 0.001 0.001 0.979 0.003 0.014 0.002 66 R 0.001 0.001 0.001 0.987 0.003 0.007 0.002 67 K 0.001 0.001 0.001 0.989 0.001 0.008 0.002 68 I 0.001 0.001 0.001 0.992 0.001 0.005 0.001 69 E 0.001 0.001 0.001 0.994 0.001 0.004 0.001 70 A 0.001 0.001 0.001 0.993 0.001 0.005 0.001 71 K 0.001 0.001 0.001 0.987 0.001 0.011 0.001 72 V 0.001 0.001 0.001 0.984 0.002 0.011 0.002 73 R 0.001 0.001 0.005 0.979 0.002 0.011 0.002 74 S 0.001 0.001 0.006 0.964 0.002 0.026 0.001 75 R 0.001 0.001 0.010 0.905 0.003 0.079 0.003 76 A 0.001 0.003 0.021 0.830 0.026 0.098 0.020 77 A 0.003 0.001 0.148 0.543 0.027 0.237 0.041 78 K 0.004 0.001 0.134 0.334 0.039 0.441 0.046 79 A 0.023 0.023 0.109 0.236 0.085 0.297 0.228 80 V 0.053 0.123 0.018 0.077 0.241 0.113 0.375 81 T 0.035 0.012 0.004 0.047 0.172 0.031 0.699 82 E 0.004 0.002 0.019 0.799 0.041 0.046 0.088 83 Q 0.001 0.001 0.012 0.946 0.011 0.022 0.008 84 E 0.001 0.001 0.014 0.958 0.004 0.018 0.006 85 L 0.001 0.001 0.006 0.975 0.004 0.009 0.005 86 T 0.001 0.001 0.004 0.981 0.003 0.008 0.003 87 S 0.002 0.001 0.004 0.975 0.002 0.014 0.003 88 L 0.001 0.001 0.008 0.958 0.004 0.022 0.007 89 L 0.005 0.003 0.030 0.894 0.009 0.040 0.018 90 Q 0.003 0.001 0.046 0.577 0.017 0.348 0.007 91 S 0.003 0.001 0.025 0.168 0.023 0.767 0.014 92 L 0.033 0.005 0.005 0.035 0.220 0.071 0.631 93 T 0.199 0.004 0.002 0.006 0.360 0.039 0.390 94 L 0.848 0.012 0.002 0.004 0.026 0.005 0.104 95 R 0.928 0.002 0.001 0.002 0.004 0.001 0.061 96 V 0.937 0.001 0.001 0.002 0.005 0.001 0.053 97 D 0.879 0.002 0.001 0.002 0.009 0.001 0.107 98 V 0.486 0.010 0.002 0.003 0.038 0.004 0.456 99 S 0.224 0.011 0.003 0.004 0.084 0.008 0.667 100 M 0.066 0.006 0.053 0.033 0.133 0.201 0.507 101 E 0.014 0.005 0.041 0.025 0.013 0.140 0.763 102 E 0.001 0.001 0.001 0.001 0.001 0.001 0.997